NO28G00770, NO28G00770 (gene) Nannochloropsis oceanica

Overview
NameNO28G00770
Unique NameNO28G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1132
Alignment locationchr28:257844..258975 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:257844..258975 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010865DUF1499
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO28G00770 vs. NCBI_GenBank
Match: EWM20913.1 (Protein of unknown function DUF1499 [Nannochloropsis gaditana])

HSP 1 Score: 311.2 bits (796), Expect = 3.700e-81
Identity = 155/223 (69.51%), Postives = 184/223 (82.51%), Query Frame = 0
Query:   84 QSNDKGLSRERYLRWSSTTTAFLLAAATGVTF-APRATHARTQPLGVIDELLAECPTEKSCTSSQDDRPPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITAEEGYLRADLTEGGKINEIEFYFTPNDSIIQFRAARRGEGDDKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGPSYRDDAPSPEELQSQQAYKDNDPKSPEWGKPSPYP 306
            +S+  G+ R++YLR +S    F   A T +T   PRAT AR  PLGVID+LLAECPTEKSC SSQDDRPPVFQEPW+Y+D+TQEKAMRRL++YVE++PG E I+AE+ YLR ++ E G I++ EFYFTPNDSIIQFR+ARRG+G D+GANQKRMEK+RIALGFEKIPVLRNRRRALFFLESPLDGWGPSYR+DAP PE+L   QAY D+DP +P W  P PYP
Sbjct:   81 RSHSHGIPRDQYLRLTSAAGNFF--ATTILTIQTPRATQARLLPLGVIDQLLAECPTEKSCASSQDDRPPVFQEPWEYEDATQEKAMRRLRSYVENLPGAETISAEDRYLRFEIKEDGNIDDTEFYFTPNDSIIQFRSARRGDGRDRGANQKRMEKIRIALGFEKIPVLRNRRRALFFLESPLDGWGPSYREDAPRPEDL--DQAYGDSDPLAPGWEAPPPYP 299          
BLAST of NO28G00770 vs. NCBI_GenBank
Match: CBN77020.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 152.1 bits (383), Expect = 2.900e-33
Identity = 87/215 (40.47%), Postives = 122/215 (56.74%), Query Frame = 0
Query:   69 RESKRHPRSPIMMAAQSNDKGLSR-------ERYLRWSSTTTAFLLAAATGVTFAPRATHARTQPLGVIDELLAECPTEKSCTSSQDDRPPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITAEEGYLRADLTE----GGKINEIEFYFTPNDSIIQFRAARRGEGDDKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGPSY 273
            R ++    SP + A Q    G S        +  +  +   + F  A             + +  LGV+D+LLA+CP+  +C SSQDDRP  F EPW Y D   E++M RL+ Y+E   G +VI +   YLR +          +++ EFYFTP D+++QFR ARR    D GAN++RM+ +R AL FE IPVLRNR+RALFF ESP+D +GPS+
Sbjct:   59 RSARDCAESPDVCAMQQGTAGASGLSATLPVDAAVTRTEALSGFFQAVLLSTAVLANPPDSNSDGLGVVDDLLADCPSTPTCVSSQDDRPYPFMEPWSY-DGPFERSMSRLRNYLE-FNGAKVIASSPRYLRVEFEAVNAIPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRRRMDGIRQALKFESIPVLRNRKRALFFGESPIDSFGPSF 271          
BLAST of NO28G00770 vs. NCBI_GenBank
Match: XP_005760391.1 (hypothetical protein EMIHUDRAFT_106310 [Emiliania huxleyi CCMP1516] >EOD07962.1 hypothetical protein EMIHUDRAFT_106310 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 142.1 bits (357), Expect = 3.000e-30
Identity = 80/185 (43.24%), Postives = 112/185 (60.54%), Query Frame = 0
Query:  131 DELLAECPTEKSCTSSQDDRPPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITAEEGYLRADLTE----GGKINEIEFYFTPNDSIIQFRAARRGEGDDKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGP-SYRDDAPS-------PEELQSQQAYKDNDPKSPEWGKPSP 304
            D + ++C     C SSQDDRP V+  PW  + +    AM RL+  +E     +V+  +E YLRA+       G  +++ EF+FTP+D ++QFRAARRG+  D GAN+KR+E+ RIALG+EK+ VLRNRRRAL  +ESP D +GP +Y  D          P E   ++ Y D DP +  W KP+P
