NO28G01330.1, NO28G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01330.1
Unique NameNO28G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr28:419101..421349 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:419101..421349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01330NO28G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01330.1NO28G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01330.1.cds1NO28G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01330.1.cds2NO28G01330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01330.1.cds3NO28G01330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01330.1.cds4NO28G01330.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01330.1.cds5NO28G01330.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01330.1 ID=NO28G01330.1|Name=NO28G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAATTTGGCATCATC
TTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCTGTGTGGACTTGG
GGAGGCAAGCGCAGCAGCCCATCCTATCGCCCGGACACATATCTGCAGCA
GCCGAAGCAGCGGTCCACGATGCGCCCGAAAAGGAGAAGTGTTTGATTCT
TGCCGTGGAAAGGAGCGAAGACTCGCTCCCGGGGAAGGCATCCCTCCTTC
ACTTCCTGGAGGAAGAAGGAAAGGAGGGAGAGAGGGAGGATGGGATGACC
TACATGCTGTTGGGGTCGGGCTCGGATGCTTACAAGACTGTATGGACCAA
GTCAATGCTCGTGCAGCAGCAGCAGAAGCAGCAGAGAAGTAACAGTGATT
GTCAAGCCCTCCTCCTCGCCTTCCCTACCCCTCCCTCCCTCCGTCCCTCC
CCCTCCTCCTCCCCCACCACCGGCCATCACCATTTCAATCCTGACCATCA
GCCCTGTCGTTCTCCCTCCCTTCCTCGCCCCCTTCCTCCTGCCTCCAGGA
TACATCGGAAGAAAGGAGAAGGAGGGGAGAAAGGGGAGGGAGGGAGGGAG
GGAGGAGGGGGACATGACCCTAAGCAGCAGCAGCAGCAGCAGCACTCACA
GCAGCAGCAGCAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAATAAAAGGAATGGTC
GAAGAAGGGGGAGGGATAAAAGGAGGTTTGTCAATAGAGCAAACAACAAT
GTTACTTGCTCAGCAGCAGCAGTACCACCACCACCACCACCAGCAGCAGT
TTCAACCTCAAGTAGGAGAAGGTAGTGCGGGAGGGGTAGGAATGGCTAAT
CTGACCCCTGGAGGAGGGTTTGGCCTTGAGAGTCTCTTAAAACAACATGA
GCAGTCGCAGCAACGGCGAGAAGGAGGAGAAGAGGGAGGAAGAGGAGGAG
TAGGAGGGGACAGAGATGTGGCGCAGACGGCAGCGGCCTTCTTATCAAGC
ATGAAGGCTTGA
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protein sequence of NO28G01330.1

>NO28G01330.1-protein ID=NO28G01330.1-protein|Name=NO28G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MIATEGYESDSKNLASSSDEEKDDEYDLTCVDLGRQAQQPILSPGHISAA
AEAAVHDAPEKEKCLILAVERSEDSLPGKASLLHFLEEEGKEGEREDGMT
YMLLGSGSDAYKTVWTKSMLVQQQQKQQRSNSDCQALLLAFPTPPSLRPS
PSSSPTTGHHHFNPDHQPCRSPSLPRPLPPASRIHRKKGEGGEKGEGGRE
GGGGHDPKQQQQQQHSQQQQQRGGGGGGGGGGGGGGGGGGGGGERIKGMV
EEGGGIKGGLSIEQTTMLLAQQQQYHHHHHQQQFQPQVGEGSAGGVGMAN
LTPGGGFGLESLLKQHEQSQQRREGGEEGGRGGVGGDRDVAQTAAAFLSS
MKA*
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mRNA from alignment at chr28:419101..421349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01330.1 ID=NO28G01330.1|Name=NO28G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp|location=Sequence derived from alignment at chr28:419101..421349- (Nannochloropsis oceanica)
ATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAATTTGGCATCATC
TTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCTGTGTGGACTTGG
GGAGGTACGGATGAAGGGAGGCTGGTAAAAGTCAACTGCTTTGAGAAATG
GCTGTCGTCTTTGGACGAGGATTTGATGAGACAGGGAAGAATGGGGGAGG
GGGGAGAGGGAAAAGGAGGGATTTCCGACGGGGGGGAGGGAGGAATATTT
GTTAGGTGCCCCTAGCGTCCTTTTCACCCTTTTCCTCCTCATTCCCACCA
CTCCCTCCCCCTCGCTCTCCTCCACACCCAGGCAAGCGCAGCAGCCCATC
CTATCGCCCGGACACATATCTGCAGCAGCCGAAGCAGCGGTAGCGGCAAC
AGCAGTAAAGAAGAACGCCTCCCATCATCGCAGTTGTCCAACCGAGGAAG
