NO28G01320.1, NO28G01320.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G01320.1
Unique Name	NO28G01320.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1826
Alignment location	chr28:415932..418995 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:415932..418995 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO28G01320.1 vs.
Match: EWM20852.1 (peptidyl-trna hydrolase pth2 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 211.1 bits (536), Expect = 5.100e-51
Identity = 116/171 (67.84%), Postives = 136/171 (79.53%), Query Frame = 0

Query:  144 RRRRRLQPLEERKEQEVGDGEDDDEQESGSESESDEDSETAAASGGIRDFSLLSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELDNITGHLKLL 315
            RR+R  Q   E  E+E  +G D +     S++E   D  T+A +  IRDFSL+SGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRA R AP TL+ WEY+GQAK+CLKVP   +L++LR L T+A L+SYQVEDAGRTQIAAGS+TVLAIGPAPV+E+D ITGHLKLL
Sbjct:   51 RRKRGRQWPSEALEEEADEGSDSER----SDTEESADGITSAKT--IRDFSLVSGPFKMVLCVNMELSMGKGKIAAQCGHATLGAYKRARRLAPRTLQGWEYMGQAKICLKVPDQVELERLRVLVTKAQLISYQVEDAGRTQIAAGSQTVLAIGPAPVQEIDRITGHLKLL 215

The following BLAST results are available for this feature:

BLAST of NO28G01320.1 vs.

BLAST of NO28G01320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20852.1	5.100e-51	67.84	peptidyl-trna hydrolase pth2 domain-containing pro...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G01320	NO28G01320	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01320.1	NO28G01320.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01320.1.cds1	NO28G01320.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01320.1.cds2	NO28G01320.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01320.1.cds3	NO28G01320.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:415932..418995-
coding sequence from alignment at chr28:415932..418995-

mRNA sequence

>NO28G01320.1 ID=NO28G01320.1|Name=NO28G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp
ATGGGTGGGATGACATACCTTCGGAGGGGGAGCAGCAGCAGCAGCAGCAG
CAGCAGTTTTTCTGTCAAAGAATGCAAATGTAGCATTTGGAGAAGCTACA
ACTACTGCTGTCATTGGTGGATAATGGACGGCAAGCCTAGCTTGCATATC
GCAAAAGCTCACGACCGGAAATCCCCTCATCCAACAAAATTGCCTTACAG
TACAGCAGCAGCAGCAACAGTAGCAGCAGCAGCAGCGGTAGCCGCAGCAG
TAGCAGCAGTAGCAGCAGTAGCAGCAGGAGGCAATCATCATGGCATTCGC
TGCGTACTCATCCGTTCTTGCGGCCGTTTTAGAGGCCGCGATTGCAACGC
CCGGGCGGGCTCTCCTTCTTTCCTTCGCCGCGGGCATGTTGGTAACGGGG
TGTGTGCTGCCCATGGGGGGGGGAGGAGGCGGCGCCGACGCCGTCTACAA
CCCTTGGAGGAACGAAAGGAACAGGAGGTAGGGGACGGGGAGGACGACGA
CGAGCAAGAAAGCGGGAGTGAGAGCGAAAGCGACGAAGACAGTGAAACCG
CAGCGGCCAGCGGGGGCATTCGTGACTTCTCCCTTCTGTCTGGTCCCTTC
AAGATGGTGCTCTGTGTCAACATGGAACTGTCGATGGGAAAAGGCAAGAT
TGCTGCACAATGCGGTCACGCCACCCTAGGTGCTTACAAACGTGCAGCGC
GGCATGCCCCCACTACATTGCGAAGTTGGGAGTATGTTGGGCAAGCCAAG
GTGTGTCTTAAAGTCCCGACGGGAGCAGACCTGCAACAGCTCCGCGCCTT
GGCCACACGGGCGGGGTTGGTTTCCTACCAGGTGGAAGATGCCGGACGCA
CGCAGATAGCTGCAGGATCACGGACTGTCTTAGCGATCGGTCCCGCGCCA
GTGAAAGAGCTGGATAACATCACGGGACACTTGAAACTACTCTGACAGCG
CACACAATGAGCGAATCCTAGTACCATAAAGTATATACGAACGTATTGAA
GCATGCCACATGACACTTAAGCGTTGAAGGAACAGAATGTCGTTTCGTTC
TTATGCTTGGTTTGCCCGTTCCATTTTTGGTTTTCTCTTCGTTTATCGTT
TTTCTTCAAATCTGTCCTCTATTTTTCACAAAATCTGTGGCATTGTCTTT
ATGCAATCATCCGTGTTTCACGGTTCGTCGTGCATATCCCCCCATCCCCC
TTTCCTTGTCCGCTAGGACCATAGGGGACCAGATATTTACATCCTCTTCT
TGTTTCCTCTTATTGTTTCCTCTTATTGTTCGGACACTCTTTCCGACCGC
GGGTGGAGGAGGGGAGGAAGGGAAGAAAAGAGGGGGAGGGAAGGAGAATG
TGCCTCGCCCCTCCTGTGTCTTCTACCAATGGAACACCTCCTCGTGCATT
GCTATCCTCTCTTTTGCTTCTTGCAACTCCATCACTGCGTTGCGAGCCTC
CACAAGCATGGCATCCGGGCCACATACCACCACCCCTTTCTCCCCCCCGT
CCTCCTTCCCTCCTTCCCGCGATTCACTCCATTTTTTGACCATCGTTCTC
ACTTCCGGTCGCCCACAGTCGTAGACTAATCCTCCTTCCGTCACGCCTCC
TCGCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCGCCCGTCACATACAGCC
GAAGGGTGAATGAGAAGGAAGGAGGGAGGGAGGGCGAGAATTTCGCCCGC
ACAGATGTCGCGGCAGCATCAGCAGCAACAGCAGCAACAGCAGAGCGCAA
CGGCATGCCATTCTTACTCTCTTCCCCGTTCTCGTCCTCATCCTTCCACT
CTCCGCCCCCCTCCCCCCTCCCTCCC

