NO28G01320, NO28G01320 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G01320 vs. NCBI_GenBank
Match: EWM20852.1 (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 209.9 bits (533), Expect = 1.100e-50 Identity = 102/125 (81.60%), Postives = 114/125 (91.20%), Query Frame = 0 Query: 190 IRDFSLLSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 IRDFSL+SGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRA R AP TL+ WEY+GQAK+CLKVP +L++LR L T+A L+SYQVEDAGRTQIAAGS+TVLAIGPAPV+E+D ITGHLKLL Sbjct: 91 IRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215
BLAST of NO28G01320 vs. NCBI_GenBank
Match: CBJ32052.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 159.8 bits (403), Expect = 1.300e-35 Identity = 77/126 (61.11%), Postives = 96/126 (76.19%), Query Frame = 0 Query: 189 GIRDFSLLSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 G R +SL GPFK+VL VNM+L MGKGK+ AQC HATLG Y+ + RH P+ LR WE++GQAK+C+K PT +L ++A A AGLV+Y V DAG TQIAAGSRTVLA+GPAPV + I+ HLKL+ Sbjct: 37 GARAWSLDDGPFKLVLIVNMQLKMGKGKVVAQCCHATLGNYRISERHCPSALRGWEHMGQAKICVKCPTETELYDIQAKAQSAGLVNYLVMDAGHTQIAAGSRTVLALGPAPVWAFEGISSHLKLM 162
BLAST of NO28G01320 vs. NCBI_GenBank
Match: XP_008897238.1 (peptidyl-tRNA hydrolase [Phytophthora parasitica INRA-310] >ETN17704.1 peptidyl-tRNA hydrolase [Phytophthora parasitica INRA-310] >KUF92938.1 Mitogen-activated protein kinase kinase 1 [Phytophthora nicotianae] >KUG02300.1 peptidyl-tRNA hydrolase 2 [Phytophthora nicotianae]) HSP 1 Score: 150.6 bits (379), Expect = 8.100e-33 Identity = 73/116 (62.93%), Postives = 89/116 (76.72%), Query Frame = 0 Query: 199 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 P KMV+CV +L MGKGK+AAQC HATLGAYKRA + P +R+WE +GQAKVCLKV + ++ L A GLV+Y V DAGRTQIA S+TVL+IGPAP+KE+D ITGHLKL+ Sbjct: 77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKEIDEITGHLKLM 192
BLAST of NO28G01320 vs. NCBI_GenBank
Match: OQS04825.1 (peptidyl-tRNA hydrolase [Thraustotheca clavata]) HSP 1 Score: 150.2 bits (378), Expect = 1.100e-32 Identity = 77/121 (63.64%), Postives = 89/121 (73.55%), Query Frame = 0 Query: 194 SLLSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 SL P KMVL V +L MGKGKIAAQCGHATLGAYKRA + P L WE +GQAKV LKV T AD+ +L A A GLV Y V DAGRTQIA ++TVLA+GPAP ++DN+TGHLKL+ Sbjct: 57 SLKWEPHKMVLVVRNDLKMGKGKIAAQCGHATLGAYKRAVKRTPQALECWEALGQAKVALKVETEADMLELAARAKELGLVHYVVVDAGRTQIAPDTKTVLAVGPAPNGDIDNLTGHLKLM 177
BLAST of NO28G01320 vs. NCBI_GenBank
Match: XP_009517234.1 (hypothetical protein PHYSODRAFT_344137 [Phytophthora sojae] >EGZ29959.1 hypothetical protein PHYSODRAFT_344137 [Phytophthora sojae]) HSP 1 Score: 149.1 bits (375), Expect = 2.400e-32 Identity = 72/116 (62.07%), Postives = 88/116 (75.86%), Query Frame = 0 Query: 199 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 P KMV+CV +L MGKGKIAAQC HATLGAYKRA + P +R+WE +GQAKVCLKV + ++ L A GLV+Y V DAGRTQIA S+TVL+IGPAP+K +D +TGHLKL+ Sbjct: 75 PHKMVMCVRTDLKMGKGKIAAQCCHATLGAYKRAVKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAERAAEHGLVNYVVVDAGRTQIAPDSKTVLSIGPAPLKAIDEVTGHLKLM 190
BLAST of NO28G01320 vs. NCBI_GenBank
