NO28G01420.1, NO28G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01420.1
Unique NameNO28G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1034
Alignment locationchr28:444513..447003 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:444513..447003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01420.1 vs.
Match: XP_005784129.1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase [Emiliania huxleyi CCMP1516]; XP_005785964.1 hypothetical protein EMIHUDRAFT_467791 [Emiliania huxleyi CCMP1516]; EOD31700.1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase [Emiliania huxleyi CCMP1516]; EOD33535.1 hypothetical protein EMIHUDRAFT_467791 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 251.9 bits (642), Expect = 2.700e-63
Identity = 132/246 (53.66%), Postives = 164/246 (66.67%), Query Frame = 0 
Query:   79 VSERQIPQYLETMKLYYHNDSSKPVTPVTFNQQEDFVSYLGDEKLVAKPGEEPYKLVHVSKAPLFSPEECQAIIDECEERAAKVG-WATKRHFAYPTTDVPLKELPRTLEWF--NEKLQERIYPCLASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSFVILEGFANWAMRFANLVWDY 322
            VSER    Y ET+KL+      +P+ P    ++    S++        P  +   L+H +  PL S  EC AI+ E EE AA+ G W ++RHF +PT D+PL ELP T  WF   + L +RIYP L + F ++LP+   L+V DAFIVKYDA GGQT LKPHRDGSVVSFN+ALN   E+EGGGT+F GL + L IE+GH+  HAS VLHGGHPITSG RYILV+FVILEG+ NWAMRF   VWDY
Sbjct:   35 VSERHNQAYKETIKLF------EPLAPDAPLRRVPLASHV--------PHPDGDCLIHTTTEPLLSAAECAAIVAESEEWAAREGGWTSRRHFNHPTIDIPLSELPAT-RWFLNTDALPKRIYPMLGAAFEESLPNWRALRVADAFIVKYDAAGGQTHLKPHRDGSVVSFNIALNERCEYEGGGTWFDGLGEALPIERGHVCCHASGVLHGGHPITSGVRYILVAFVILEGYQNWAMRFMKSVWDY 265
The following BLAST results are available for this feature:
BLAST of NO28G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005784129.12.700e-6353.66procollagen-lysine, 2-oxoglutarate 5-dioxygenase [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01420NO28G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01420.1NO28G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01420.1.cds1NO28G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01420.1.cds2NO28G01420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01420.1.cds3NO28G01420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01420.1.cds4NO28G01420.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01420.1.cds5NO28G01420.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01420.1.cds6NO28G01420.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01420.1.cds7NO28G01420.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01420.1.cds8NO28G01420.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01420.1.cds9NO28G01420.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01420.1 ID=NO28G01420.1|Name=NO28G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1034bp
ACAGGGCCAGCAATAGGATGAAACTGAGGCGTAGCTCGTTCTCGTCGTCC
ATTGTGACCAAAGACACAAGTTGTTACAGCAGCAGCAGTAGACGAAGGAG