protein sequence of NO28G01320.1

>NO28G01320.1-protein ID=NO28G01320.1-protein|Name=NO28G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MGGMTYLRRGSSSSSSSSSFSVKECKCSIWRSYNYCCHWWIMDGKPSLHI
AKAHDRKSPHPTKLPYSTAAAATVAAAAAVAAAVAAVAAVAAGGNHHGIR
CVLIRSCGRFRGRDCNARAGSPSFLRRGHVGNGVCAAHGGGRRRRRRRLQ
PLEERKEQEVGDGEDDDEQESGSESESDEDSETAAASGGIRDFSLLSGPF
KMVLCVNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAK
VCLKVPTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAP
VKELDNITGHLKLL*

mRNA from alignment at chr28:415932..418995-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G01320.1 ID=NO28G01320.1|Name=NO28G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=3064bp|location=Sequence derived from alignment at chr28:415932..418995- (Nannochloropsis oceanica)
ATGGGTGGGATGACATACCTTCGGAGGGGGAGCAGCAGCAGCAGCAGCAG
CAGCAGTTTTTCTGTCAAAGAATGCAAATGTAGCATTTGGAGAAGCTACA
ACTACTGCTGTCATTGGTGGATAAGTGAGTCTTCACATAACGTCGAAGAA
GGAAAGTGGTGAAAGGCTTTTGGAATGATGCAAGAAGTGAGGACAAAAAC
ATGATCTCGAAGCAATCACAAGCGTGGAGTAAAATAGCAATGAAGAAATA
CGCACTGTGGCAGGAGATGGGAGGTAATTGCCTTCGAATGGCGTATTTTA
TGCTCTGCTTGGTCTCGTATGTCGGCATGTATGTATGGTACATACGTAAG
CGGATGCGCGACAGTGTTGCACAGCAACATAGCCCCCGTTCCCAAAATCC
AGGGATTGTTTAAAACAATATTACCAGCCTCTAGCTCTCTGTAGGCAAAT
GGGGAGGCCTTCTAAAACCCCGCAAAAGGCCCGTAGGGACGTACAGGGGG
AGGTTTTTTTATCGAAAGATGAGACGCATTCCCCGTTCCCCCCAATTCGT
AACTGTTTGGTCTGCAAATGATGTCGATGGCCATACGTGTAGCCATTATA
ATTCAATCAATTAATTAAATACGTAGATGCCCTATAGGCTTGACCGTATA
GGCTTGACCATGGTCAGTGTCATCGACTCTGAGATCCCTAACCCCCCAAA
AAAATTGACGAGTACATGACCACAAATACATAAAGAACAATTTCGGAGGC
TTTTTTGCTGCAAAAAGTGCCCGTAGGACTCGGTTGGGCTTGGTACAGGT
GCATATGGGTGTGCGTCAGGTGCCTTTTGCTTTTTACAGGGTTTGCTCTG
CTTCTCAAACCCCTCAAAAAGCATCGAACACACATCGACAAACCCCTGAA
AAAGCAAGCGAGGGTTTTTTGCTTTTTGAGGGGTTGGATGGCGAACACAC
CCACTACTCAACTGAAGCGCAACGGACACGGACGCGCAAACTTTGAAACT
TCTTACTACCTCCTCTTGAGCAGTGGACGGCAAGCCTAGCTTGCATATCG
CAAAAGCTCACGACCGGAAATCCCCTCATCCAACAAAATTGCCTTACAGT
ACAGCAGCAGCAGCAACAGTAGCAGCAGCAGCAGCGGTAGCCGCAGCAGT
