NO28G01340.1, NO28G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01340.1
Unique NameNO28G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1590
Alignment locationchr28:421745..424038 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:421745..424038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01340.1 vs.
Match: EWM20851.1 (Cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 259.6 bits (662), Expect = 1.200e-65
Identity = 158/266 (59.40%), Postives = 183/266 (68.80%), Query Frame = 0 
Query:   47 SYPSPPPPPPPPSPPSPPSQHYPSYYS--YPNPPPHPLPSPHHQLHEQHQLSSFSQAPPPPPPPPPLPSFPPPFALPSPPTADAPTTAFLLSLREKDAKEVANRCLTPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRVSAKEYPSTFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYKSLSVFRQESP 311
            S  SP  P  PPS  S PS     Y S  +P+P P PLP   H                    PP LP  PPPFALPSPP+   P  AFL +L EKD  EVA+RCL PLL+TVVD N+RLQ AGAQPP R +IFRL++RP + +KTYL R+VE TG ST+CLITALIYLDR+SAKEYPS+ T+HRLLLA+++LA KHTGDG+    WSY  Y +A GVP  ELK+LE+EMLRML+YDL VPP QL AYGTK  QYK L VFRQESP
Sbjct:   81 SLSSPEYPSFPPSSGSFPSSSAHEYISPSFPSPEP-PLPQAGHH-------------------PPYLPPRPPPFALPSPPSPSGPIAAFLRTLPEKDPAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYPSSLTVHRLLLAAVMLAAKHTGDGN--SSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQYKKLPVFRQESP 324
The following BLAST results are available for this feature:
BLAST of NO28G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20851.11.200e-6559.40Cyclin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01340NO28G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01340.1NO28G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01340.1.cds1NO28G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01340.1.cds2NO28G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01340.1.cds3NO28G01340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01340.1.cds4NO28G01340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01340.1 ID=NO28G01340.1|Name=NO28G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
ATCAGAGACAGAAAGGGTGCAGGAGCAGGGTCCTCTCTCCAGTCTTTCCT
GGGCCTTGTCCGTAGCGACAACAGCAGCCGCAGCAGCCGCAGCAGCAGCA
GCAGCGTAGCAGCAGCAGCAACATGATGGAGACACATCAATCAAAAAGGA
GAAGGATCAATAGCATTCCATCATCGCCACCACACTCCTCCCGTCTCTGC
CTCTCCCTCCTCCTCTTCCTCGTCTCCTCCCTCGCCTCCGCTGCTGTCTA
TAGCTCAGATAGCTACCCTTCTCCTCCTCCCCCTCCCCCTCCTCCTTCTC
CCCCATCTCCTCCTTCCCAACACTATCCCTCCTATTACAGCTACCCTAAT
CCTCCACCTCATCCTCTTCCGTCTCCTCACCACCAACTACATGAACAACA
CCAACTCTCCTCCTTCTCCCAAGCCCCTCCTCCTCCTCCTCCTCCACCAC
CACTCCCCTCATTCCCCCCGCCCTTTGCCCTCCCCTCCCCTCCAACGGCA
GACGCACCTACCACTGCCTTTCTTCTCTCTCTGAGGGAAAAAGATGCCAA
GGAGGTAGCGAACCGTTGCCTCACCCCGCTCCTCGAGACAGTGGTGGATA
CGAACGATAGGCTGCAGGCTGCGGGGGCTCAGCCTCCTGCACGTCCTTCC
ATCTTCCGTTTGAAAAAACGCCCGAGAGTGCCGTTGAAGACTTATCTGGG