Sbjct:   33 DGIFSDC--SGFCVSSQDDRPAVWDNPWVAEQAL-PSAMERLRRVIELKLQGKVVEQDERYLRAEFASRGPLGDAVDDAEFFFTPDDVLVQFRAARRGDAPDFGANRKRLERARIALGWEKVEVLRNRRRALVVVESPFDSFGPATYERDELGFTNRDLVPAEANQKELYGDLDPLAAPWRKPTP 214          
BLAST of NO28G00770 vs. NCBI_GenBank
Match: CEM27118.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 140.6 bits (353), Expect = 8.700e-30
Identity = 75/150 (50.00%), Postives = 101/150 (67.33%), Query Frame = 0
Query:  127 LGVIDELLAECPT-EKSCTSSQDDRPPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEV--ITAEEGYLRADLTEG--GKINEIEFYFTPNDSIIQFRAARRGEGDDKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGPS 272
            LGV  +LL+ CP    SC SSQDDRP  FQEPW Y++   +  MRRLKA +  +P V+V  + + E YLR ++ +     ++++EFY TP D+ +QFRAARR    D G N++R+E +RIALG EK+PVLR  RR +F  ESPLD +GPS
Sbjct:  116 LGVDQDLLSYCPDGSSSCVSSQDDRPAFFQEPWMYEEIEPDMLMRRLKAALALLPKVQVKQVVSSERYLRVEIADETLKTVDDVEFYLTPGDNTVQFRAARRDSLPDFGVNRRRLESIRIALGLEKVPVLR-YRRTIFPWESPLDQFGPS 264          
BLAST of NO28G00770 vs. NCBI_GenBank
Match: OAE25430.1 (hypothetical protein AXG93_2818s1070 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 110.9 bits (276), Expect = 7.400e-21
Identity = 61/149 (40.94%), Postives = 90/149 (60.40%), Query Frame = 0
Query:  127 LGVIDELLAECPTEKSCTSSQDDRPPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITAEEGYLRADL--TEGGKINEIEFYFT--PNDSIIQFRAARRGEGD-DKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGP 271
            +GV+DE L  C +  +C SS DDRP  F  PW++     + A+  LK  + SM    +   EE Y+ A     E G I+++EF F+    D+ +  RAA R +G  DK  N++R+E++R +L +E++P+LRNR R LFFLESP D +GP
Sbjct:  170 IGVVDETLGTCNSTPNCVSSFDDRPNFFVAPWEFPGQLSD-AVNALKETLSSMGADIIAEPEERYVHAKFIDKEDGVIDDVEFLFSNPSEDATVVIRAASRAQGTADKARNRERLERIRSSLTWEEVPILRNRSRTLFFLESPWDSFGP 317          
BLAST of NO28G00770 vs. NCBI_GenBank
Match: PTQ42260.1 (hypothetical protein MARPO_0030s0012 [Marchantia polymorpha])

HSP 1 Score: 110.9 bits (276), Expect = 7.400e-21
Identity = 61/149 (40.94%), Postives = 90/149 (60.40%), Query Frame = 0
Query:  127 LGVIDELLAECPTEKSCTSSQDDRPPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITAEEGYLRADL--TEGGKINEIEFYFT--PNDSIIQFRAARRGEGD-DKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGP 271
            +GV+DE L  C +  +C SS DDRP  F  PW++     + A+  LK  + SM    +   EE Y+ A     E G I+++EF F+    D+ +  RAA R +G  DK  N++R+E++R +L +E++P+LRNR R LFFLESP D +GP
Sbjct:  170 IGVVDETLGTCNSTPNCVSSFDDRPNFFVAPWEFPGQLSD-AVNALKETLSSMGADIIAEPEERYVHAKFIDKEDGVIDDVEFLFSNPSEDATVVIRAASRAQGTADKARNRERLERIRSSLTWEEVPILRNRSRTLFFLESPWDSFGP 317          
BLAST of NO28G00770 vs. NCBI_GenBank
Match: PNH12254.1 (hypothetical protein TSOC_000844, partial [Tetrabaena socialis])

HSP 1 Score: 110.5 bits (275), Expect = 9.600e-21
Identity = 58/150 (38.67%), Postives = 93/150 (62.00%), Query Frame = 0
Query:  127 LGVIDELLAECPTEKSCTSSQDDRPPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITA---EEGYLRADLTEGGK-INEIEFYFTPNDSIIQFR-AARRGEGDDKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGPS 272
