NO28G01140, NO28G01140 (gene) Nannochloropsis oceanica

Overview
NameNO28G01140
Unique NameNO28G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3420
Alignment locationchr28:352486..355905 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:352486..355905 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01140.1NO28G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313981gene_9843Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01140.1NO28G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01140 ID=NO28G01140|Name=NO28G01140|organism=Nannochloropsis oceanica|type=gene|length=3420bp
ATGAGTTTTCAGTTTTCTGACTTGTGGATCCATACTTTCTTCCCACTTAT
CGCCCTCCTCTTTGACTACAACAGCTTCGAGCTCTTCAACTGCCATCTCT
TGTTCCTCCCCTCCCTCCTCCCCTCCCTTCCCCTTCCGAAACGTGTAAAA
TTGCAGTTCCAACAATACACTGGCCAAGGCAAAGACTGCCCATTGCAACA
ACAGGGGCAAGGTCTCGCCTAAGTACAATAAATAGGGGATTATCAAGACC
GCGGAGGCATGCCATAAGAGGACGAGGGAGAGGGAGAGGCCCTCGGTAGA
GCGACGGGCTTGGTTGAGGAAGATCTGTGGAAAGAGGAGCAAGGCGAAGC
AGACCATGGCTATGTATCCACATGTCTGAATGACAGCATTCAAAGGCATG
GACAGCCTAGAGATGGACGGAGGAGGGAGAGAGGAAGAAGGAGGGAGGAG
GCGGGAAGGGAGGGTTGGTTTTGTTATGTGCGAGTGCCTTTGCAGAAGCA
GCTTGGAATGAAAAATTTGCACAGAGAGAGAGTATATTAAGGTGGGGTCA
TATCTCTTTGGAAATATGGAGGAGTAGAGGCGTGCATGCGTGCATGGCAA
AGGGCAGCGAGAAATAGATACAGAGTGGGGCTTGGCACTTCGCATTGTGT
GAGCGAGAGAGAGCTAGGGTTGGGGATCCGTGGCGGCGATTGCGCTTACC
TTTGATGCTAGGAGTGAAGGAAGCTACAAAAAATCCTGTTACACGGCAAT
CTGCATCCGGATCCTGGTGTGTGTGTGAGTTGCCTGTCTGGGGGTGGGGA
GGGGGAAGGGAGGGAGGAGAGGGTGCGTTAGAGGAGAGAAGTGCGTGGAT
TGGAGGCCGGCAAGAACACAACAAGCGGGCAAAAATTTGGGCTTGGACAT
ATTATAACCTTGAAAGCATCTTCACACTTAAGCACTGTCATGTCCGAGGG
TGGTCAAGGGGTACGCACGTAGTCGCAGAGCAGCGATGTGAAGCCTCGTC
GAGATGCCGAGAGTCCTTCTCAGGAGGGACAAGCAGGCAGCACTGGCGAC
CAAAAATAAGAGGAGACACAAATGGAAAGAGTGGTGAGCATTGCCAGGTA
GCACATCAGCCGGAGGAAGGTTTCATATCAAGGGGAGAAAAAAAAACACA
TACTACATCCCGTCGGAGGATGATGGGGAATATTTTGGAGCAACGACACG
TACCCTGCCCGATCAACATATAATAGTTTCCCCGGAGGCTTCGGTTGTGT
GGCCCTGCGTCCCGCCTCCTCATACATACAACATATAATAGTTTCCCCGG
AGGCTTCGGTTGTGTGGCCCTGCGTCCCGCCTCCTTATACATACGACAGA
CCATCTATAAAAGGCATTGGGACTGTCCTAGATGACCAGCGAGGGCTTTT
CTAGGGCCATCCTACTGTCCTACTTTACCGTGACATCCATCACACCACAA
GCACACAGCGCCTTAATCATGCCTAGGCGTCCACGGCCGTTGCCCTCCCT
TCTTCTCCTCCTCATCCTCCTCTTCCTCCTCCCCCACTCCACGCTCCCTT
CCTCCCAACCTCTTCCCCTATCTGCCGCCTCCTCCTCTTCGAGCCCTCCT
CCTCCTCCACCATCACCATCTGCTTACGTGGATTTGCTGCACGACCCATG
TTTTGTCACGAGCAACGACATTCGAGATTTCAACATGTATGGTTTCAAAC
GCTGGCATAACGGAAGCACTTTGGGAGCCTGGACAGgtagttcctccctc
cctctttccctcccaccctctctctctcctcctttcttcccaaatcaggt