GAGAGGAGGTCTGCAAATCAACCTGTCCTGCTCCTTGTCCTCTTTCCTGC
TCCTTCCCCTCTTCTATCTAAGCAGAAACGGCAGCAGTATAAATGCCTTC
CTCCTTCCGTCTCCTTCAATCGACGTCAAAGTAGCTTTAATGAGACGGCA
TGTGTCGGAACGCCAAATCCCCCAATACTTGGAGACGATGAAGCTGTACT
ACCACAACGACAGCAGCAAGCCTGTCACCCCTGTCACGTTCAACCAACAG
GAAGATTTTGTTTCGTATTTGGGAGATGAAAAGCTAGTGGCGAAACCTGG
CGAGGAGCCCTACAAGCTGGTGCACGTGTCCAAAGCTCCTCTTTTCTCCC
CCGAGGAGTGCCAGGCAATAATAGATGAGTGTGAGGAACGCGCTGCGAAG
GTGGGGTGGGCCACCAAAAGGCACTTTGCCTACCCTACCACTGACGTGCC
CCTCAAGGAGCTTCCTCGAACCTTGGAATGGTTCAATGAAAAGCTACAAG
AGAGGATCTATCCCTGCCTGGCCTCCAACTTTGCTCAAGCCCTTCCCGAC
AGTAGTAAGCTAAAGGTTGTAGACGCATTTATAGTCAAATATGACGCCGA
CGGTGGACAAACCCAGCTTAAGCCCCACAGAGACGGCAGCGTCGTCTCCT
TCAACGTTGCTCTGAATCCTTCAAGCGAGTTTGAGGGCGGAGGAACTTAC
TTCAAAGGGCTCGACGACGGCCTAAGGATCGAGCAGGGCCACATCGTCAC
GCATGCGTCCAACGTCCTGCACGGCGGCCATCCCATCACCAGTGGGAAGA
GGTACATCCTCGTCTCCTTTGTCATCCTCGAGGGTTTTGCCAATTGGGCG
ATGCGATTCGCCAATTTAGTGTGGGATTACTGAGGTTCAATCGAATGGCA
ACGACCGAAAAGGGAGGGAGGGAGGGAGGGAGGG
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protein sequence of NO28G01420.1

>NO28G01420.1-protein ID=NO28G01420.1-protein|Name=NO28G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MKLRRSSFSSSIVTKDTSCYSSSSRRRRRGGLQINLSCSLSSFLLLPLFY
LSRNGSSINAFLLPSPSIDVKVALMRRHVSERQIPQYLETMKLYYHNDSS
KPVTPVTFNQQEDFVSYLGDEKLVAKPGEEPYKLVHVSKAPLFSPEECQA
IIDECEERAAKVGWATKRHFAYPTTDVPLKELPRTLEWFNEKLQERIYPC
LASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALN
PSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVS
FVILEGFANWAMRFANLVWDY*
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mRNA from alignment at chr28:444513..447003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01420.1 ID=NO28G01420.1|Name=NO28G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2491bp|location=Sequence derived from alignment at chr28:444513..447003- (Nannochloropsis oceanica)
ACAGGGCCAGCAATAGGATGAAACTGAGGCGTAGCTCGTTCTCGTCGTCC
ATTGTGACCAAAGACACAAGTTGTTACAGCAGCAGCAGTAGACGAAGGAG
GAGAGGAGGTCTGCAAATCAACCTGTCCTGCTCCTTGTCCTCTTTCCTGC
TCCTTCCCCTCTTCTATCTAAGCAGAAACGGCAGCAGTATAAATGCCTTC
CTCCTTCCGTCTCCTTCAATCGACGTCAAAGTAGCTTTAATGAGACGGCA
TGTGTCGGAACGCCAAATCCCCCAATGTGAGTTGAAGGAGGGAAGGGAGG
TGAGGGAGGAGAGGAAGGAAAGGGAGGGAGGAAAGGAACAAAAAGGAGGT
CAGTCTTTAATTTGTTTGCATATTTATATACATGTGTGATTTGAAGAGCT
CTTTTTACGCTCTCTTCTTGCTCTAGGACGACTCTCCCTCCCTTCCTCCC
ACTCACCCTCCCTCCCACCCTCCCACCCAAGACTTGGAGACGATGAAGCT
GTACTACCACAACGACAGCAGCAAGCCTGTCACCCCTGTCACGTTCAACC
AACAGGAAGATTTTGTTTCGTATTTGGGAGATGAAAAGCTAGTGGCGAAA
CCTGGCGAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGACGGACAGTTACTCATACTCTCTTTCCCTTCCTCCCTCCCTTTCC
CCTCTTTCTAGGAGCCCTACAAGCTGGTGCACGTGTCCAAAGCTCCTCTT
TTCTCCCCCGAGGAGTGCCAGGCAATAATAGATGAGTGTGAGGAACGCGC
TGCGAAGGTGGGGTGGGCCACCAAAAGGCACTTTGGTAGGGAGGGAGGGC
GGGAGGGAGTCAGGGCGGGAGGGAGGGAGGGAGGGAGGGGATGCCGAGCT
GTCATAGGGAGGGAGAGAATTGAAGGGCAAGGGAGGGAAGGAGGGAAGGA
GGGATATCTATACCATACGCTTCAAGCACGAATCATTCATCTCCTTATTC
