NO28G01410, NO28G01410 (gene) Nannochloropsis oceanica

Overview
NameNO28G01410
Unique NameNO28G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2607
Alignment locationchr28:441672..444278 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:441672..444278 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01410.1NO28G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674506gene_9871Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01410.1NO28G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01410 ID=NO28G01410|Name=NO28G01410|organism=Nannochloropsis oceanica|type=gene|length=2607bp
AGTGGGAAGCACACCACATAGGTCAATAGAGCTCGTCTCCCGCCCGCCCT
CCATTCTCCCATCCTCCACGCACTTCACAAATGGTCGTCACGGCCATGTT
GTACATGGATGGATTTGAAGGAAGGAGGGATCAGTCCCTCACACTGGCAG
GCAGACAGACACCTGTCGCATGGAAGCTACAAAAAAACGGACACTCTGAA
GGCAACGAACGTGAGGTAAGCAGGCAATAATTCTCACATCCAGGCCTTGA
CCATTCAACCACGGTTACAACATCTCCATTCGATACACAGAAAGAAGAGT
CTGGTAGTGTAGGCGCTGCTGGTGGTGGTTCTCGGCTGCTGCCGCCCCAA
AAAGCCTAAACTTCGTTTCAATGGCGACAGTGATCATCGATCATTACTTC
CACTCCACATTTCCACGCGGCCTTTCACCATCACTCTTTACCACTCCTCC
ATCCCGACACAGACAGGCACGCCAAGCCCTTGTTTGTGAAATAACGAGGC
AGATCCTTTCTTCCTTCCTATTACCTGGAAGGCAGAGGCCGCTTAGAGTA
TCCTGTTTGACTGCCCTTTGCCCTCCTCGTTCTACGACCTCCTCCCCCCC
AGTCTCTATCCCAACGTCTCGTGGCCACCATTCAACGCCAAGCAAGCTAA
GAAACATTCGGTTTAAAAACAATATGCCTCGGTCACAGCATTACAATAAT
GTATTTCGTCCATCCTCCTCTTTGCTAGACGACCAGGCCCTCGATGGTGG
CTTCGGCGGCAGCAGCGCCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGAA
GTAGTGGGAATAGTAGTAGTGGTGAAGACTCCGACGACGACGAAGAAATT
CATCACCACCATCACCACCAAAACGGTCACCGTCCCGGCTCATTCTCTAC
CTCTTCCTCCTCCAGCAGCAGCAGCGGCAGTAGCCACAACAACGGCAGTC
CCGACCACTTGACACATGCAGAGCTCACCCTCTTCTCCTCCTTCGTCGCC
CATGCCCACTTGGCCCTTCCCGACTGGGATGAAGAGGATATGGGCAAACT
CATCTATCTCATCTCGACGTTCAAAAACAAACATTTAAATTCCAAAAAAT
TGTTTCACTTCATTGCCTCTTCCTGCCCTGAATACGTCACGGGACCCTTC
CTGGCTCGTGTGATGGGACCGGAGGGCGGGAGGAAGGAAAAGAGAAAGGG
CAGGTTGCTAAATGCGAAGCAGGTGGTGCAATTAATCGAGGCGGGAGCTC
GGAATAAAGAGGACCTGATCTTGAAGATTGTGGACGTGCTGGAGCACCAG
gtgaaccctccctccctccctccctccctccattcctcccttcttccctc
cctccctcctctacttcacgtccaactaccctccctgcctccctcccttg
ccttgggtgacggctcattccatccctttgctccttcccttccttccctc
