NO28G00880.1, NO28G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00880.1
Unique NameNO28G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length438
Alignment locationchr28:291438..292350 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:291438..292350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00880.1 vs.
Match: EWM20921.1 (40s ribosomal protein s23 [Nannochloropsis gaditana])

HSP 1 Score: 288.5 bits (737), Expect = 1.200e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0 
Query:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS 146
            MGKGKPAGSNAGRKLRVHRRNEKWASK WNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKV+KVSGVGLLALFKDKKEKPRS
Sbjct:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
The following BLAST results are available for this feature:
BLAST of NO28G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20921.11.200e-7498.6240s ribosomal protein s23 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00880NO28G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00880.1NO28G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00880.1.cds1NO28G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00880.1.cds2NO28G00880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00880.1.cds3NO28G00880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00880.1.cds4NO28G00880.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00880.1.cds5NO28G00880.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00880.1 ID=NO28G00880.1|Name=NO28G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=438bp
ATGGGGAAAGGTAAACCCGCGGGGTCCAACGCCGGGCGCAAGCTGCGGGT
ACACAGACGTAATGAGAAGTGGGCCAGCAAGACGTGGAACAAGGCGCACT
CTGTCACGCATATGAAGGCCAACCCTCTCGGTGGAGCCGCCATGGCCAAG
GGCATCGTCCTTGAGAAGATCGGTATTGAGGCCAAGCAGCCGAACTCCGC
TATTCGCAAATGCGTGCGTGTACAATTGATCAAGAACGGGAAGAAGATCG
CCGCTTTTGTGCCCCGAGATGGTTGCCTCAACTTCGTCGACGAAAACGAC
GAGGTACTGATTGCTGGTTTCGGTCGCTCTGGGCACGCCGTGGGTGACAT
TCCCGGTGTCCGCTTTAAGGTTGTCAAGGTCTCAGGGGTGGGCCTGCTCG
CGCTCTTCAAGGACAAGAAGGAGAAGCCCCGATCGTAA
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protein sequence of NO28G00880.1

>NO28G00880.1-protein ID=NO28G00880.1-protein|Name=NO28G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MGKGKPAGSNAGRKLRVHRRNEKWASKTWNKAHSVTHMKANPLGGAAMAK
GIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDEND
EVLIAGFGRSGHAVGDIPGVRFKVVKVSGVGLLALFKDKKEKPRS*
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mRNA from alignment at chr28:291438..292350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00880.1 ID=NO28G00880.1|Name=NO28G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=913bp|location=Sequence derived from alignment at chr28:291438..292350- (Nannochloropsis oceanica)
ATGGGGAAAGGGTAAGTGGGTCCTTGGGCTGAGAGGTTGGGGTAAAAGGC
AATGGAAGAAGAAAGGAGGGGATGCGCTTGTCTGTGTAGGTGAGGATGCA
TAGACGCGCCTTTCACCGCATCTCCTCCTCCACCACCATTCTCTCCTCCT
TCATCTTTTCTTCACAGTAAACCCGCGGGGTCCAACGCCGGGCGCAAGCT
GCGGGTACACAGACGTAATGAGAAGTGGGCCAGCAAGACGTGGAACAAGG
CGCACTCTGTCACGCATATGAAGGCCAACCCTCTCGGTGGAGCCGCCATG
GCCAAGGGCATCGTCCTTGAGAAGATGTTAGTAAGGAAGTGCTAGGGGTG
GGGGAGTCCCTGCTTGTTGGAATTTTGCCTGAGCAAGAAAAGAACTAGGA
CTGACTTTTTCTTTCTTGTCTCCCTTTCCCTTCCTTCCCACAGCGGTATT
GAGGCCAAGCAGCCGAACTCCGCTATTCGCAAATGCGTGCGTGTACAATT
GATCAAGAACGGGAAGAAGATCGCCGCTTTTGTGCCCCGAGATGGTTGCC
TCAACTTCGTCGACGAAAACGTAAGTTGTTGGTTGGTGGGGCGATTGACA
CGGCAAAGGATAGCTTTGTCGGAGCGTGAAAAAGCTTACGCACGCGCACG
ATCTTCCCTATTTTTGAATTTTCTACAGGACGAGGTACTGATTGCTGGTT
TCGGTCGCTCTGGGCACGCCGTGGGTGACATTCCCGGTGTCCGCTTTAAG
GTTGTCAAGGTCTCAGGGGTGGGCCTGCTCGCGCTCTTCAAGGACAAGAA
GGTGCGTATTTGAATGAACAGGGAAGAAAGGATTAATGTTCTCAGGCTTA
AGATGACTCATTTATTTTTACGTTTTTCGTCTTCTCTGATCACAGGAGAA
GCCCCGATCGTAA
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Coding sequence (CDS) from alignment at chr28:291438..292350-

>NO28G00880.1 ID=NO28G00880.1|Name=NO28G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at chr28:291438..292350- (Nannochloropsis oceanica)
ATGGGGAAAGGTAAACCCGCGGGGTCCAACGCCGGGCGCAAGCTGCGGGT
ACACAGACGTAATGAGAAGTGGGCCAGCAAGACGTGGAACAAGGCGCACT
CTGTCACGCATATGAAGGCCAACCCTCTCGGTGGAGCCGCCATGGCCAAG
GGCATCGTCCTTGAGAAGATCGGTATTGAGGCCAAGCAGCCGAACTCCGC
TATTCGCAAATGCGTGCGTGTACAATTGATCAAGAACGGGAAGAAGATCG
CCGCTTTTGTGCCCCGAGATGGTTGCCTCAACTTCGTCGACGAAAACGAC
GAGGTACTGATTGCTGGTTTCGGTCGCTCTGGGCACGCCGTGGGTGACAT
TCCCGGTGTCCGCTTTAAGGTTGTCAAGGTCTCAGGGGTGGGCCTGCTCG
CGCTCTTCAAGGACAAGAAGGAGAAGCCCCGATCGTAA
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Synonyms
Publications