cctcaccattattcttaccaccgcacacctaccagTCACCTCTGGTGCCG
TGGATCAATACCTTGCCCCCGCTGTTGCCCAGAGCGCCGCCGCCAACCCC
AGAGGGTACCCCCCCCTCTGGCCCCTTCCTTCCCCCCTCCCTCCCTCCTG
CACCTCACTCTTGGACATCAACAGTGATGACGCCGCCAGTATTTCACAAG
CGGTGAGAGTGCGGGAGGGAAGGAGGTACCGGCTGAGTTTTTTGTTTGCC
GGGGATGCCCTGTCTTTGCATTTGCCCTCTTCAGGAGTAGGAGGAGGAGG
AGGAGGAGGAGGGGATATAAGGAGTGGTGGCGCAACTGCAGGAACACCAT
CAGGAGAAGGAGCAAAAGCAGGAGTGACACCAGGCCCTCCACCTTCCCAC
CAAGGATTGCCGCCGTTCAAATCGTTTTCGGTGTCGTGGCAAGGGACGGA
GGTCGGGCAGGTCTTCATTAATACGCTGGACCCCAGCACGGCGGGCAACG
GTTGGGATTCTGCGAGCTACGACGTGACTGCTCTTTCGGAGGAAGAACGA
CTCAGTCTCGAGGCCATAGAAAGGAAGAAATTTGGCAATAAGGGAGGTAA
GAAGCACGAGAAGAAGAAGGAGAAGAAGAAGGAGAAGAAGGAGGAGGAGA
AGGAAATTGAGAAGGCGGCAAAGGAGCGTGAGAACCTGATAATGCAGGCA
CGAGAGGAGGGTGAGAAGGAGAAATGGCTCACAGCCATCATCAACATCAC
CTCCACCACTAAGGGAAAAAGCAGTTTGTTCCTCACCGACGTCCATCTGT
ACGACCTCTCCACCCCCCTCCCTACTTCCCTCCCTTCCTCCTCCCCTTCC
TTTTCCACCTCTCGTATAATATTTCTGGTGGTCGCGCTCGGCATGGGGTT
GACTCTTTTTTGTTTGTTAGTGAATGTGTTGGCGTCGGCCAAGGGGGGCT
GGCGCTGGGACAAGCTCTCGCAGTGGCACAGAATGGAGGAGGAGGAGGAG
GAGGAGGAGATAGAGGAGGATGGGGGGGAAGGACTGAGAGGCTTGTATTA
TTATCCATCGTTGGAAATGCCGAGGAGGACGATGGAGGAAGGGGAGGAGG
TAAAGGGAAAAGGAGGGTGGGAGGACAGGAGGGACGATGAGGAGGAGGTA
CTTTTTCAGAGGGAGCGGGGACGAGGAAGGAGGGAGGGACGGAGAGAGGG
GAATGGGCTGCCGTCGGTGAGGCACCAAAGGGAGGAGGGGTACGGAAGCA
CGGGCTCTCGAAGAGATGGTGGCGGAGGAAGAGGAAAAGGAGACGGTGGA
GAAAGAGAGATTGATGTATAGGAAGGGAGGGAGGCATTGAGTGATATAAG
ACGGGTAATCGGGGAATTTTGATGAGCCGGGAGAAATAACAAGGAGAAGT
CGCCAAAACCAAATGGCAGATGCGATAGATGAGTGACAGAATGATCAGAA
GCTCAAATTAAACGGAAAACAAAATAAATGTGGTGTTGACCCACGAATGT
CAAAATACAAACATAGAAGAAGAGGAATTACGAAAATGAAAAAATAAGAA
GAATCTGAAAATAAAATAAGAGTGAAGGCTAAGCTTGCCAAATTATTAAA
ATGCACGCATTTTACAATGC
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protein sequence of NO28G01140.1

>NO28G01140.1-protein ID=NO28G01140.1-protein|Name=NO28G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MTSEGFSRAILLSYFTVTSITPQAHSALIMPRRPRPLPSLLLLLILLFLL
PHSTLPSSQPLPLSAASSSSSPPPPPPSPSAYVDLLHDPCFVTSNDIRDF
NMYGFKRWHNGSTLGAWTVTSGAVDQYLAPAVAQSAAANPRGYPPLWPLP
SPLPPSCTSLLDINSDDAASISQAVRVREGRRYRLSFLFAGDALSLHLPS
SGVGGGGGGGGDIRSGGATAGTPSGEGAKAGVTPGPPPSHQGLPPFKSFS
VSWQGTEVGQVFINTLDPSTAGNGWDSASYDVTALSEEERLSLEAIERKK
FGNKGGKKHEKKKEKKKEKKEEEKEIEKAAKERENLIMQAREEGEKEKWL
TAIINITSTTKGKSSLFLTDVHLYDLSTPLPTSLPSSSPSFSTSRIIFLV
VALGMGLTLFCLLVNVLASAKGGWRWDKLSQWHRMEEEEEEEEIEEDGGE
GLRGLYYYPSLEMPRRTMEEGEEVKGKGGWEDRRDDEEEVLFQRERGRGR
REGRREGNGLPSVRHQREEGYGSTGSRRDGGGGRGKGDGGEREIDV*
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Synonyms
Publications