NO28G01340, NO28G01340 (gene) Nannochloropsis oceanica

Overview
NameNO28G01340
Unique NameNO28G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2294
Alignment locationchr28:421745..424038 +

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Properties
Property NameValue
DescriptionCyclin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:421745..424038 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0019901protein kinase binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0065009regulation of molecular function
GO:0007049cell cycle
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR036915Cyclin-like_sf
IPR013922Cyclin_PHO80-like
Homology
BLAST of NO28G01340 vs. NCBI_GenBank
Match: EWM20851.1 (Cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 251.9 bits (642), Expect = 2.600e-63
Identity = 125/182 (68.68%), Postives = 147/182 (80.77%), Query Frame = 0
Query:  129 PTTAFLLSLREKDAKEVANRCLTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYPSTFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYKSLSVFRQESP 311
            P  AFL +L EKD  EVA+RCL PLL+TVVD N+RLQ AGAQPP R +IFRL++RP + +KTYL R+VE TG ST+CLITALIYLDR+SAKEYPS+ T+HRLLLA+++LA KHTGDG+    WSY  Y +A GVP  ELK+LE+EMLRML+YDL VPP QL AYGTK  QYK L VFRQESP
Sbjct:  145 PIAAFLRTLPEKDPAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYPSSLTVHRLLLAAVMLAAKHTGDGN--SSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQYKKLPVFRQESP 324          
BLAST of NO28G01340 vs. NCBI_GenBank
Match: XP_008669070.1 (cyclin-P4-1 [Zea mays] >ONM15343.1 Cyclin-U4-2 [Zea mays])

HSP 1 Score: 89.4 bits (220), Expect = 2.200e-14
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 0
Query:  150 LTPLLETVVDTNDRLQ---AAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRV--SAKEYPS--TFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGT 295
            L+ LLE VV+ ND +    AAG +  A PS FR   RP + +++Y+ R+    GCS  C + A +YLDR+   A+  P+  ++T+HRLL+ ++L A K   D   C   +Y  +A+  G+  SE+  LEV+ L  + +DL V P     Y T
Sbjct:   19 LSALLERVVERNDAVADELAAGTESAAPPSAFRATARPDISVRSYMARIARFAGCSPACYVVAYVYLDRLLRRARSAPAVDSYTVHRLLITAVLAAVKFMDD--VCYNNAY--FARVGGISLSEMNYLEVDFLFAVGFDLNVSPETFGHYCT 166          
BLAST of NO28G01340 vs. NCBI_GenBank
Match: CDH50596.1 (pho85p cyclin of the pho80p pcl7p [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13
Identity = 46/153 (30.07%), Postives = 84/153 (54.90%), Query Frame = 0
Query:  150 LTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYP---STFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQY 300
            +T LLE +  TND+LQA+     +  + F  +  P + + +YL R+++   C+ +C ++ L+Y DR+S         +F IHRL++A +++A K   D      ++   YA+  G+P +EL  LE+E L +  ++L V   +L  YG ++  +
Sbjct:   27 MTQLLERITKTNDKLQASSHDKRSAYTCFHARSIPTISIHSYLNRILKYCPCTNECFLSLLVYFDRMSRNATGLRIDSFNIHRLVIAGIMVASKFYSD----IFFTNTRYAKVGGLPVAELNALELEFLHLNDFNLNVTIEELQQYGDQLLMH 175          
BLAST of NO28G01340 vs. NCBI_GenBank
Match: OBZ84870.1 (PHO85 cyclin-like protein psl1 [Choanephora cucurbitarum])

HSP 1 Score: 85.5 bits (210), Expect = 3.200e-13
Identity = 51/168 (30.36%), Postives = 94/168 (55.95%), Query Frame = 0
Query:  148 RCLTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSA-KEYP---STFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQY---KSLSVFRQE 309
            + LT LLE +   ND L      P +  + F  +  P + ++ YL R+++   C+ +C ++ L+Y DR+S  KE+     +++IHRL++A ++++ K   D      ++   YA+  G+P  EL +LE+E LRM  Y++ VP  +L  YG ++  +   +  +V+R+E
Sbjct:   23 KMLTCLLEKITKANDSLH---GPPSSFYTCFHARSIPTIDIQAYLIRILKYCPCANECFLSLLVYFDRMSQNKEHALRIDSYSIHRLIIAGIMISSKFFSD----VFFTNTRYAKVGGLPVKELNLLELEFLRMNNYNINVPFEELQRYGDQLLMHSIKEREAVYRRE 183          
BLAST of NO28G01340 vs. NCBI_GenBank
Match: XP_006397655.1 (cyclin-U4-1 [Eutrema salsugineum] >ESQ39108.1 hypothetical protein EUTSA_v10001641mg [Eutrema salsugineum])