TCGACTAGTAGAGGCCACGGGCTGCTCGACCAAGTGCCTTATCACCGCCC
TAATCTACCTCGATCGCGTCTCGGCGAAAGAATATCCATCTACCTTCACA
ATACACCGACTGCTCCTCGCCTCCCTCCTGCTCGCGGACAAGCACACGGG
CGATGGGAGCGGCTGCAAAGGCTGGTCATACCTTACGTACGCTCAAGCGG
CCGGGGTGCCAGAGAGTGAACTGAAGGTCCTGGAGGTGGAGATGCTTCGC
ATGCTGCGCTATGACCTAACCGTCCCTCCTCCTCAACTCCTCGCCTATGG
CACCAAGATATTTCAATACAAAAGTTTATCCGTATTTCGGCAAGAAAGTC
CCTGAGGCTCCTCCCTCCCTCCCCCCCTCCCTCCCTCTCCCCCTCCCTCC
CTCCCTCCGGTCGCTTCTCGTCCCTCTTTGTCGTCCTCCTTCCGATCGCC
TCACCTTCGGCACGGAAAACACCACAACATTAACTTTAAATTAACGGTAA
GAATAAAGACATACAAAGAGACAAAAAGTGATCACTCAAGAATTTGGAAG
GTTGTGGCTTATCGGTCTATCTCCCGACACTCAAAATAATAGTTATTTTA
CATGTCATGTAATTGTTGGAAAAGAATTCGAACGAAAGCCTGTCCGTTGC
TCACCAGCTTCTATGAATGTGAGAGAAAGAAGAGAATGAAAGGGAGAAGG
GAGGATGACGTGCGCCGAGGGCGAACGCGATGGGGGTCATTTGACTCGAA
GAAAGACGACGAAAAAGACAAGAAGGAAGGGCATTAAAGAATTCATGTAT
TGTGACAGAGGGACAGAGACCGAGAGAGATGGAGGTAAAGGGATAGATAG
ATAAATAAAGGAAGAGAATGGAAATTGTGCCTCCGCTTGA
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protein sequence of NO28G01340.1

>NO28G01340.1-protein ID=NO28G01340.1-protein|Name=NO28G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MMETHQSKRRRINSIPSSPPHSSRLCLSLLLFLVSSLASAAVYSSDSYPS
PPPPPPPPSPPSPPSQHYPSYYSYPNPPPHPLPSPHHQLHEQHQLSSFSQ
APPPPPPPPPLPSFPPPFALPSPPTADAPTTAFLLSLREKDAKEVANRCL
TPLLETVVDTNDRLQAAGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATG
CSTKCLITALIYLDRVSAKEYPSTFTIHRLLLASLLLADKHTGDGSGCKG
WSYLTYAQAAGVPESELKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYK
SLSVFRQESP*
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mRNA from alignment at chr28:421745..424038+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01340.1 ID=NO28G01340.1|Name=NO28G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp|location=Sequence derived from alignment at chr28:421745..424038+ (Nannochloropsis oceanica)
ATCAGAGACAGAAAGGGTGCAGGAGCAGGGTCCTCTCTCCAGTCTTTCCT
GGGCCTTGTCCGTAGCGACAACAGCAGCCGCAGCAGCCGCAGCAGCAGCA
GCAGCGTAGCAGCAGCAGCAACATGATGGAGACACATCAATCAAAAAGGA
GAAGGATCAATAGCATTCCATCATCGCCACCACACTCCTCCCGTCTCTGC
CTCTCCCTCCTCCTCTTCCTCGTCTCCTCCCTCGCCTCCGCTGCTGTCTA
TAGCTCAGATAGCTACCCTTCTCCTCCTCCCCCTCCCCCTCCTCCTTCTC
CCCCATCTCCTCCTTCCCAACACTATCCCTCCTATTACAGCTACCCTAAT
CCTCCACCTCATCCTCTTCCGTCTCCTCACCACCAACTACATGAACAACA
CCAACTCTCCTCCTTCTCCCAAGCCCCTCCTCCTCCTCCTCCTCCACCAC
CACTCCCCTCATTCCCCCCGCCCTTTGCCCTCCCCTCCCCTCCAACGGCA
GACGCACCTACCACTGCCTTTCTTCTCTCTCTGAGGGAAAAAGATGCCAA
GGAGGTAGCGAACCGTTGCCTCACCCCGCTCCTCGAGACAGTGGTGGATA
CGAACGATAGGCTGCAGGCTGCGGGGGCTCAGCCTCCTGCACGTCCTTCC
ATCTTCCGTTTGAAAAAACGCCCGAGAGTGCCGTTGAAGACTTATCTGGG
TCGACTAGTAGAGTACGGAGGGAAGGAGGGAGAGAGGGATGGAGGAAAGG
AAGGAAAGGAAGGAAAGGAAGGAAGGAAAGGAGGGAGGGAGGAAAAAGAT
TTCTGAGGGAGAAGGTTTCGCTTATTCTGAATCCCTCCATTAGTCCGCCC
CTTCCTCTCTCCCGAAGTAGTTTGCGAAAGAGGGCTAAAGATCGATCTGT
