NO28G01300.1, NO28G01300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01300.1
Unique NameNO28G01300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1527
Alignment locationchr28:407805..409393 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:407805..409393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01300NO28G01300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01300.1NO28G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01300.1.cds1NO28G01300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01300.1.cds2NO28G01300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01300.1 ID=NO28G01300.1|Name=NO28G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp
GTTTTTCTCAAACGTCTTCTTGGAGTGAATGTGGAACAATGAATGGAAAG
ATTATTGTAATCCGTGATTATAATAAGAAAAATAGAGAAACAATGGTAAA
TCAATTATGTCTTGACAGGCTCCCCTTCATACTAACGATTGTCTTGCCGT
CTCCAGACTGTCGTTCGTTTCACCTCCCCTCTCACCCAACCCTCCAAAAT
CGAAAAACTGATCCTCACGCGGCATTTTATCGGGCATTCCAACAAATTTG
CCTGGCTTCTCATAAATTGTCTCTTACTTTATCCAGGAATGGCCACCTCC
TTTCCCTCAGCATTTTACTTGGCCAGTGATCCGAGCAACACCACATGGCA
GGGTCAGCAAATGCTGGTCAGACATTTGGCAGCTCTGACCATTCAATCTG
TGGTGCGTGGCGGGCTGGTGCGCAGGAGGTCTGCGGCAGCGGCGGAGGCG
GCACGACGCCAGAAGGCTAAGGAAAAGGTTGCTTCTTCATCCAAAGCCAA
CAACAAGAAGGAAATTGGCAACAGACTGTGCAATGTTCCGATCAGAAGAG
CCTGCTACTCTACAAATAGAAGCAGCAGTAGTAGCGGCAGCGTTAGCACT
TGCAATACTAATAGCAGCACCTGCAATGGAGAAGAGCACGACGCATGGCA
CGTTTCAGCCGCCCGCACGTCTCCGTCCCTTCATGCACCATCCACCAAGC
CTGCCAGCCCCATCATCATCACTTTTCCTGATTCTTTCCCTCCTCCTGTA
CGTAGCTCCATTCCTAATTTTTCACAATTGGTGCAAGATCTGCCTGCGTC
GTCACCGTGCTTTTCGTCCTTCCCTCCCCTCTCTCCCCTTCCTCGCCGAC
GCCCCTTGTCCGCCTGTGCGTGCATTTGGGCGGCAGCAGGAGCAGACAAG
GCGAAAGGAAAAAGAAATGAACAAGATGGTCAGAAATCTGGAAGAATAAG
CGAAGCAGTGGGGGAAGGAAAGAAAAAAGGTGAGGAGGAACGCGATTGGA
AAGAGGGAGGAAGAGGAGGGGGAGGAGAGGATGAGGATCAAGTAGAAGGA
CGAAAGAGGGCAGCACCGGCAAGAACAGCAGCCGCAGCAGCTGCACAGAG
AAGGACAGCAGAGTATCGTCCCCTCCCTCCTCCCTTTTCTTTTCAGGCCC
ATCGTCCTGCCACTGCCAAGCCGCTCGGGAATAAAGCCCCGATTGCCTCT
CGGCCCCGGACCCACTTTGGCAACCGCGGTAGTAGCAGAGGCAGCAGTCG
GAAAATCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCAGCGGCAGCAGCAG
CAGTGTCGTGGCCTTGGCTATCAGCACGACCAACAGTGTCACGTACTACA
AGCCACGCAAGCCCTATCCGTAGCAGCAGCAGCAGCAGCTACAGCAGCCA