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12
Identity = 49/147 (33.33%), Postives = 81/147 (55.10%), Query Frame = 0
Query:  150 LTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYPS----TFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAY 293
            L+ LLE V ++NDR +    Q   R S+F    RP + +++YL R+ +   CS  C + A +YLDR + ++ PS    +F +HRLL+ S++++ K   D      ++   YA+  G+   E+ +LE++ L  L +DL V P    AY
Sbjct:   17 LSSLLERVAESNDRTRRVTTQ-SQRVSVFHGLSRPTITIQSYLERIFKYANCSPSCFVVAYVYLDRFTHRQ-PSLPINSFNVHRLLITSVMVSAKFLDD----LYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHAY 157          
BLAST of NO28G01340 vs. NCBI_GenBank
Match: KFK37277.1 (hypothetical protein AALP_AA4G236200 [Arabis alpina])

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12
Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = 0
Query:  150 LTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYPS----TFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYKSLSVFRQ 308
            L+ LLE V  +ND+ +    Q   R S+F    RP + +++YL R+ +   CS  C + A +YLDR + ++ PS    +F +HRLL+ S++++ K   D      ++   YA+  G+   E+ +LE++ L  L +DL V P    AY T  +  K +++  Q
Sbjct:   17 LSSLLEQVAQSNDQTRRVTTQ-TQRVSVFHGLSRPTITIQSYLERIYKYANCSPSCFVVAYVYLDRFTHRQ-PSLPINSFNVHRLLITSVMVSAKFLDD----LYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVKPNTFQAYFT--YLQKEMNLLHQ 170          
BLAST of NO28G01340 vs. NCBI_GenBank
Match: ORX84918.1 (cyclin-domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12
Identity = 51/159 (32.08%), Postives = 82/159 (51.57%), Query Frame = 0
Query:  157 VVDTNDRL--QAAGAQPPARPSI--FRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDR-------VSAKEYPST---FTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYKS 302
            +VD ND +   A  A PP  PS   F  K+ P + +  YL R+++   C+ +C I  LIY DR       V   + P T   + +HRL++  +++A K   D      ++ + YA+  G+P  EL  LE+E L +++Y + V  P+L AY  ++  Y S
Sbjct:   26 LVDANDPVPHSADPAGPPKPPSYTPFHAKRLPNITIHLYLSRILKYCPCNNECFIAILIYFDRMTKFYNQVHPHKRPFTIDAYNVHRLVIVGIMIASKFFSD----VYYTNVRYAKVGGLPVKELNNLELEFLYLVQYQVNVGVPELQAYADQLLNYSS 180          
BLAST of NO28G01340 vs. NCBI_GenBank
Match: CEP09267.1 (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 81.3 bits (199), Expect = 6.000e-12
Identity = 53/184 (28.80%), Postives = 92/184 (50.00%), Query Frame = 0
Query:  120 LPSPPTADAPTTAFLLSLREKDAKEVANRCLTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYP----STFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQY 300
            L   P++   TT+    L      E  N  LT LL+ +   ND LQ    Q       F  +  P + + +YL R+++   C+ +C ++ L+Y DR+S  +       ++ IHRL++A +++++K   D      ++   YA+  G+P  EL  LE+E LRM  Y++ +P  QL  YG ++  +
Sbjct:    7 LSRQPSSLLATTSPKFDLANFPVTETIN-MLTCLLKKITTANDSLQ----QKQTNYKYFHARSLPSIDINSYLLRILKYCPCANECFLSLLVYFDRMSQNKLDPLRIDSYNIHRLIIAGVMISNKFFCD----VFYTNARYAKVGGLPVKELNSLELEFLRMNDYNIYIPLEQLQQYGDQLLMH 181          
BLAST of NO28G01340 vs. NCBI_GenBank
Match: GAN07730.1 (conserved hypothetical protein [Mucor ambiguus])