AGCAGCAGTAGCAGCAGTAGCAGCAGGAGGCAATCATCATGGCATTCGCT
GCGTACTCATCCGTTCTTGCGGCCGTTTTAGAGGCCGCGATTGCAACGCC
CGGGCGGGCTCTCCTTCTTTCCTTCGCCGCGGGCATGTTGGTAACGGGGT
GTGTGCTGCCCATGGGGGGGGGAGGAGGCGGCGCCGACGCCGTCTACAAC
CCTTGGAGGAACGAAAGGAACAGGAGGTAGGGGACGGGGAGGACGACGAC
GAGCAAGAAAGCGGGAGTGAGAGCGAAAGCGACGAAGACAGTGAAACCGC
AGCGGCCAGCGGGGGCATTCGTGACTTCTCCCTTCTGTCTGGTCCCTTCA
AGATGGTGCTCTGTGTCAACATGGAACTGTCGATGGGAAAAGGCAAGATT
GCTGCACAATGCGGTCACGCCACCCTAGGTGCTTACAAACGTGCAGCGCG
GCATGCCCCCACTACATTGCGAAGTTGGGAGTATGTTGGGTGAGTGTGGG
ATGGAGGAAGGGAAGGCAAGATGAAGAGAGGGCAGGGATTGTACGGATGC
GCGAAAGCCTGCTTGCAAGATGCTACGTGTGGTGTGGTAGCACAGGGCTT
TATCCGCCGTATTAAAAAGAAGTCATGGTATCGGATCGAATGCACTAATT
TCAAAATATAGGTCAGGCTTCCCTCCAGTGTGTGGACGTCGATGACCGTT
CGTGTTCGCTGTGCGACTGCAAAAGCATGGCGCCCTGACCTGTCGGAGAA
CATATGTCCATGTGTGGATGTATTTGTGTAATGATCCTTCAATGCATCAT
ATTGTCCTTCCTCTTTTCCTTCCCTCAGGCAAGCCAAGGTGTGTCTTAAA
GTCCCGACGGGAGCAGACCTGCAACAGCTCCGCGCCTTGGCCACACGGGC
GGGGTTGGTTTCCTACCAGGTGGAAGATGCCGGACGCACGCAGATAGCTG
CAGGATCACGGACTGTCTTAGCGATCGGTCCCGCGCCAGTGAAAGAGCTG
GATAACATCACGGGACACTTGAAACTACTCTGACAGCGCACACAATGAGC
GAATCCTAGTACCATAAAGTATATACGAACGTATTGAAGCATGCCACATG
ACACTTAAGCGTTGAAGGAACAGAATGTCGTTTCGTTCTTATGCTTGGTT
TGCCCGTTCCATTTTTGGTTTTCTCTTCGTTTATCGTTTTTCTTCAAATC
TGTCCTCTATTTTTCACAAAATCTGTGGCATTGTCTTTATGCAATCATCC
GTGTTTCACGGTTCGTCGTGCATATCCCCCCATCCCCCTTTCCTTGTCCG
CTAGGACCATAGGGGACCAGATATTTACATCCTCTTCTTGTTTCCTCTTA
TTGTTTCCTCTTATTGTTCGGACACTCTTTCCGACCGCGGGTGGAGGAGG
GGAGGAAGGGAAGAAAAGAGGGGGAGGGAAGGAGAATGTGCCTCGCCCCT
CCTGTGTCTTCTACCAATGGAACACCTCCTCGTGCATTGCTATCCTCTCT
TTTGCTTCTTGCAACTCCATCACTGCGTTGCGAGCCTCCACAAGCATGGC
ATCCGGGCCACATACCACCACCCCTTTCTCCCCCCCGTCCTCCTTCCCTC
CTTCCCGCGATTCACTCCATTTTTTGACCATCGTTCTCACTTCCGGTCGC
CCACAGTCGTAGACTAATCCTCCTTCCGTCACGCCTCCTCGCCTTCCTTC
CTCCCTCCCTCCCTCCCTCCCGCCCGTCACATACAGCCGAAGGGTGAATG
AGAAGGAAGGAGGGAGGGAGGGCGAGAATTTCGCCCGCACAGATGTCGCG
GCAGCATCAGCAGCAACAGCAGCAACAGCAGAGCGCAACGGCATGCCATT
CTTACTCTCTTCCCCGTTCTCGTCCTCATCCTTCCACTCTCCGCCCCCCT
CCCCCCTCCCTCCC