tctcctcagGTCCTGTCGTTGTCGGACGAAGCGACTGCGTTATGCCTGGT
GGCTACTGTAGACGGACAGCACCCCTCCCTCAAGCGGTCCCTTGCCCTCG
CCCTCGGGGAGATGTGTGAATCGAAGGGTCAATTCATTTTCCTCCTGTCC
CTCTTTCAGGAACGGGGGAAGGGGGGGAGGGACGGGTGGATGAGGGAGGT
AGGGCGGGAGGCCGCTGCACTTTGGTGGGAGGATTTGGGCGCTGGAAGGG
GGGGGAGGAGGAGAAAGGGGAGGAAGAGGAGGGAGGGAGGGAGGGAGGAA
GAGGAGGAAGAAGAGCTGAGGAGGTTATACCCGGAGGTGGAGGAATTTTG
GGAGGGGATAAGGGAGAGGAGGGAGCAGGAGGGAGGGGAGGAGGACGAGG
AGGACGAGGAGGGGAACCTGAAGGGTTTTGTGGTGAGGGATGAGGAGGGG
TTGGAGGAGGAGGGGGGGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGA
AGAGGGGTTGGATGAGGAGGAAGGGGAGGAGGAGGAGGAGGAAGAAGGGA
TAAAAAAGgttaggaaaagaaatcgggaaaaaggcaagaagggagagaat
aagagggaggaggtggaggaggtcggggacgaggagggggggatggagag
aagagggagaaacagGAAAAGGAGAAAGAAAAAGAAAAAGAGGAGGAGAA
GGAGGAGGAGAAGCTGAAGGAGGAAAAGAGGACTGGACGCATCAAGAACA
AGGACATTCGTCGACGGCAAGAGAAGAGGAGGAAGAGGGAGAGGGAGGCA
GTGGGGGGGGAGAGAAAGAAGGAGGTGGGTGAAAAGGAGGAGGAGGGGGG
AAAGAAGAAGGAGGAGGCTGTGGGAGGGAAGAGAAAGAAGAAGGAGGTGG
GGGAAGAGGAGGAGGAGGAGGAAGGGGAAGGGGGATGGAAAGGGGAAAAG
AAGGAGGAGGAAAATGGCGGGAGGATGGGGAAGGGGGCAAAGAAGGAGGA
GAAGAAGAAGAAGAAGAAGAAGAACCGCAACAAGAAGAGGAGTGGGATGA
TAGCTGGCCGGCAAGGAGAAGGAGAAAGAGAAGGGGGAGGGAAAGAAAAA
GAGAGAGGAGAAGGGAGGCACGCAAGCGTGAAACGTCGACGGGTGGTGTC
TGATTAA
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protein sequence of NO28G01410.1

>NO28G01410.1-protein ID=NO28G01410.1-protein|Name=NO28G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp
MATVIIDHYFHSTFPRGLSPSLFTTPPSRHRQARQALVCEITRQILSSFL
LPGRQRPLRVSCLTALCPPRSTTSSPPVSIPTSRGHHSTPSKLRNIRFKN
NMPRSQHYNNVFRPSSSLLDDQALDGGFGGSSASSSSSSSSSRSSGNSSS
GEDSDDDEEIHHHHHHQNGHRPGSFSTSSSSSSSSGSSHNNGSPDHLTHA
ELTLFSSFVAHAHLALPDWDEEDMGKLIYLISTFKNKHLNSKKLFHFIAS
SCPEYVTGPFLARVMGPEGGRKEKRKGRLLNAKQVVQLIEAGARNKEDLI
LKIVDVLEHQVLSLSDEATALCLVATVDGQHPSLKRSLALALGEMCESKG
QFIFLLSLFQERGKGGRDGWMREVGREAAALWWEDLGAGRGGRRRKGRKR
REGGREEEEEEELRRLYPEVEEFWEGIRERREQEGGEEDEEDEEGNLKGF
VVRDEEGLEEEGGEEEEGEEGEEEEGLDEEEGEEEEEEEGIKKEKEKEKE
KEEEKEEEKLKEEKRTGRIKNKDIRRRQEKRRKREREAVGGERKKEVGEK
EEEGGKKKEEAVGGKRKKKEVGEEEEEEEGEGGWKGEKKEEENGGRMGKG
AKKEEKKKKKKKNRNKKRSGMIAGRQGEGEREGGGKEKERGEGRHASVKR
RRVVSD*
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Synonyms
Publications