HSP 1 Score: 80.9 bits (198), Expect = 7.800e-12
Identity = 47/160 (29.38%), Postives = 81/160 (50.62%), Query Frame = 0
Query:  148 RCLTPLLETVVDTNDRLQAAGAQPPARP-SIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKE--------YPSTFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQ 299
            + LT LLE +   NDRL     Q  +R  + F  +  P + +  Y  R+++   C+ +CLI  L+Y DR++  +        +  ++ IHRL++  L+++ K   D      ++   YA+  G+P +EL  LE+E LR+  Y L V    L +YG  + +
Sbjct:   18 KLLTTLLEKITHNNDRLHPDAQQQKSRSYTCFHARSIPSITIHAYFTRILKYCPCANECLIAILVYFDRMTQPDPKLGLKPLHIDSYNIHRLIITGLMISSKLYSD----VFFTNTRYAKVGGLPVTELNALELEFLRLNNYSLFVDIDMLQSYGDNLLE 173          
BLAST of NO28G01340 vs. NCBI_GenBank
Match: ORX89200.1 (cyclin-domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 80.9 bits (198), Expect = 7.800e-12
Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 0
Query:  153 LLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRV--SAKEYPSTF-----TIHRLLLASLLLADKHTGDGSGCKGWSYLT---YAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKI 297
            +L++++  ND   A GA+    PS F  +  P + ++ YL R+++ T  + +CL++ALIYLDR+   +KE  S F      IHRLL+  +++A K++ D        Y T   YAQ AG+   +L  LE+E L + ++DL V P  LL +G  +
Sbjct:   21 MLKSMIAIND---ACGAR---SPSCFHSRSIPTIGVEEYLLRILKYTPFNNECLLSALIYLDRIVRCSKETASPFAINSYNIHRLLVTGIVIASKYSSD-------VYFTNSRYAQVAGITLGDLNALELEFLFLSKFDLMVHPLDLLKFGNHL 161          
The following BLAST results are available for this feature:
BLAST of NO28G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20851.12.600e-6368.68Cyclin-like protein [Nannochloropsis gaditana][more]
XP_008669070.12.200e-1436.84cyclin-P4-1 [Zea mays] >ONM15343.1 Cyclin-U4-2 [Ze... [more]
CDH50596.11.900e-1330.07pho85p cyclin of the pho80p pcl7p [Lichtheimia cor... [more]
OBZ84870.13.200e-1330.36PHO85 cyclin-like protein psl1 [Choanephora cucurb... [more]
XP_006397655.14.600e-1233.33cyclin-U4-1 [Eutrema salsugineum] >ESQ39108.1 hypo... [more]
KFK37277.14.600e-1231.48hypothetical protein AALP_AA4G236200 [Arabis alpin... [more]
ORX84918.14.600e-1232.08cyclin-domain-containing protein [Basidiobolus mer... [more]
CEP09267.16.000e-1228.80hypothetical protein [Parasitella parasitica][more]
GAN07730.17.800e-1229.38conserved hypothetical protein [Mucor ambiguus][more]
ORX89200.17.800e-1235.06cyclin-domain-containing protein [Basidiobolus mer... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01340.1NO28G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642993gene_9865Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100514g4gene9567Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01340.1NO28G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01340 ID=NO28G01340|Name=NO28G01340|organism=Nannochloropsis oceanica|type=gene|length=2294bp
ATCAGAGACAGAAAGGGTGCAGGAGCAGGGTCCTCTCTCCAGTCTTTCCT
GGGCCTTGTCCGTAGCGACAACAGCAGCCGCAGCAGCCGCAGCAGCAGCA
