NO28G01340, NO28G01340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G01340 vs. NCBI_GenBank
Match: EWM20851.1 (Cyclin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 251.9 bits (642), Expect = 2.600e-63 Identity = 125/182 (68.68%), Postives = 147/182 (80.77%), Query Frame = 0 Query: 129 PTTAFLLSLREKDAKEVANRCLTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYPSTFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYKSLSVFRQESP 311 P AFL +L EKD EVA+RCL PLL+TVVD N+RLQ AGAQPP R +IFRL++RP + +KTYL R+VE TG ST+CLITALIYLDR+SAKEYPS+ T+HRLLLA+++LA KHTGDG+ WSY Y +A GVP ELK+LE+EMLRML+YDL VPP QL AYGTK QYK L VFRQESP Sbjct: 145 PIAAFLRTLPEKDPAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYPSSLTVHRLLLAAVMLAAKHTGDGN--SSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQYKKLPVFRQESP 324
BLAST of NO28G01340 vs. NCBI_GenBank
Match: XP_008669070.1 (cyclin-P4-1 [Zea mays] >ONM15343.1 Cyclin-U4-2 [Zea mays]) HSP 1 Score: 89.4 bits (220), Expect = 2.200e-14 Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 0 Query: 150 LTPLLETVVDTNDRLQ---AAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRV--SAKEYPS--TFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGT 295 L+ LLE VV+ ND + AAG + A PS FR RP + +++Y+ R+ GCS C + A +YLDR+ A+ P+ ++T+HRLL+ ++L A K D C +Y +A+ G+ SE+ LEV+ L + +DL V P Y T Sbjct: 19 LSALLERVVERNDAVADELAAGTESAAPPSAFRATARPDISVRSYMARIARFAGCSPACYVVAYVYLDRLLRRARSAPAVDSYTVHRLLITAVLAAVKFMDD--VCYNNAY--FARVGGISLSEMNYLEVDFLFAVGFDLNVSPETFGHYCT 166
BLAST of NO28G01340 vs. NCBI_GenBank
Match: CDH50596.1 (pho85p cyclin of the pho80p pcl7p [Lichtheimia corymbifera JMRC:FSU:9682]) HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13 Identity = 46/153 (30.07%), Postives = 84/153 (54.90%), Query Frame = 0 Query: 150 LTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYP---STFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQY 300 +T LLE + TND+LQA+ + + F + P + + +YL R+++ C+ +C ++ L+Y DR+S +F IHRL++A +++A K D ++ YA+ G+P +EL LE+E L + ++L V +L YG ++ + Sbjct: 27 MTQLLERITKTNDKLQASSHDKRSAYTCFHARSIPTISIHSYLNRILKYCPCTNECFLSLLVYFDRMSRNATGLRIDSFNIHRLVIAGIMVASKFYSD----IFFTNTRYAKVGGLPVAELNALELEFLHLNDFNLNVTIEELQQYGDQLLMH 175
BLAST of NO28G01340 vs. NCBI_GenBank
Match: OBZ84870.1 (PHO85 cyclin-like protein psl1 [Choanephora cucurbitarum]) HSP 1 Score: 85.5 bits (210), Expect = 3.200e-13 Identity = 51/168 (30.36%), Postives = 94/168 (55.95%), Query Frame = 0 Query: 148 RCLTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSA-KEYP---STFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQY---KSLSVFRQE 309 + LT LLE + ND L P + + F + P + ++ YL R+++ C+ +C ++ L+Y DR+S KE+ +++IHRL++A ++++ K D ++ YA+ G+P EL +LE+E LRM Y++ VP +L YG ++ + + +V+R+E Sbjct: 23 KMLTCLLEKITKANDSLH---GPPSSFYTCFHARSIPTIDIQAYLIRILKYCPCANECFLSLLVYFDRMSQNKEHALRIDSYSIHRLIIAGIMISSKFFSD----VFFTNTRYAKVGGLPVKELNLLELEFLRMNNYNINVPFEELQRYGDQLLMHSIKEREAVYRRE 183
BLAST of NO28G01340 vs. NCBI_GenBank
Match: XP_006397655.1 (cyclin-U4-1 [Eutrema salsugineum] >ESQ39108.1 hypothetical protein EUTSA_v10001641mg [Eutrema salsugineum]) HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12 Identity = 49/147 (33.33%), Postives = 81/147 (55.10%), Query Frame = 0 Query: 150 LTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYPS----TFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAY 293 L+ LLE V ++NDR + Q R S+F RP + +++YL R+ + CS C + A +YLDR + ++ PS +F +HRLL+ S++++ K D ++ YA+ G+ E+ +LE++ L L +DL V P AY Sbjct: 17 LSSLLERVAESNDRTRRVTTQ-SQRVSVFHGLSRPTITIQSYLERIFKYANCSPSCFVVAYVYLDRFTHRQ-PSLPINSFNVHRLLITSVMVSAKFLDD----LYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHAY 157
BLAST of NO28G01340 vs. NCBI_GenBank