TCTATGTCTGATCAGCATCTCCCACTCCCTCCCTACCTCCCTTCCTCCCT
GCCGATGCCGATAGGGCCACGGGCTGCTCGACCAAGTGCCTTATCACCGC
CCTAATCTACCTCGATCGCGTCTCGGCGAAAGAATATCCATCTACCTTCA
CAATACACCGGTATCTCTCCACCCTCCCTCCCTCCTTACCTCCCTCCCTC
CCTGCCTGCCTCCCTCCCTCCCTTGCTTGGTTGGTAGCGTTGGTCGACGT
TTTGCATTATCTCCCTTCCTCCGTTCCTTCCTCTTCTCTCCTCCTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTTTACCTCCGACCCT
CGTCTGCTGTGGAATTAAAATACTACCTCCCTCCTGCCCTTCTTCCTTTC
TGCCTTCTCTCCCTCCCGCAGACTGCTCCTCGCCTCCCTCCTGCTCGCGG
ACAAGCACACGGGCGATGGGAGCGGCTGCAAAGGCTGGTCATACCTTACG
TACGCTCAAGCGGCCGGGGTGCCAGAGAGTGAACTGAAGGTACAGAGCTA
TCATCCACTCCCTCCCTCCCTCCCTCCCTGCCTCCCTCCCTCCCTCCGAG
TCGTCGAGTCCGTCCCCACCACTGCAGTCACCTACTGGTTAATCCTAACC
CCTCCCTCCCTCCCTCTTCCCTCCCTCTTCCCTCCCTCCCTCCCCCCCTC
TCTGTCTCCCTCTCTGTCTCCCTCGCTCAGGTCCTGGAGGTGGAGATGCT
TCGCATGCTGCGCTATGACCTAACCGTCCCTCCTCCTCAACTCCTCGCCT
ATGGCACCAAGATATTTCAATACAAAAGTTTATCCGTATTTCGGCAAGAA
AGTCCCTGAGGCTCCTCCCTCCCTCCCCCCCTCCCTCCCTCTCCCCCTCC
CTCCCTCCCTCCGGTCGCTTCTCGTCCCTCTTTGTCGTCCTCCTTCCGAT
CGCCTCACCTTCGGCACGGAAAACACCACAACATTAACTTTAAATTAACG
GTAAGAATAAAGACATACAAAGAGACAAAAAGTGATCACTCAAGAATTTG
GAAGGTTGTGGCTTATCGGTCTATCTCCCGACACTCAAAATAATAGTTAT
TTTACATGTCATGTAATTGTTGGAAAAGAATTCGAACGAAAGCCTGTCCG
TTGCTCACCAGCTTCTATGAATGTGAGAGAAAGAAGAGAATGAAAGGGAG
AAGGGAGGATGACGTGCGCCGAGGGCGAACGCGATGGGGGTCATTTGACT
CGAAGAAAGACGACGAAAAAGACAAGAAGGAAGGGCATTAAAGAATTCAT
GTATTGTGACAGAGGGACAGAGACCGAGAGAGATGGAGGTAAAGGGATAG
ATAGATAAATAAAGGAAGAGAATGGAAATTGTGCCTCCGCTTGA
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Coding sequence (CDS) from alignment at chr28:421745..424038+

>NO28G01340.1 ID=NO28G01340.1|Name=NO28G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr28:421745..424038+ (Nannochloropsis oceanica)
ATGATGGAGACACATCAATCAAAAAGGAGAAGGATCAATAGCATTCCATC
ATCGCCACCACACTCCTCCCGTCTCTGCCTCTCCCTCCTCCTCTTCCTCG
TCTCCTCCCTCGCCTCCGCTGCTGTCTATAGCTCAGATAGCTACCCTTCT
CCTCCTCCCCCTCCCCCTCCTCCTTCTCCCCCATCTCCTCCTTCCCAACA
CTATCCCTCCTATTACAGCTACCCTAATCCTCCACCTCATCCTCTTCCGT
CTCCTCACCACCAACTACATGAACAACACCAACTCTCCTCCTTCTCCCAA
GCCCCTCCTCCTCCTCCTCCTCCACCACCACTCCCCTCATTCCCCCCGCC
CTTTGCCCTCCCCTCCCCTCCAACGGCAGACGCACCTACCACTGCCTTTC
TTCTCTCTCTGAGGGAAAAAGATGCCAAGGAGGTAGCGAACCGTTGCCTC
ACCCCGCTCCTCGAGACAGTGGTGGATACGAACGATAGGCTGCAGGCTGC
GGGGGCTCAGCCTCCTGCACGTCCTTCCATCTTCCGTTTGAAAAAACGCC
CGAGAGTGCCGTTGAAGACTTATCTGGGTCGACTAGTAGAGGCCACGGGC
TGCTCGACCAAGTGCCTTATCACCGCCCTAATCTACCTCGATCGCGTCTC
GGCGAAAGAATATCCATCTACCTTCACAATACACCGACTGCTCCTCGCCT
CCCTCCTGCTCGCGGACAAGCACACGGGCGATGGGAGCGGCTGCAAAGGC
TGGTCATACCTTACGTACGCTCAAGCGGCCGGGGTGCCAGAGAGTGAACT
GAAGGTCCTGGAGGTGGAGATGCTTCGCATGCTGCGCTATGACCTAACCG
TCCCTCCTCCTCAACTCCTCGCCTATGGCACCAAGATATTTCAATACAAA
AGTTTATCCGTATTTCGGCAAGAAAGTCCCTGA
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Synonyms
Publications