Match: POM67434.1 (Peptidyl-tRNA hydrolase [Phytophthora palmivora var. palmivora]) HSP 1 Score: 149.1 bits (375), Expect = 2.400e-32 Identity = 74/116 (63.79%), Postives = 87/116 (75.00%), Query Frame = 0 Query: 199 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 P KMVLCV +L MGKGKIAAQC HATLGAYKRA + P +R+WE +GQAKVCLKV + ++ L A GLV+Y V DAGRTQIA S+TVL IGPAP+K +D ITGHLKL+ Sbjct: 70 PHKMVLCVRTDLKMGKGKIAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLLLAEKAAERGLVNYVVVDAGRTQIAPESKTVLGIGPAPLKAIDEITGHLKLM 185
BLAST of NO28G01320 vs. NCBI_GenBank
Match: GAX96580.1 (peptidyl-tRNA hydrolase, putative [Pythium insidiosum]) HSP 1 Score: 148.7 bits (374), Expect = 3.100e-32 Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = 0 Query: 199 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 P KMVLCV +L MGKGKIAAQC HATLGAYKRA + P +++WE +GQAKVCLKV + ++ L AT GL++Y V DAGRTQIA S+TVL IGPAP+ ++ +TGHLKL+ Sbjct: 85 PHKMVLCVRTDLKMGKGKIAAQCCHATLGAYKRAVKRTPNAVKAWEMLGQAKVCLKVDSEEEMMSLAEAATACGLINYVVVDAGRTQIAPDSKTVLGIGPAPIDAINEVTGHLKLM 200
BLAST of NO28G01320 vs. NCBI_GenBank
Match: EJK65910.1 (hypothetical protein THAOC_13191 [Thalassiosira oceanica]) HSP 1 Score: 148.3 bits (373), Expect = 4.000e-32 Identity = 70/122 (57.38%), Postives = 88/122 (72.13%), Query Frame = 0 Query: 193 FSLLSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 + + P+KMVLCVN LSMGKGKIAAQCGHA +G YKRA RH L +WE G AK+ +K P+ ++ ++ A A G+ Y VEDAGRTQIAAGSRTVL +GPAPV+E D ++ HLKL+ Sbjct: 65 WGISDAPYKMVLCVNTSLSMGKGKIAAQCGHAAVGCYKRAKRHCQAGLSAWERTGCAKIAVKCPSEDEMDEIAAKALSRGIPIYLVEDAGRTQIAAGSRTVLGLGPAPVREFDGVSNHLKLM 186
BLAST of NO28G01320 vs. NCBI_GenBank
Match: ETI34089.1 (peptidyl-tRNA hydrolase [Phytophthora parasitica P1569] >ETK74435.1 peptidyl-tRNA hydrolase [Phytophthora parasitica] >ETL27856.1 peptidyl-tRNA hydrolase [Phytophthora parasitica] >ETM34297.1 peptidyl-tRNA hydrolase [Phytophthora parasitica]) HSP 1 Score: 148.3 bits (373), Expect = 4.000e-32 Identity = 72/116 (62.07%), Postives = 88/116 (75.86%), Query Frame = 0 Query: 199 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 P KMV+CV +L MGKGK+AAQC HATLGAYKRA + P +R+WE +GQAKVCLKV + ++ L A GLV+Y V DAGRTQIA S+TVL+IGPAP+K +D ITGHLKL+ Sbjct: 77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKAIDEITGHLKLM 192
BLAST of NO28G01320 vs. NCBI_GenBank
Match: ETL81108.1 (peptidyl-tRNA hydrolase [Phytophthora parasitica] >ETO62894.1 peptidyl-tRNA hydrolase [Phytophthora parasitica P1976] >ETP03959.1 peptidyl-tRNA hydrolase [Phytophthora parasitica CJ01A1] >ETP32114.1 peptidyl-tRNA hydrolase [Phytophthora parasitica P10297]) HSP 1 Score: 148.3 bits (373), Expect = 4.000e-32 Identity = 72/116 (62.07%), Postives = 88/116 (75.86%), Query Frame = 0 Query: 199 PFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315 P KMV+CV +L MGKGK+AAQC HATLGAYKRA + P +R+WE +GQAKVCLKV + ++ L A GLV+Y V DAGRTQIA S+TVL+IGPAP+K +D ITGHLKL+ Sbjct: 77 PHKMVMCVRTDLKMGKGKVAAQCCHATLGAYKRALKRTPDAVRAWEMLGQAKVCLKVDSEEEMLALAEKAAEHGLVNYVVVDAGRTQIAPESKTVLSIGPAPLKAIDEITGHLKLM 192 The following BLAST results are available for this feature:
BLAST of NO28G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G01320 ID=NO28G01320|Name=NO28G01320|organism=Nannochloropsis oceanica|type=gene|length=3064bpback to top protein sequence of NO28G01320.1 >NO28G01320.1-protein ID=NO28G01320.1-protein|Name=NO28G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bpback to top Synonyms
Publications
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