            +GV+D  L  C   ++C S+ DDRP  F  PW YD++T++ A+ ++   VE+  G     A     GY+ A  + G +  +++EF     D+ +  R AAR  +G D G N++R+E++R+ALG+E +P+LRNR+R L F+ESP D +GP+
Sbjct:    1 IGVVDGTLGSCAGWRACLSTFDDRPGHFVAPWTYDEATRQAAVSQIVEAVEAQGGAVRQAANYESYGYVYATFSSGWQGTDDVEFLLPDADNTVVLRSAARAPDGLDLGRNERRLEQLRVALGWEPVPILRNRQRTLLFVESPWDSFGPT 150          
BLAST of NO28G00770 vs. NCBI_GenBank
Match: XP_002177859.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50673.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 110.2 bits (274), Expect = 1.300e-20
Identity = 88/252 (34.92%), Postives = 124/252 (49.21%), Query Frame = 0
Query:   74 HPRSPIMMAAQSNDKGLSRERYLRWSSTTTAFLL------AAATGVTFAPRATHARTQPLGVIDELLAECP------TEKSCTSSQDDRPPVFQEPWQYDDSTQ---EKAMRRLKAYVESM-----PGVEVITAEEGYLRADLTEG--GKINEIEFYFTPNDSIIQFRAARRGEGDDKG-----ANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGPSYRDDAPSPE----ELQSQQAYKDNDPK 295
            HP+  ++    SN+  +++ R   +SST     L      ++A   T     T      LGV D LLA+CP          CTSSQDD P  F EPW Y +S     +  MR+L   ++++       V V+  E  YLR   T+G  G+ +  EFYFTP+D+ +QFR A               N +R E +R  + + K+PVLRNRRRALFF+ES +D +GP      P  E    EL+ +Q   D DP+
Sbjct:   41 HPQGTLL----SNNAAVNQRRRTLFSSTAATLGLLGCGTPSSAVVETVGKDPTCNDGTCLGVWDGLLADCPHGMAGKQGAGCTSSQDDTPGTFSEPWDYSESDSLDWQHQMRKLLPVIQAVSAKRGDSVRVLLQENRYLRVAFTDGRSGETSTGEFYFTPDDTTVQFRIASLESSSTSPFTPSLRNIERAELLRKEMRYLKLPVLRNRRRALFFVESEVDTFGPGSAALGPPAEMRTGELEGRQ---DIDPR 285          
BLAST of NO28G00770 vs. NCBI_GenBank
Match: GAQ84922.1 (hypothetical protein KFL_002120160 [Klebsormidium nitens])

HSP 1 Score: 109.4 bits (272), Expect = 2.100e-20
Identity = 63/148 (42.57%), Postives = 93/148 (62.84%), Query Frame = 0
Query:  127 LGVIDELLAECPTEKSCTSSQDDRPPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITAEEGYLRAD-LTEGGKINEIEFYF--TPNDSIIQFRAARRG-EGDDKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGP 271
            +GV+D+ LA C +  +C SS DDRPP F  PW+Y  S  E A+R L+  +E + G  V  A++ Y+ A  + E G I+++E+ F  + +D I+Q  AA R  E  D G N  R+EK+R  L +E++P+LRNR R  +F+ESP D +GP
Sbjct:   85 IGVVDDTLASCGSITNCVSSFDDRPPFFCAPWEYPASLPE-AVRTLEQQIERLGGT-VNEAQQKYVYATFVDEDGVIDDVEWLFSDSASDRIVQIHAASRAREQPDGGRNATRLEKIRAGLQWEQVPILRNRVRKFYFIESPWDTFGP 230          
BLAST of NO28G00770 vs. NCBI_GenBank
Match: XP_002289235.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92772.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 106.3 bits (264), Expect = 1.800e-19
Identity = 73/179 (40.78%), Postives = 97/179 (54.19%), Query Frame = 0
Query:  127 LGVIDELLAECPTEKS---------CTSSQDDRPPVFQEPWQYDD--STQEKAMRRLKAYVESM-----PGVEVITAEEGYLRADLTEG--GKINEIEFYFTPNDSIIQFRAA-----RRGEGDDKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGPSYRDDAPSPEEL 283
            LGV D LLA+CP   +         C SSQDD P +F EPW Y D  +  E+ M  L   +++        V+V      YLR   T+G  G+ +  EFYFTPND I+QFR A       G      +N +R E++R +L + K+PVLRNR+R LFF+ES LD +GP      P PEE+
Sbjct:   35 LGVWDGLLADCPHGTNNLFGSGGAGCVSSQDDTPGIFAEPWDYSDENTDYERQMGMLLLALQTASKQHGDQVKVDVQSGRYLRVFFTDGSSGETSVGEFYFTPNDYIVQFRIASTSQMTAGLVGRSLSNMERSERVRKSLRYLKVPVLRNRKRTLFFVESDLDAFGPGSAALGP-PEEM 212          
The following BLAST results are available for this feature:
