NO28G01300, NO28G01300 (gene) Nannochloropsis oceanica

Overview
NameNO28G01300
Unique NameNO28G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1589
Alignment locationchr28:407805..409393 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:407805..409393 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01300.1NO28G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100514g2gene9565Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01300.1NO28G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01300 ID=NO28G01300|Name=NO28G01300|organism=Nannochloropsis oceanica|type=gene|length=1589bp
GTTTTTCTCAAACGTCTTCTTGGAGTGAATGTGGAACAATGAATGGAAAG
ATTATTGTAATCCGTGATTATAATAAGAAAAATAGAGAAACAATGGTAAA
TCAATTATGTCTTGACAGGCTCCCCTTCATACTAACGATTGTCTTGCCGT
CTCCAGACTGTCGTTCGTTTCACCTCCCCTCTCACCCAACCCTCCAAAAT
CGAAAAACTGATCCTCACGCGGCATTTTATCGGGCATTCCAACAAATTTG
CCTGGCTTCTCATAAATTGTCTCTTACTTTATCCAGGAATGGCCACCTCC
TTTCCCTCAGCATTTTACTTGGCCAGgtaaggaaaaaattgacatgggcc
cacttccacaacctctggcttatcctcacaacgcacagTGATCCGAGCAA
CACCACATGGCAGGGTCAGCAAATGCTGGTCAGACATTTGGCAGCTCTGA
CCATTCAATCTGTGGTGCGTGGCGGGCTGGTGCGCAGGAGGTCTGCGGCA
GCGGCGGAGGCGGCACGACGCCAGAAGGCTAAGGAAAAGGTTGCTTCTTC
ATCCAAAGCCAACAACAAGAAGGAAATTGGCAACAGACTGTGCAATGTTC
CGATCAGAAGAGCCTGCTACTCTACAAATAGAAGCAGCAGTAGTAGCGGC
AGCGTTAGCACTTGCAATACTAATAGCAGCACCTGCAATGGAGAAGAGCA
CGACGCATGGCACGTTTCAGCCGCCCGCACGTCTCCGTCCCTTCATGCAC
CATCCACCAAGCCTGCCAGCCCCATCATCATCACTTTTCCTGATTCTTTC
CCTCCTCCTGTACGTAGCTCCATTCCTAATTTTTCACAATTGGTGCAAGA
TCTGCCTGCGTCGTCACCGTGCTTTTCGTCCTTCCCTCCCCTCTCTCCCC
TTCCTCGCCGACGCCCCTTGTCCGCCTGTGCGTGCATTTGGGCGGCAGCA
GGAGCAGACAAGGCGAAAGGAAAAAGAAATGAACAAGATGGTCAGAAATC
TGGAAGAATAAGCGAAGCAGTGGGGGAAGGAAAGAAAAAAGGTGAGGAGG
AACGCGATTGGAAAGAGGGAGGAAGAGGAGGGGGAGGAGAGGATGAGGAT
CAAGTAGAAGGACGAAAGAGGGCAGCACCGGCAAGAACAGCAGCCGCAGC
AGCTGCACAGAGAAGGACAGCAGAGTATCGTCCCCTCCCTCCTCCCTTTT
CTTTTCAGGCCCATCGTCCTGCCACTGCCAAGCCGCTCGGGAATAAAGCC
CCGATTGCCTCTCGGCCCCGGACCCACTTTGGCAACCGCGGTAGTAGCAG
AGGCAGCAGTCGGAAAATCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCAG
CGGCAGCAGCAGCAGTGTCGTGGCCTTGGCTATCAGCACGACCAACAGTG
TCACGTACTACAAGCCACGCAAGCCCTATCCGTAGCAGCAGCAGCAGCAG
CTACAGCAGCCACGCCCAGATACAAGCTCCACCGCAGAGATTCTCAGCGA
GGTCAGTGACGTCGAGGCGAGAGCGGCTGTGGCGAAGGCTCCTCCAGGAA
AGTGCTATGGAGGAGAAAGGAGAGACCGGGAAATTATGA
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protein sequence of NO28G01300.1

>NO28G01300.1-protein ID=NO28G01300.1-protein|Name=NO28G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MATSFPSAFYLASDPSNTTWQGQQMLVRHLAALTIQSVVRGGLVRRRSAA
AAEAARRQKAKEKVASSSKANNKKEIGNRLCNVPIRRACYSTNRSSSSSG
SVSTCNTNSSTCNGEEHDAWHVSAARTSPSLHAPSTKPASPIIITFPDSF
PPPVRSSIPNFSQLVQDLPASSPCFSSFPPLSPLPRRRPLSACACIWAAA
GADKAKGKRNEQDGQKSGRISEAVGEGKKKGEEERDWKEGGRGGGGEDED
QVEGRKRAAPARTAAAAAAQRRTAEYRPLPPPFSFQAHRPATAKPLGNKA
PIASRPRTHFGNRGSSRGSSRKISSSSSSSSSSAAAAAVSWPWLSARPTV
SRTTSHASPIRSSSSSSYSSHAQIQAPPQRFSARSVTSRRERLWRRLLQE
SAMEEKGETGKL*
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Synonyms
Publications