NO28G01330, NO28G01330 (gene) Nannochloropsis oceanica

Overview
NameNO28G01330
Unique NameNO28G01330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2249
Alignment locationchr28:419101..421349 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:419101..421349 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01330.1NO28G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674500gene_9864Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01330.1NO28G01330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01330 ID=NO28G01330|Name=NO28G01330|organism=Nannochloropsis oceanica|type=gene|length=2249bp
ATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAATTTGGCATCATC
TTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCTGTGTGGACTTGG
GGAGgtacggatgaagggaggctggtaaaagtcaactgctttgagaaatg
gctgtcgtctttggacgaggatttgatgagacagggaagaatgggggagg
ggggagagggaaaaggagggatttccgacgggggggagggaggaatattt
gttaggtgcccctagcgtccttttcacccttttcctcctcattcccacca
ctccctccccctcgctctcctccacacccagGCAAGCGCAGCAGCCCATC
CTATCGCCCGGACACATATCTGCAGCAGCCGAAGCAGCGgtagcggcaac
agcagtaaagaagaacgcctcccatcatcgcagttgtccaaccgaggaag
ggagggttggatagagggagggaaggagggacagcaccggtcctgacacc
tctcttgtgccgggcacttatctcaccctcctagaccagggagggaggga
gggagggagggagagagggagggagggagggagggagagagggagggagg
gagggagggagggtgagacttatctcaccctcctagaccagggagggagg
gaaggagggagggagagagggagagagggagggagggagggtgagactta
tctcaccctcctagaccagggaggaagggagggagggagggagggaggga
gggagggtgcacgtcccatttactgccgggctaaagcccaccaggcgcac
cattaaagctcccattggaagggctcttcgacctagagggagaaagggag
ggagggagggagagagggaggaaaagaggattcacctgctgacccgacag
GTCCACGATGCGCCCGAAAAGGAGAAGTGTTTGATTCTTGCCGTGGAAAG
GAGCGAAGACTCGCTCCCGGGGAAGGCATCCCTCCTTCACTTCCTGGAGG
AAGAAGGAAAGGAGGGAGAGAGGGAGGATGGGATGACCTACATGCTGTTG
GGGTCGGGCTCGGATGCTTACAAGACTGTATGGACCAAGTCAATGCTCGT
GCAGCAGCAGCAGAAGCAGCAGAGAAGTAACAGTGATTGTCAAGCCCTCC
TCCTCGCCTTCCCTACCCCTCCCTCCCTCCGTCCCTCCCCCTCCTCCTCC
CCCACCACCGGCCATCACCATTTCAATCCTGACCATCAGCCCTGTCGTTC
TCCCTCCCTTCCTCGCCCCCTTCCTCCTGCCTCCAGgtcgggtcgtgcga
ccaacagtgagaaatgcaaacagacaaggtcgatctgtcgctcgatccaa
tccggcgatgaaggagggaagaagaagatgagggcgcctgtggaaaggac
aagcagttgggctgacggggcacgatttgagaagtcggtgcagtagggat
gggaaaggagggaggggggaaggaagcgaaggaggaggatggaggaggag
gaggaggaggaggaggatgacaatgagaggggaaagatacgtcgaaaatc
ggagaatgagtggagggaggaagggagggaggaaaggagaaggtcactta
ataggaaacagGATACATCGGAAGAAAGGAGAAGGAGGGGAGAAAGGGGA
GGGAGGGAGGGAGGGAGGAGGGGGACATGACCCTAAGgtgggggaaggga
gggaaggaaggagggagtgggtggagatgatgtcggagggggataagtat
ttctttgacttggggtgccagcaggggggtacagtaggccctcctccaat
tccatcaccagCAGCAGCAGCAGCAGCAGCACTCACAGCAGCAGCAGCAA
AGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGAAAGAATAAAAGGAATGGTCGAAGAAGGGGGAG
GGATAAAAGGAGGTTTGTCAATAGAGCAAACAACAATGTTACTTGCTCAG
CAGCAGCAGTACCACCACCACCACCACCAGCAGCAGTTTCAACCTCAAGT
AGGAGAAGGTAGTGCGGGAGGGGTAGGAATGGCTAATCTGACCCCTGGAG
GAGGGTTTGGCCTTGAGAGTCTCTTAAAACAACATGAGCAGTCGCAGCAA
CGGCGAGAAGGAGGAGAAGAGGGAGGAAGAGGAGGAGTAGGAGGGGACAG
AGATGTGGCGCAGACGGCAGCGGCCTTCTTATCAAGCATGAAGGCTTGA
back to top

protein sequence of NO28G01330.1

>NO28G01330.1-protein ID=NO28G01330.1-protein|Name=NO28G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MIATEGYESDSKNLASSSDEEKDDEYDLTCVDLGRQAQQPILSPGHISAA
AEAAVHDAPEKEKCLILAVERSEDSLPGKASLLHFLEEEGKEGEREDGMT
YMLLGSGSDAYKTVWTKSMLVQQQQKQQRSNSDCQALLLAFPTPPSLRPS
PSSSPTTGHHHFNPDHQPCRSPSLPRPLPPASRIHRKKGEGGEKGEGGRE
GGGGHDPKQQQQQQHSQQQQQRGGGGGGGGGGGGGGGGGGGGGERIKGMV
EEGGGIKGGLSIEQTTMLLAQQQQYHHHHHQQQFQPQVGEGSAGGVGMAN
LTPGGGFGLESLLKQHEQSQQRREGGEEGGRGGVGGDRDVAQTAAAFLSS
MKA*
back to top
Synonyms
Publications