BLAST of NO28G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20913.13.700e-8169.51Protein of unknown function DUF1499 [Nannochlorops... [more]
CBN77020.12.900e-3340.47conserved unknown protein [Ectocarpus siliculosus][more]
XP_005760391.13.000e-3043.24hypothetical protein EMIHUDRAFT_106310 [Emiliania ... [more]
CEM27118.18.700e-3050.00unnamed protein product [Vitrella brassicaformis C... [more]
OAE25430.17.400e-2140.94hypothetical protein AXG93_2818s1070 [Marchantia p... [more]
PTQ42260.17.400e-2140.94hypothetical protein MARPO_0030s0012 [Marchantia p... [more]
PNH12254.19.600e-2138.67hypothetical protein TSOC_000844, partial [Tetraba... [more]
XP_002177859.11.300e-2034.92predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAQ84922.12.100e-2042.57hypothetical protein KFL_002120160 [Klebsormidium ... [more]
XP_002289235.11.800e-1940.78predicted protein [Thalassiosira pseudonana CCMP13... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004874NSK004874Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00770.1NO28G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100061g15gene9495Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00770.1NO28G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00770 ID=NO28G00770|Name=NO28G00770|organism=Nannochloropsis oceanica|type=gene|length=1132bp
ATGCTCATGgtaggtatggtagatgtggtaataagagaggagggcaagca
gtagagactcggaggagttgacataatgatgtggccatgagtcatggtca
tcttccgttcttggcgaccgcgtgaaagccttactaactcgcacaaacca
acatgtaaacacacagGACTCGTCCCTGACTAAGACGATGACGACAACCC
CACCAAGGAGACGGAGTACGTGTCGGCCGCTCAGCTTTCCCTCCTTCGCT
TTCTCATGTTCATCATCACCCTCCTCATTGATGCTGCTGCTGGTCCTCCT
TCTGCCCTTGCAACTCGAGGGCACCACCGCGTTCGGCATTGGGGGCCCAG
GCATGTGCATAAGGGAGAGTAAGAGACATCCTCGCAGCCCTATCATGATG
GCCGCTCAGTCAAACGACAAGGGGCTTTCCCGTGAGCGGTATCTGCGTTG
GTCCTCCACCACCACCGCTTTTCTGTTGGCCGCGGCGACTGGTGTGACAT
TCGCTCCTCGAGCGACCCATGCACGAACACAGCCCCTGGGGGTGATTGAT
GAGCTGTTGGCTGAGTGCCCAACGGAGAAGAGTTGTACCTCTAGCCAAGA
TGACCGGCCGCCTGTCTTTCAGGAGCCTTGGCAGTACGATGATTCAACGC
AAGAAAAGGCCATGCGCCGTTTAAAAGCTTACGTAGAAAGTATGCCGGGC
GTGGAGGTGATAACCGCCGAGGAGGGTTACCTGCGTGCGGATCTCACGGA
GGGTGGAAAGATAAACGAGATAGAATTTTATTTCACCCCCAATGACAGCA
TCATTCAATTTCGCGCGGCCCGTCGAGGAGAAGGAGACGACAAGGGGGCC
AATCAAAAGCGAATGGAAAAAATGAGGATCGCCCTAGGATTTGAAAAGAT
CCCTGTCCTGCGCAATCGGCGACGGGCTTTATTCTTTCTCGAAAGTCCGC
TGGATGGGTGGGGTCCCTCCTACAGGGATGATGCTCCAAGCCCTGAAGAG
CTGCAATCACAGCAGGCCTACAAAGACAACGACCCCAAGTCTCCAGAATG
GGGAAAGCCCTCCCCCTACCCCAGTTTCCTGCAAGGTGGAACTTTCCTGC
GTCAAGAAGGGAGGGCACTAAATAGCAATTGA
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protein sequence of NO28G00770.1

>NO28G00770.1-protein ID=NO28G00770.1-protein|Name=NO28G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MLMDSSLTKTMTTTPPRRRSTCRPLSFPSFAFSCSSSPSSLMLLLVLLLP
LQLEGTTAFGIGGPGMCIRESKRHPRSPIMMAAQSNDKGLSRERYLRWSS
TTTAFLLAAATGVTFAPRATHARTQPLGVIDELLAECPTEKSCTSSQDDR
PPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITAEEGYLRADLTEGG
KINEIEFYFTPNDSIIQFRAARRGEGDDKGANQKRMEKMRIALGFEKIPV
LRNRRRALFFLESPLDGWGPSYRDDAPSPEELQSQQAYKDNDPKSPEWGK
PSPYPSFLQGGTFLRQEGRALNSN*
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Synonyms
Publications