NO28G01120, NO28G01120 (gene) Nannochloropsis oceanica

Overview
NameNO28G01120
Unique NameNO28G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length267
Alignment locationchr28:350222..350488 +

Link to JBrowse

Properties
Property NameValue
DescriptionGamma-tubulin complex component 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:350222..350488 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
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BLAST of NO28G01120 vs. NCBI_GenBank
Match: EWM26739.1 (gamma-tubulin complex component 2 [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 5.500e-19
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    2 TAEVRARAVASGFGPTMDAFAKNLTFHTEEFTRRLWENSRAQYQSSHLSNLLARLDYNVFFAAQFA 68
            TAEV+ARA ASGF P M+AFAKNL F+TE+F RRLWE+SR+QYQS+HLSNLL RLDYN +F+A+F+
Sbjct: 1167 TAEVQARAAASGFSPAMEAFAKNLDFYTEDFMRRLWEDSRSQYQSNHLSNLLGRLDYNGYFSAKFS 1232
The following BLAST results are available for this feature:
BLAST of NO28G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26739.15.500e-1972.73gamma-tubulin complex component 2 [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01120.1NO28G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01120.1NO28G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01120 ID=NO28G01120|Name=NO28G01120|organism=Nannochloropsis oceanica|type=gene|length=267bp
ATGACGGCCGAGGTGCGGGCACGGGCTGTTGCGAGTGGGTTTGGGCCGAC
AATGGATGCGTTTGCCAAGAATTTGACCTTTCACACGGAGGAGTTTACGA
GGAGATTGTGGGAGAATTCGCGTGCGCAGTACCAATCCAGCCATTTGTCT
AACTTATTGGCTCGATTGGATTACAATGTTTTTTTTGCCGCTCAATTTGC
TCGACCGACTTTGTCCTTATCGCCGGGGAGGCAGCAACAGCAACAGCAGC
AGCAGCCTGTTTCGTGA
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protein sequence of NO28G01120.1

>NO28G01120.1-protein ID=NO28G01120.1-protein|Name=NO28G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MTAEVRARAVASGFGPTMDAFAKNLTFHTEEFTRRLWENSRAQYQSSHLS
NLLARLDYNVFFAAQFARPTLSLSPGRQQQQQQQQPVS*
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Synonyms
Publications