CGCCCAGATACAAGCTCCACCGCAGAGATTCTCAGCGAGGTCAGTGACGT
CGAGGCGAGAGCGGCTGTGGCGAAGGCTCCTCCAGGAAAGTGCTATGGAG
GAGAAAGGAGAGACCGGGAAATTATGA
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protein sequence of NO28G01300.1

>NO28G01300.1-protein ID=NO28G01300.1-protein|Name=NO28G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MATSFPSAFYLASDPSNTTWQGQQMLVRHLAALTIQSVVRGGLVRRRSAA
AAEAARRQKAKEKVASSSKANNKKEIGNRLCNVPIRRACYSTNRSSSSSG
SVSTCNTNSSTCNGEEHDAWHVSAARTSPSLHAPSTKPASPIIITFPDSF
PPPVRSSIPNFSQLVQDLPASSPCFSSFPPLSPLPRRRPLSACACIWAAA
GADKAKGKRNEQDGQKSGRISEAVGEGKKKGEEERDWKEGGRGGGGEDED
QVEGRKRAAPARTAAAAAAQRRTAEYRPLPPPFSFQAHRPATAKPLGNKA
PIASRPRTHFGNRGSSRGSSRKISSSSSSSSSSAAAAAVSWPWLSARPTV
SRTTSHASPIRSSSSSSYSSHAQIQAPPQRFSARSVTSRRERLWRRLLQE
SAMEEKGETGKL*
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mRNA from alignment at chr28:407805..409393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01300.1 ID=NO28G01300.1|Name=NO28G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp|location=Sequence derived from alignment at chr28:407805..409393- (Nannochloropsis oceanica)
GTTTTTCTCAAACGTCTTCTTGGAGTGAATGTGGAACAATGAATGGAAAG
ATTATTGTAATCCGTGATTATAATAAGAAAAATAGAGAAACAATGGTAAA
TCAATTATGTCTTGACAGGCTCCCCTTCATACTAACGATTGTCTTGCCGT
CTCCAGACTGTCGTTCGTTTCACCTCCCCTCTCACCCAACCCTCCAAAAT
CGAAAAACTGATCCTCACGCGGCATTTTATCGGGCATTCCAACAAATTTG
CCTGGCTTCTCATAAATTGTCTCTTACTTTATCCAGGAATGGCCACCTCC
TTTCCCTCAGCATTTTACTTGGCCAGGTAAGGAAAAAATTGACATGGGCC
CACTTCCACAACCTCTGGCTTATCCTCACAACGCACAGTGATCCGAGCAA
CACCACATGGCAGGGTCAGCAAATGCTGGTCAGACATTTGGCAGCTCTGA
CCATTCAATCTGTGGTGCGTGGCGGGCTGGTGCGCAGGAGGTCTGCGGCA
GCGGCGGAGGCGGCACGACGCCAGAAGGCTAAGGAAAAGGTTGCTTCTTC
ATCCAAAGCCAACAACAAGAAGGAAATTGGCAACAGACTGTGCAATGTTC
CGATCAGAAGAGCCTGCTACTCTACAAATAGAAGCAGCAGTAGTAGCGGC
AGCGTTAGCACTTGCAATACTAATAGCAGCACCTGCAATGGAGAAGAGCA
CGACGCATGGCACGTTTCAGCCGCCCGCACGTCTCCGTCCCTTCATGCAC
CATCCACCAAGCCTGCCAGCCCCATCATCATCACTTTTCCTGATTCTTTC
CCTCCTCCTGTACGTAGCTCCATTCCTAATTTTTCACAATTGGTGCAAGA
TCTGCCTGCGTCGTCACCGTGCTTTTCGTCCTTCCCTCCCCTCTCTCCCC
TTCCTCGCCGACGCCCCTTGTCCGCCTGTGCGTGCATTTGGGCGGCAGCA
GGAGCAGACAAGGCGAAAGGAAAAAGAAATGAACAAGATGGTCAGAAATC
TGGAAGAATAAGCGAAGCAGTGGGGGAAGGAAAGAAAAAAGGTGAGGAGG
AACGCGATTGGAAAGAGGGAGGAAGAGGAGGGGGAGGAGAGGATGAGGAT