GCAGCGTAGCAGCAGCAGCAACATGATGGAGACACATCAATCAAAAAGGA
GAAGGATCAATAGCATTCCATCATCGCCACCACACTCCTCCCGTCTCTGC
CTCTCCCTCCTCCTCTTCCTCGTCTCCTCCCTCGCCTCCGCTGCTGTCTA
TAGCTCAGATAGCTACCCTTCTCCTCCTCCCCCTCCCCCTCCTCCTTCTC
CCCCATCTCCTCCTTCCCAACACTATCCCTCCTATTACAGCTACCCTAAT
CCTCCACCTCATCCTCTTCCGTCTCCTCACCACCAACTACATGAACAACA
CCAACTCTCCTCCTTCTCCCAAGCCCCTCCTCCTCCTCCTCCTCCACCAC
CACTCCCCTCATTCCCCCCGCCCTTTGCCCTCCCCTCCCCTCCAACGGCA
GACGCACCTACCACTGCCTTTCTTCTCTCTCTGAGGGAAAAAGATGCCAA
GGAGGTAGCGAACCGTTGCCTCACCCCGCTCCTCGAGACAGTGGTGGATA
CGAACGATAGGCTGCAGGCTGCGGGGGCTCAGCCTCCTGCACGTCCTTCC
ATCTTCCGTTTGAAAAAACGCCCGAGAGTGCCGTTGAAGACTTATCTGGG
TCGACTAGTAGAgtacggagggaaggagggagagagggatggaggaaagg
aaggaaaggaaggaaaggaaggaaggaaaggagggagggaggaaaaagat
ttctgagggagaaggtttcgcttattctgaatccctccattagtccgccc
cttcctctctcccgaagtagtttgcgaaagagggctaaagatcgatctgt
tctatgtctgatcagcatctcccactccctccctacctcccttcctccct
gccgatgccgatagGGCCACGGGCTGCTCGACCAAGTGCCTTATCACCGC
CCTAATCTACCTCGATCGCGTCTCGGCGAAAGAATATCCATCTACCTTCA
CAATACACCGgtatctctccaccctccctccctccttacctccctccctc
cctgcctgcctccctccctcccttgcttggttggtagcgttggtcgacgt
tttgcattatctcccttcctccgttccttcctcttctctcctccttccct
ccctccctccctccctccctccctccttccctccctttacctccgaccct
cgtctgctgtggaattaaaatactacctccctcctgcccttcttcctttc
tgccttctctccctcccgcagACTGCTCCTCGCCTCCCTCCTGCTCGCGG
ACAAGCACACGGGCGATGGGAGCGGCTGCAAAGGCTGGTCATACCTTACG
TACGCTCAAGCGGCCGGGGTGCCAGAGAGTGAACTGAAGgtacagagcta
tcatccactccctccctccctccctccctgcctccctccctccctccgag
tcgtcgagtccgtccccaccactgcagtcacctactggttaatcctaacc
cctccctccctccctcttccctccctcttccctccctccctccccccctc
tctgtctccctctctgtctccctcgctcagGTCCTGGAGGTGGAGATGCT
TCGCATGCTGCGCTATGACCTAACCGTCCCTCCTCCTCAACTCCTCGCCT
ATGGCACCAAGATATTTCAATACAAAAGTTTATCCGTATTTCGGCAAGAA
AGTCCCTGAGGCTCCTCCCTCCCTCCCCCCCTCCCTCCCTCTCCCCCTCC
CTCCCTCCCTCCGGTCGCTTCTCGTCCCTCTTTGTCGTCCTCCTTCCGAT
CGCCTCACCTTCGGCACGGAAAACACCACAACATTAACTTTAAATTAACG
GTAAGAATAAAGACATACAAAGAGACAAAAAGTGATCACTCAAGAATTTG
GAAGGTTGTGGCTTATCGGTCTATCTCCCGACACTCAAAATAATAGTTAT
TTTACATGTCATGTAATTGTTGGAAAAGAATTCGAACGAAAGCCTGTCCG
TTGCTCACCAGCTTCTATGAATGTGAGAGAAAGAAGAGAATGAAAGGGAG
AAGGGAGGATGACGTGCGCCGAGGGCGAACGCGATGGGGGTCATTTGACT
CGAAGAAAGACGACGAAAAAGACAAGAAGGAAGGGCATTAAAGAATTCAT
GTATTGTGACAGAGGGACAGAGACCGAGAGAGATGGAGGTAAAGGGATAG
ATAGATAAATAAAGGAAGAGAATGGAAATTGTGCCTCCGCTTGA
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protein sequence of NO28G01340.1

>NO28G01340.1-protein ID=NO28G01340.1-protein|Name=NO28G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MMETHQSKRRRINSIPSSPPHSSRLCLSLLLFLVSSLASAAVYSSDSYPS
PPPPPPPPSPPSPPSQHYPSYYSYPNPPPHPLPSPHHQLHEQHQLSSFSQ
APPPPPPPPPLPSFPPPFALPSPPTADAPTTAFLLSLREKDAKEVANRCL
TPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATG
CSTKCLITALIYLDRVSAKEYPSTFTIHRLLLASLLLADKHTGDGSGCKG
WSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYK
SLSVFRQESP*
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Synonyms
Publications