NO28G00880, NO28G00880 (gene) Nannochloropsis oceanica

Overview
NameNO28G00880
Unique NameNO28G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length913
Alignment locationchr28:291438..292350 -

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Properties
Property NameValue
Description40s ribosomal protein s23
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:291438..292350 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006032Ribosomal_S12/S23
Homology
[Close]
BLAST of NO28G00880 vs. NCBI_GenBank
Match: EWM20921.1 (40s ribosomal protein s23 [Nannochloropsis gaditana])

HSP 1 Score: 288.5 bits (737), Expect = 1.200e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            MGKGKPAGSNAGRKLRVHRRNEKWASK WNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKV+KVSGVGLLALFKDKKEKPRS
Sbjct:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
[Close]
BLAST of NO28G00880 vs. NCBI_GenBank
Match: CBJ31696.1 (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit [Ectocarpus siliculosus])

HSP 1 Score: 261.9 bits (668), Expect = 1.200e-66
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            MGKGKPAG  AGRKLR+HRRNE+WASK +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKVVKV+GV LLAL+KDKKEKPRS
Sbjct:   62 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
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BLAST of NO28G00880 vs. NCBI_GenBank
Match: CCA18798.1 (Ribosomal protein S23 putative [Albugo laibachii Nc14])

HSP 1 Score: 247.7 bits (631), Expect = 2.300e-62
Identity = 121/145 (83.45%), Postives = 133/145 (91.72%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            MGK KPAG    RKLRVHRR ++WA K++NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKN KKIAAFVPRDGCLN++DENDEVLIAGFGR GHAVGDIPGVRFKVVKV+GV LLAL+K+KKEKPRS
Sbjct:    1 MGKHKPAGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNSKKIAAFVPRDGCLNYIDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 145
[Close]
BLAST of NO28G00880 vs. NCBI_GenBank
Match: XP_008620553.1 (40S ribosomal protein S23 [Saprolegnia diclina VS20] >XP_012195450.1 40S ribosomal protein S23 [Saprolegnia parasitica CBS 223.65] >EQC25985.1 40S ribosomal protein S23 [Saprolegnia diclina VS20] >KDO33814.1 40S ribosomal protein S23 [Saprolegnia parasitica CBS 223.65] >OQR84966.1 RS23, ribosomal protein 23 40S small ribosomal subunit [Achlya hypogyna])

HSP 1 Score: 246.9 bits (629), Expect = 3.900e-62
Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            M K KPAG    RKLRVHRR ++W  K++NK+HS+T MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKVVKV+GV LLAL+KDKKEKPRS
Sbjct:    1 MAKHKPAGIRCARKLRVHRRTQRWNQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 145
[Close]
BLAST of NO28G00880 vs. NCBI_GenBank
Match: OQR97993.1 (RS23, ribosomal protein 23 40S small ribosomal subunit [Thraustotheca clavata])

HSP 1 Score: 246.9 bits (629), Expect = 3.900e-62
Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            M K KPAG    RKLRVHRR ++W  K++NK+HS+T MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKVVKV+GV LLAL+KDKKEKPRS
Sbjct:    1 MAKHKPAGIRCARKLRVHRRTQRWHQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 145
[Close]
BLAST of NO28G00880 vs. NCBI_GenBank
Match: XP_002290100.1 (RS23, ribosomal protein 23 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED91852.1 RS23, ribosomal protein 23 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 245.4 bits (625), Expect = 1.100e-61
Identity = 119/142 (83.80%), Postives = 130/142 (91.55%), Query Frame = 0 
Query:    4 GKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            GKPAG   GRKLR+HRRN++W    + KAHSVT MKANP+GG+ MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLN+VDENDEVL+AGFGRSGHAVGDIPGVRFK VKV+GV LLAL+K+KKEKPRS
Sbjct:    2 GKPAGIRTGRKLRIHRRNQRWHDLKYTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143
[Close]
BLAST of NO28G00880 vs. NCBI_GenBank
Match: XP_009824591.1 (40S ribosomal protein S23 [Aphanomyces astaci] >ETV86119.1 40S ribosomal protein S23 [Aphanomyces astaci])

HSP 1 Score: 245.0 bits (624), Expect = 1.500e-61
Identity = 122/145 (84.14%), Postives = 133/145 (91.72%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            M K KPAG    RKLRVHRR+++W  K++NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK VRVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKVVKVSGV LLAL+K+KKEKPRS
Sbjct:    1 MAKHKPAGIRCARKLRVHRRSQRWHQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
[Close]
BLAST of NO28G00880 vs. NCBI_GenBank
Match: GAY05927.1 (Ribosomal protein S23 putative [Pythium insidiosum])