GGAGGGTTGGATAGAGGGAGGGAAGGAGGGACAGCACCGGTCCTGACACC
TCTCTTGTGCCGGGCACTTATCTCACCCTCCTAGACCAGGGAGGGAGGGA
GGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGG
GAGGGAGGGAGGGTGAGACTTATCTCACCCTCCTAGACCAGGGAGGGAGG
GAAGGAGGGAGGGAGAGAGGGAGAGAGGGAGGGAGGGAGGGTGAGACTTA
TCTCACCCTCCTAGACCAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGTGCACGTCCCATTTACTGCCGGGCTAAAGCCCACCAGGCGCAC
CATTAAAGCTCCCATTGGAAGGGCTCTTCGACCTAGAGGGAGAAAGGGAG
GGAGGGAGGGAGAGAGGGAGGAAAAGAGGATTCACCTGCTGACCCGACAG
GTCCACGATGCGCCCGAAAAGGAGAAGTGTTTGATTCTTGCCGTGGAAAG
GAGCGAAGACTCGCTCCCGGGGAAGGCATCCCTCCTTCACTTCCTGGAGG
AAGAAGGAAAGGAGGGAGAGAGGGAGGATGGGATGACCTACATGCTGTTG
GGGTCGGGCTCGGATGCTTACAAGACTGTATGGACCAAGTCAATGCTCGT
GCAGCAGCAGCAGAAGCAGCAGAGAAGTAACAGTGATTGTCAAGCCCTCC
TCCTCGCCTTCCCTACCCCTCCCTCCCTCCGTCCCTCCCCCTCCTCCTCC
CCCACCACCGGCCATCACCATTTCAATCCTGACCATCAGCCCTGTCGTTC
TCCCTCCCTTCCTCGCCCCCTTCCTCCTGCCTCCAGGTCGGGTCGTGCGA
CCAACAGTGAGAAATGCAAACAGACAAGGTCGATCTGTCGCTCGATCCAA
TCCGGCGATGAAGGAGGGAAGAAGAAGATGAGGGCGCCTGTGGAAAGGAC
AAGCAGTTGGGCTGACGGGGCACGATTTGAGAAGTCGGTGCAGTAGGGAT
GGGAAAGGAGGGAGGGGGGAAGGAAGCGAAGGAGGAGGATGGAGGAGGAG
GAGGAGGAGGAGGAGGATGACAATGAGAGGGGAAAGATACGTCGAAAATC
GGAGAATGAGTGGAGGGAGGAAGGGAGGGAGGAAAGGAGAAGGTCACTTA
ATAGGAAACAGGATACATCGGAAGAAAGGAGAAGGAGGGGAGAAAGGGGA
GGGAGGGAGGGAGGGAGGAGGGGGACATGACCCTAAGGTGGGGGAAGGGA
GGGAAGGAAGGAGGGAGTGGGTGGAGATGATGTCGGAGGGGGATAAGTAT
TTCTTTGACTTGGGGTGCCAGCAGGGGGGTACAGTAGGCCCTCCTCCAAT
TCCATCACCAGCAGCAGCAGCAGCAGCAGCACTCACAGCAGCAGCAGCAA
AGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGAAAGAATAAAAGGAATGGTCGAAGAAGGGGGAG
GGATAAAAGGAGGTTTGTCAATAGAGCAAACAACAATGTTACTTGCTCAG
CAGCAGCAGTACCACCACCACCACCACCAGCAGCAGTTTCAACCTCAAGT
AGGAGAAGGTAGTGCGGGAGGGGTAGGAATGGCTAATCTGACCCCTGGAG
GAGGGTTTGGCCTTGAGAGTCTCTTAAAACAACATGAGCAGTCGCAGCAA
CGGCGAGAAGGAGGAGAAGAGGGAGGAAGAGGAGGAGTAGGAGGGGACAG
AGATGTGGCGCAGACGGCAGCGGCCTTCTTATCAAGCATGAAGGCTTGA
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Coding sequence (CDS) from alignment at chr28:419101..421349-

>NO28G01330.1 ID=NO28G01330.1|Name=NO28G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr28:419101..421349- (Nannochloropsis oceanica)
ATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAATTTGGCATCATC
TTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCTGTGTGGACTTGG
GGAGGCAAGCGCAGCAGCCCATCCTATCGCCCGGACACATATCTGCAGCA
GCCGAAGCAGCGGTCCACGATGCGCCCGAAAAGGAGAAGTGTTTGATTCT
TGCCGTGGAAAGGAGCGAAGACTCGCTCCCGGGGAAGGCATCCCTCCTTC
ACTTCCTGGAGGAAGAAGGAAAGGAGGGAGAGAGGGAGGATGGGATGACC
TACATGCTGTTGGGGTCGGGCTCGGATGCTTACAAGACTGTATGGACCAA
GTCAATGCTCGTGCAGCAGCAGCAGAAGCAGCAGAGAAGTAACAGTGATT
GTCAAGCCCTCCTCCTCGCCTTCCCTACCCCTCCCTCCCTCCGTCCCTCC
CCCTCCTCCTCCCCCACCACCGGCCATCACCATTTCAATCCTGACCATCA
GCCCTGTCGTTCTCCCTCCCTTCCTCGCCCCCTTCCTCCTGCCTCCAGGA
TACATCGGAAGAAAGGAGAAGGAGGGGAGAAAGGGGAGGGAGGGAGGGAG
GGAGGAGGGGGACATGACCCTAAGCAGCAGCAGCAGCAGCAGCACTCACA
GCAGCAGCAGCAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAATAAAAGGAATGGTC
GAAGAAGGGGGAGGGATAAAAGGAGGTTTGTCAATAGAGCAAACAACAAT
GTTACTTGCTCAGCAGCAGCAGTACCACCACCACCACCACCAGCAGCAGT
TTCAACCTCAAGTAGGAGAAGGTAGTGCGGGAGGGGTAGGAATGGCTAAT
CTGACCCCTGGAGGAGGGTTTGGCCTTGAGAGTCTCTTAAAACAACATGA
GCAGTCGCAGCAACGGCGAGAAGGAGGAGAAGAGGGAGGAAGAGGAGGAG
TAGGAGGGGACAGAGATGTGGCGCAGACGGCAGCGGCCTTCTTATCAAGC
ATGAAGGCTTGA
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Synonyms
Publications