Match: KFK37277.1 (hypothetical protein AALP_AA4G236200 [Arabis alpina]) HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12 Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = 0 Query: 150 LTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYPS----TFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYKSLSVFRQ 308 L+ LLE V +ND+ + Q R S+F RP + +++YL R+ + CS C + A +YLDR + ++ PS +F +HRLL+ S++++ K D ++ YA+ G+ E+ +LE++ L L +DL V P AY T + K +++ Q Sbjct: 17 LSSLLEQVAQSNDQTRRVTTQ-TQRVSVFHGLSRPTITIQSYLERIYKYANCSPSCFVVAYVYLDRFTHRQ-PSLPINSFNVHRLLITSVMVSAKFLDD----LYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVKPNTFQAYFT--YLQKEMNLLHQ 170
BLAST of NO28G01340 vs. NCBI_GenBank
Match: ORX84918.1 (cyclin-domain-containing protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12 Identity = 51/159 (32.08%), Postives = 82/159 (51.57%), Query Frame = 0 Query: 157 VVDTNDRL--QAAGAQPPARPSI--FRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDR-------VSAKEYPST---FTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYKS 302 +VD ND + A A PP PS F K+ P + + YL R+++ C+ +C I LIY DR V + P T + +HRL++ +++A K D ++ + YA+ G+P EL LE+E L +++Y + V P+L AY ++ Y S Sbjct: 26 LVDANDPVPHSADPAGPPKPPSYTPFHAKRLPNITIHLYLSRILKYCPCNNECFIAILIYFDRMTKFYNQVHPHKRPFTIDAYNVHRLVIVGIMIASKFFSD----VYYTNVRYAKVGGLPVKELNNLELEFLYLVQYQVNVGVPELQAYADQLLNYSS 180
BLAST of NO28G01340 vs. NCBI_GenBank
Match: CEP09267.1 (hypothetical protein [Parasitella parasitica]) HSP 1 Score: 81.3 bits (199), Expect = 6.000e-12 Identity = 53/184 (28.80%), Postives = 92/184 (50.00%), Query Frame = 0 Query: 120 LPSPPTADAPTTAFLLSLREKDAKEVANRCLTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYP----STFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQY 300 L P++ TT+ L E N LT LL+ + ND LQ Q F + P + + +YL R+++ C+ +C ++ L+Y DR+S + ++ IHRL++A +++++K D ++ YA+ G+P EL LE+E LRM Y++ +P QL YG ++ + Sbjct: 7 LSRQPSSLLATTSPKFDLANFPVTETIN-MLTCLLKKITTANDSLQ----QKQTNYKYFHARSLPSIDINSYLLRILKYCPCANECFLSLLVYFDRMSQNKLDPLRIDSYNIHRLIIAGVMISNKFFCD----VFYTNARYAKVGGLPVKELNSLELEFLRMNDYNIYIPLEQLQQYGDQLLMH 181
BLAST of NO28G01340 vs. NCBI_GenBank
Match: GAN07730.1 (conserved hypothetical protein [Mucor ambiguus]) HSP 1 Score: 80.9 bits (198), Expect = 7.800e-12 Identity = 47/160 (29.38%), Postives = 81/160 (50.62%), Query Frame = 0 Query: 148 RCLTPLLETVVDTNDRLQAAGAQPPARP-SIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKE--------YPSTFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQ 299 + LT LLE + NDRL Q +R + F + P + + Y R+++ C+ +CLI L+Y DR++ + + ++ IHRL++ L+++ K D ++ YA+ G+P +EL LE+E LR+ Y L V L +YG + + Sbjct: 18 KLLTTLLEKITHNNDRLHPDAQQQKSRSYTCFHARSIPSITIHAYFTRILKYCPCANECLIAILVYFDRMTQPDPKLGLKPLHIDSYNIHRLIITGLMISSKLYSD----VFFTNTRYAKVGGLPVTELNALELEFLRLNNYSLFVDIDMLQSYGDNLLE 173
BLAST of NO28G01340 vs. NCBI_GenBank
Match: ORX89200.1 (cyclin-domain-containing protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 80.9 bits (198), Expect = 7.800e-12 Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 0 Query: 153 LLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRV--SAKEYPSTF-----TIHRLLLASLLLADKHTGDGSGCKGWSYLT---YAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKI 297 +L++++ ND A GA+ PS F + P + ++ YL R+++ T + +CL++ALIYLDR+ +KE S F IHRLL+ +++A K++ D Y T YAQ AG+ +L LE+E L + ++DL V P LL +G + Sbjct: 21 MLKSMIAIND---ACGAR---SPSCFHSRSIPTIGVEEYLLRILKYTPFNNECLLSALIYLDRIVRCSKETASPFAINSYNIHRLLVTGIVIASKYSSD-------VYFTNSRYAQVAGITLGDLNALELEFLFLSKFDLMVHPLDLLKFGNHL 161 The following BLAST results are available for this feature:
BLAST of NO28G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G01340 ID=NO28G01340|Name=NO28G01340|organism=Nannochloropsis oceanica|type=gene|length=2294bpback to top protein sequence of NO28G01340.1 >NO28G01340.1-protein ID=NO28G01340.1-protein|Name=NO28G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bpback to top Synonyms
Publications
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