CAAGTAGAAGGACGAAAGAGGGCAGCACCGGCAAGAACAGCAGCCGCAGC
AGCTGCACAGAGAAGGACAGCAGAGTATCGTCCCCTCCCTCCTCCCTTTT
CTTTTCAGGCCCATCGTCCTGCCACTGCCAAGCCGCTCGGGAATAAAGCC
CCGATTGCCTCTCGGCCCCGGACCCACTTTGGCAACCGCGGTAGTAGCAG
AGGCAGCAGTCGGAAAATCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCAG
CGGCAGCAGCAGCAGTGTCGTGGCCTTGGCTATCAGCACGACCAACAGTG
TCACGTACTACAAGCCACGCAAGCCCTATCCGTAGCAGCAGCAGCAGCAG
CTACAGCAGCCACGCCCAGATACAAGCTCCACCGCAGAGATTCTCAGCGA
GGTCAGTGACGTCGAGGCGAGAGCGGCTGTGGCGAAGGCTCCTCCAGGAA
AGTGCTATGGAGGAGAAAGGAGAGACCGGGAAATTATGA
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Coding sequence (CDS) from alignment at chr28:407805..409393-

>NO28G01300.1 ID=NO28G01300.1|Name=NO28G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr28:407805..409393- (Nannochloropsis oceanica)
ATGGCCACCTCCTTTCCCTCAGCATTTTACTTGGCCAGTGATCCGAGCAA
CACCACATGGCAGGGTCAGCAAATGCTGGTCAGACATTTGGCAGCTCTGA
CCATTCAATCTGTGGTGCGTGGCGGGCTGGTGCGCAGGAGGTCTGCGGCA
GCGGCGGAGGCGGCACGACGCCAGAAGGCTAAGGAAAAGGTTGCTTCTTC
ATCCAAAGCCAACAACAAGAAGGAAATTGGCAACAGACTGTGCAATGTTC
CGATCAGAAGAGCCTGCTACTCTACAAATAGAAGCAGCAGTAGTAGCGGC
AGCGTTAGCACTTGCAATACTAATAGCAGCACCTGCAATGGAGAAGAGCA
CGACGCATGGCACGTTTCAGCCGCCCGCACGTCTCCGTCCCTTCATGCAC
CATCCACCAAGCCTGCCAGCCCCATCATCATCACTTTTCCTGATTCTTTC
CCTCCTCCTGTACGTAGCTCCATTCCTAATTTTTCACAATTGGTGCAAGA
TCTGCCTGCGTCGTCACCGTGCTTTTCGTCCTTCCCTCCCCTCTCTCCCC
TTCCTCGCCGACGCCCCTTGTCCGCCTGTGCGTGCATTTGGGCGGCAGCA
GGAGCAGACAAGGCGAAAGGAAAAAGAAATGAACAAGATGGTCAGAAATC
TGGAAGAATAAGCGAAGCAGTGGGGGAAGGAAAGAAAAAAGGTGAGGAGG
AACGCGATTGGAAAGAGGGAGGAAGAGGAGGGGGAGGAGAGGATGAGGAT
CAAGTAGAAGGACGAAAGAGGGCAGCACCGGCAAGAACAGCAGCCGCAGC
AGCTGCACAGAGAAGGACAGCAGAGTATCGTCCCCTCCCTCCTCCCTTTT
CTTTTCAGGCCCATCGTCCTGCCACTGCCAAGCCGCTCGGGAATAAAGCC
CCGATTGCCTCTCGGCCCCGGACCCACTTTGGCAACCGCGGTAGTAGCAG
AGGCAGCAGTCGGAAAATCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCAG
CGGCAGCAGCAGCAGTGTCGTGGCCTTGGCTATCAGCACGACCAACAGTG
TCACGTACTACAAGCCACGCAAGCCCTATCCGTAGCAGCAGCAGCAGCAG
CTACAGCAGCCACGCCCAGATACAAGCTCCACCGCAGAGATTCTCAGCGA
GGTCAGTGACGTCGAGGCGAGAGCGGCTGTGGCGAAGGCTCCTCCAGGAA
AGTGCTATGGAGGAGAAAGGAGAGACCGGGAAATTATGA
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Synonyms
Publications