HSP 1 Score: 244.6 bits (623), Expect = 1.900e-61
Identity = 120/145 (82.76%), Postives = 131/145 (90.34%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            MGK KP+G    RKLRVHRRN++W  K++ K+HS+T MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKC RVQLIKN KKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKVVKVSGV LLAL+K KKEKPRS
Sbjct:    1 MGKHKPSGIRCARKLRVHRRNQRWHQKSYKKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNSKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKQKKEKPRS 145
[Close]
BLAST of NO28G00880 vs. NCBI_GenBank
Match: XP_008863841.1 (40S ribosomal protein S23 [Aphanomyces invadans] >ETW07748.1 40S ribosomal protein S23 [Aphanomyces invadans])

HSP 1 Score: 243.0 bits (619), Expect = 5.600e-61
Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            M K KPAG    RKLRVHRR+++W  K++NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK  RVQLIKNGKKIAAFVPRDGCLN+VDENDEVLIAGFGR GHAVGDIPGVRFKVVKVSGV LLAL+K+KKEKPRS
Sbjct:    1 MAKHKPAGIRCARKLRVHRRSQRWHQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
[Close]
BLAST of NO28G00880 vs. NCBI_GenBank
Match: XP_024577930.1 (40s ribosomal protein s23 [Plasmopara halstedii] >CEG41561.1 40s ribosomal protein s23 [Plasmopara halstedii])

HSP 1 Score: 242.7 bits (618), Expect = 7.300e-61
Identity = 120/145 (82.76%), Postives = 132/145 (91.03%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            MGK KP+G    RKLRVHRR ++WA K++NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KKIAAFVPRDGCLN+VDENDEVLI+GFGR GHAVGDIPGVRFKVVKVSGV LLAL+K+KKEKPRS
Sbjct:    1 MGKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNYVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
The following BLAST results are available for this feature:
BLAST of NO28G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20921.11.200e-7498.6240s ribosomal protein s23 [Nannochloropsis gaditan... [more]
CBJ31696.11.200e-6688.28Ribosomal protein S23, component of cytosolic 80S ... [more]
CCA18798.12.300e-6283.45Ribosomal protein S23 putative [Albugo laibachii N... [more]
XP_008620553.13.900e-6283.4540S ribosomal protein S23 [Saprolegnia diclina VS2... [more]
OQR97993.13.900e-6283.45RS23, ribosomal protein 23 40S small ribosomal sub... [more]
XP_002290100.11.100e-6183.80RS23, ribosomal protein 23 40S small ribosomal sub... [more]
XP_009824591.11.500e-6184.1440S ribosomal protein S23 [Aphanomyces astaci] >ET... [more]
GAY05927.11.900e-6182.76Ribosomal protein S23 putative [Pythium insidiosum... [more]
XP_008863841.15.600e-6183.4540S ribosomal protein S23 [Aphanomyces invadans] >... [more]
XP_024577930.17.300e-6182.7640s ribosomal protein s23 [Plasmopara halstedii] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL060nonsL060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004882NSK004882Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00880.1NO28G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|274579gene_9192Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00880.1NO28G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00880 ID=NO28G00880|Name=NO28G00880|organism=Nannochloropsis oceanica|type=gene|length=913bp
ATGGGGAAAGGgtaagtgggtccttgggctgagaggttggggtaaaaggc
aatggaagaagaaaggaggggatgcgcttgtctgtgtaggtgaggatgca
tagacgcgcctttcaccgcatctcctcctccaccaccattctctcctcct
tcatcttttcttcacagTAAACCCGCGGGGTCCAACGCCGGGCGCAAGCT
GCGGGTACACAGACGTAATGAGAAGTGGGCCAGCAAGACGTGGAACAAGG
CGCACTCTGTCACGCATATGAAGGCCAACCCTCTCGGTGGAGCCGCCATG
GCCAAGGGCATCGTCCTTGAGAAGATgttagtaaggaagtgctaggggtg
ggggagtccctgcttgttggaattttgcctgagcaagaaaagaactagga
ctgactttttctttcttgtctccctttcccttccttcccacagCGGTATT
GAGGCCAAGCAGCCGAACTCCGCTATTCGCAAATGCGTGCGTGTACAATT
GATCAAGAACGGGAAGAAGATCGCCGCTTTTGTGCCCCGAGATGGTTGCC
TCAACTTCGTCGACGAAAACgtaagttgttggttggtggggcgattgaca
cggcaaaggatagctttgtcggagcgtgaaaaagcttacgcacgcgcacg
atcttccctatttttgaattttctacagGACGAGGTACTGATTGCTGGTT
TCGGTCGCTCTGGGCACGCCGTGGGTGACATTCCCGGTGTCCGCTTTAAG
GTTGTCAAGGTCTCAGGGGTGGGCCTGCTCGCGCTCTTCAAGGACAAGAA
Ggtgcgtatttgaatgaacagggaagaaaggattaatgttctcaggctta
agatgactcatttatttttacgtttttcgtcttctctgatcacagGAGAA
GCCCCGATCGTAA
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protein sequence of NO28G00880.1

>NO28G00880.1-protein ID=NO28G00880.1-protein|Name=NO28G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAK
GIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDEND
EVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS*
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Synonyms
Publications