CACCTCCCTCTCCCTCCCCATTCCTCAGCCTACCCTACCACTGACGTGCC
CCTCAAGGAGCTTCCTCGAACCTTGGAATGGTTCAATGAAAAGGTACGCT
CTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCTTCCTTCCTC
CCCGCCCTCCCTCCTTACACGCTCCGCATCACACCCTCCCTCCTCCCAGC
TACAAGAGAGGATCTATCCCTGCCTGGCCTCCAACTTTGCTCAAGCCCTT
CCCGACAGTAGTAAGCTAAAGGTGCGCTTCCCTCCCTCCCTCCCTCCCAC
CCTCCTCCCTCCCTTCCTCCCTCCCTTCCTTCAGTGCTTTTCATACATTC
CCATTTTTTCCTTTCCTCCCTCCTCTCATCCCTTCTCTTAAACGACTCCA
TTGGAAAGATTTGTAACGAGACTCTTCCCTCCCTCCCTCATTCCCTCCCT
CCCTCATTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTTCCCAGGTTGTAGACGCATTTATAGTCAAATA
TGACGCCGACGGTGGACAAACCCAGCTTAAGCCCCACAGGCAAGCCCCCT
CCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTC
CGCTTTTCCTCATTTCATGAAGCTCCTTTCCTCCTTCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCTTTTCATGGCTTCCACATGTCGTCGACTCACGT
CTGATCCTTCTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCTCTCC
CTCCCTCCCTCTCTCCCTCCCTCCCCCCCAATAGAGACGGCAGCGTCGTC
TCCTTCAACGTTGCTCTGAATCCTTCAAGCGAGGTACTAGCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAAAC
GCCCATCGTGTCTCTCAACCCGCTCCAATGCCTACCGTCTTCTCTTCTTC
CCTTCCCCCCCCCTCCCTCCCTCCTTCTCTTTCTCCCCCCCTCCCTCCGT
GCAGTTTGAGGGCGGAGGAACTTACTTCAAAGGGCTCGACGACGGCCTAA
GGATCGAGCAGGTAGCCCCCCCCTCCCTCCCTCCCTCCTTCTTTTTGAAA
CCACGTCCACCTTGATCTCATTGCTTCAAATCATCGAATTGACACATCTC
GCTCCCTCCCTCCTTCATTCCCTCGCTCTCTCCCTCCCTTGCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGGGCCACA
TCGTCACGCATGCGTCCAACGTCCTGCACGGCGGCCATCCCATCACCAGT
GGGAAGAGGTACATCCTCGTCTCCTTTGTCATCCTCGAGGGTTTTGCCAA
TTGGGCGATGCGATTCGCCAATTTAGTGTGGGATTACTGAGGTTCAATCG
AATGGCAACGACCGAAAAGGGAGGGAGGGAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at chr28:444513..447003-

>NO28G01420.1 ID=NO28G01420.1|Name=NO28G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr28:444513..447003- (Nannochloropsis oceanica)
ATGAAACTGAGGCGTAGCTCGTTCTCGTCGTCCATTGTGACCAAAGACAC
AAGTTGTTACAGCAGCAGCAGTAGACGAAGGAGGAGAGGAGGTCTGCAAA
TCAACCTGTCCTGCTCCTTGTCCTCTTTCCTGCTCCTTCCCCTCTTCTAT
CTAAGCAGAAACGGCAGCAGTATAAATGCCTTCCTCCTTCCGTCTCCTTC
AATCGACGTCAAAGTAGCTTTAATGAGACGGCATGTGTCGGAACGCCAAA
TCCCCCAATACTTGGAGACGATGAAGCTGTACTACCACAACGACAGCAGC
AAGCCTGTCACCCCTGTCACGTTCAACCAACAGGAAGATTTTGTTTCGTA
TTTGGGAGATGAAAAGCTAGTGGCGAAACCTGGCGAGGAGCCCTACAAGC
TGGTGCACGTGTCCAAAGCTCCTCTTTTCTCCCCCGAGGAGTGCCAGGCA
ATAATAGATGAGTGTGAGGAACGCGCTGCGAAGGTGGGGTGGGCCACCAA
AAGGCACTTTGCCTACCCTACCACTGACGTGCCCCTCAAGGAGCTTCCTC
GAACCTTGGAATGGTTCAATGAAAAGCTACAAGAGAGGATCTATCCCTGC
CTGGCCTCCAACTTTGCTCAAGCCCTTCCCGACAGTAGTAAGCTAAAGGT
TGTAGACGCATTTATAGTCAAATATGACGCCGACGGTGGACAAACCCAGC
TTAAGCCCCACAGAGACGGCAGCGTCGTCTCCTTCAACGTTGCTCTGAAT
CCTTCAAGCGAGTTTGAGGGCGGAGGAACTTACTTCAAAGGGCTCGACGA
CGGCCTAAGGATCGAGCAGGGCCACATCGTCACGCATGCGTCCAACGTCC
TGCACGGCGGCCATCCCATCACCAGTGGGAAGAGGTACATCCTCGTCTCC
TTTGTCATCCTCGAGGGTTTTGCCAATTGGGCGATGCGATTCGCCAATTT
AGTGTGGGATTACTGA
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Synonyms
Publications