NO28G01120.1, NO28G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01120.1
Unique NameNO28G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length267
Alignment locationchr28:350222..350488 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:350222..350488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01120.1 vs.
Match: EWM26739.1 (gamma-tubulin complex component 2 [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 5.500e-19
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    2 TAEVRARAVASGFGPTMDAFAKNLTFHTEEFTRRLWENSRAQYQSSHLSNLLARLDYNVFFAAQFA 68
            TAEV+ARA ASGF P M+AFAKNL F+TE+F RRLWE+SR+QYQS+HLSNLL RLDYN +F+A+F+
Sbjct: 1167 TAEVQARAAASGFSPAMEAFAKNLDFYTEDFMRRLWEDSRSQYQSNHLSNLLGRLDYNGYFSAKFS 1232
The following BLAST results are available for this feature:
BLAST of NO28G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26739.15.500e-1972.73gamma-tubulin complex component 2 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01120NO28G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01120.1NO28G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01120.1.cds1NO28G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01120.1 ID=NO28G01120.1|Name=NO28G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=267bp
ATGACGGCCGAGGTGCGGGCACGGGCTGTTGCGAGTGGGTTTGGGCCGAC
AATGGATGCGTTTGCCAAGAATTTGACCTTTCACACGGAGGAGTTTACGA
GGAGATTGTGGGAGAATTCGCGTGCGCAGTACCAATCCAGCCATTTGTCT
AACTTATTGGCTCGATTGGATTACAATGTTTTTTTTGCCGCTCAATTTGC
TCGACCGACTTTGTCCTTATCGCCGGGGAGGCAGCAACAGCAACAGCAGC
AGCAGCCTGTTTCGTGA
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protein sequence of NO28G01120.1

>NO28G01120.1-protein ID=NO28G01120.1-protein|Name=NO28G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MTAEVRARAVASGFGPTMDAFAKNLTFHTEEFTRRLWENSRAQYQSSHLS
NLLARLDYNVFFAAQFARPTLSLSPGRQQQQQQQQPVS*
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mRNA from alignment at chr28:350222..350488+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01120.1 ID=NO28G01120.1|Name=NO28G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=267bp|location=Sequence derived from alignment at chr28:350222..350488+ (Nannochloropsis oceanica)
ATGACGGCCGAGGTGCGGGCACGGGCTGTTGCGAGTGGGTTTGGGCCGAC
AATGGATGCGTTTGCCAAGAATTTGACCTTTCACACGGAGGAGTTTACGA
GGAGATTGTGGGAGAATTCGCGTGCGCAGTACCAATCCAGCCATTTGTCT
AACTTATTGGCTCGATTGGATTACAATGTTTTTTTTGCCGCTCAATTTGC
TCGACCGACTTTGTCCTTATCGCCGGGGAGGCAGCAACAGCAACAGCAGC
AGCAGCCTGTTTCGTGA
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Coding sequence (CDS) from alignment at chr28:350222..350488+

>NO28G01120.1 ID=NO28G01120.1|Name=NO28G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at chr28:350222..350488+ (Nannochloropsis oceanica)
ATGACGGCCGAGGTGCGGGCACGGGCTGTTGCGAGTGGGTTTGGGCCGAC
AATGGATGCGTTTGCCAAGAATTTGACCTTTCACACGGAGGAGTTTACGA
GGAGATTGTGGGAGAATTCGCGTGCGCAGTACCAATCCAGCCATTTGTCT
AACTTATTGGCTCGATTGGATTACAATGTTTTTTTTGCCGCTCAATTTGC
TCGACCGACTTTGTCCTTATCGCCGGGGAGGCAGCAACAGCAACAGCAGC
AGCAGCCTGTTTCGTGA
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Synonyms
Publications