Coding sequence (CDS) from alignment at chr28:415932..418995-

>NO28G01320.1 ID=NO28G01320.1|Name=NO28G01320.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr28:415932..418995- (Nannochloropsis oceanica)
ATGGGTGGGATGACATACCTTCGGAGGGGGAGCAGCAGCAGCAGCAGCAG
CAGCAGTTTTTCTGTCAAAGAATGCAAATGTAGCATTTGGAGAAGCTACA
ACTACTGCTGTCATTGGTGGATAATGGACGGCAAGCCTAGCTTGCATATC
GCAAAAGCTCACGACCGGAAATCCCCTCATCCAACAAAATTGCCTTACAG
TACAGCAGCAGCAGCAACAGTAGCAGCAGCAGCAGCGGTAGCCGCAGCAG
TAGCAGCAGTAGCAGCAGTAGCAGCAGGAGGCAATCATCATGGCATTCGC
TGCGTACTCATCCGTTCTTGCGGCCGTTTTAGAGGCCGCGATTGCAACGC
CCGGGCGGGCTCTCCTTCTTTCCTTCGCCGCGGGCATGTTGGTAACGGGG
TGTGTGCTGCCCATGGGGGGGGGAGGAGGCGGCGCCGACGCCGTCTACAA
CCCTTGGAGGAACGAAAGGAACAGGAGGTAGGGGACGGGGAGGACGACGA
CGAGCAAGAAAGCGGGAGTGAGAGCGAAAGCGACGAAGACAGTGAAACCG
CAGCGGCCAGCGGGGGCATTCGTGACTTCTCCCTTCTGTCTGGTCCCTTC
AAGATGGTGCTCTGTGTCAACATGGAACTGTCGATGGGAAAAGGCAAGAT
TGCTGCACAATGCGGTCACGCCACCCTAGGTGCTTACAAACGTGCAGCGC
GGCATGCCCCCACTACATTGCGAAGTTGGGAGTATGTTGGGCAAGCCAAG
GTGTGTCTTAAAGTCCCGACGGGAGCAGACCTGCAACAGCTCCGCGCCTT
GGCCACACGGGCGGGGTTGGTTTCCTACCAGGTGGAAGATGCCGGACGCA
CGCAGATAGCTGCAGGATCACGGACTGTCTTAGCGATCGGTCCCGCGCCA
GTGAAAGAGCTGGATAACATCACGGGACACTTGAAACTACTCTGA

Synonyms

Publications