NO28G00770.1, NO28G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00770.1
Unique NameNO28G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length975
Alignment locationchr28:257844..258975 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:257844..258975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00770.1 vs.
Match: EWM20913.1 (Protein of unknown function DUF1499 [Nannochloropsis gaditana])

HSP 1 Score: 313.5 bits (802), Expect = 7.500e-82
Identity = 181/306 (59.15%), Postives = 218/306 (71.24%), Query Frame = 0 
Query:   11 MTTTPP------RRRSTCRPLSFPSFAFSCSSSPSSLMLLLVLLLPLQLEGTTAFGIGGPGMCIRE---SKRHPR-SPIMMAAQSNDKGLSRERYLRWSSTTTAFLLAAATGVTF-APRATHARTQPLGVIDELLAECPTEKSCTSSQDDRPPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITAEEGYLRADLTEGGKINEIEFYFTPNDSIIQFRAARRGEGDDKGANQKRMEKMRIALGFEKIPVLRNRRRALFFLESPLDGWGPSYRDDAPSPEELQSQQAYKDNDPKSPEWGKPSPYP 306
            MTT  P      RR  TC+  + PS     S+S  SLML+  LLL L +  + AF +       R    S+ H   S      +S+  G+ R++YLR +S    F   A T +T   PRAT AR  PLGVID+LLAECPTEKSC SSQDDRPPVFQEPW+Y+D+TQEKAMRRL++YVE++PG E I+AE+ YLR ++ E G I++ EFYFTPNDSIIQFR+ARRG+G D+GANQKRMEK+RIALGFEKIPVLRNRRRALFFLESPLDGWGPSYR+DAP PE+L   QAY D+DP +P W  P PYP
Sbjct:    1 MTTVWPSGRQRVRRCRTCK--TSPSLFTPPSTSSPSLMLIEALLL-LFIVASNAFLLPHRSNFSRAKSLSRAHVEGSDRGSERRSHSHGIPRDQYLRLTSAAGNFF--ATTILTIQTPRATQARLLPLGVIDQLLAECPTEKSCASSQDDRPPVFQEPWEYEDATQEKAMRRLRSYVENLPGAETISAEDRYLRFEIKEDGNIDDTEFYFTPNDSIIQFRSARRGDGRDRGANQKRMEKIRIALGFEKIPVLRNRRRALFFLESPLDGWGPSYREDAPRPEDL--DQAYGDSDPLAPGWEAPPPYP 299
The following BLAST results are available for this feature:
BLAST of NO28G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20913.17.500e-8259.15Protein of unknown function DUF1499 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00770NO28G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00770.1NO28G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00770.1.cds1NO28G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00770.1.cds2NO28G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00770.1 ID=NO28G00770.1|Name=NO28G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
ATGCTCATGGACTCGTCCCTGACTAAGACGATGACGACAACCCCACCAAG
GAGACGGAGTACGTGTCGGCCGCTCAGCTTTCCCTCCTTCGCTTTCTCAT
GTTCATCATCACCCTCCTCATTGATGCTGCTGCTGGTCCTCCTTCTGCCC
TTGCAACTCGAGGGCACCACCGCGTTCGGCATTGGGGGCCCAGGCATGTG
CATAAGGGAGAGTAAGAGACATCCTCGCAGCCCTATCATGATGGCCGCTC
AGTCAAACGACAAGGGGCTTTCCCGTGAGCGGTATCTGCGTTGGTCCTCC
ACCACCACCGCTTTTCTGTTGGCCGCGGCGACTGGTGTGACATTCGCTCC
TCGAGCGACCCATGCACGAACACAGCCCCTGGGGGTGATTGATGAGCTGT
TGGCTGAGTGCCCAACGGAGAAGAGTTGTACCTCTAGCCAAGATGACCGG
CCGCCTGTCTTTCAGGAGCCTTGGCAGTACGATGATTCAACGCAAGAAAA
GGCCATGCGCCGTTTAAAAGCTTACGTAGAAAGTATGCCGGGCGTGGAGG
TGATAACCGCCGAGGAGGGTTACCTGCGTGCGGATCTCACGGAGGGTGGA
AAGATAAACGAGATAGAATTTTATTTCACCCCCAATGACAGCATCATTCA
ATTTCGCGCGGCCCGTCGAGGAGAAGGAGACGACAAGGGGGCCAATCAAA
AGCGAATGGAAAAAATGAGGATCGCCCTAGGATTTGAAAAGATCCCTGTC
CTGCGCAATCGGCGACGGGCTTTATTCTTTCTCGAAAGTCCGCTGGATGG
GTGGGGTCCCTCCTACAGGGATGATGCTCCAAGCCCTGAAGAGCTGCAAT
CACAGCAGGCCTACAAAGACAACGACCCCAAGTCTCCAGAATGGGGAAAG
CCCTCCCCCTACCCCAGTTTCCTGCAAGGTGGAACTTTCCTGCGTCAAGA
AGGGAGGGCACTAAATAGCAATTGA
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protein sequence of NO28G00770.1

>NO28G00770.1-protein ID=NO28G00770.1-protein|Name=NO28G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MLMDSSLTKTMTTTPPRRRSTCRPLSFPSFAFSCSSSPSSLMLLLVLLLP
LQLEGTTAFGIGGPGMCIRESKRHPRSPIMMAAQSNDKGLSRERYLRWSS
TTTAFLLAAATGVTFAPRATHARTQPLGVIDELLAECPTEKSCTSSQDDR
PPVFQEPWQYDDSTQEKAMRRLKAYVESMPGVEVITAEEGYLRADLTEGG
KINEIEFYFTPNDSIIQFRAARRGEGDDKGANQKRMEKMRIALGFEKIPV
LRNRRRALFFLESPLDGWGPSYRDDAPSPEELQSQQAYKDNDPKSPEWGK
PSPYPSFLQGGTFLRQEGRALNSN*
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mRNA from alignment at chr28:257844..258975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00770.1 ID=NO28G00770.1|Name=NO28G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1132bp|location=Sequence derived from alignment at chr28:257844..258975- (Nannochloropsis oceanica)
ATGCTCATGGTAGGTATGGTAGATGTGGTAATAAGAGAGGAGGGCAAGCA
GTAGAGACTCGGAGGAGTTGACATAATGATGTGGCCATGAGTCATGGTCA
TCTTCCGTTCTTGGCGACCGCGTGAAAGCCTTACTAACTCGCACAAACCA
ACATGTAAACACACAGGACTCGTCCCTGACTAAGACGATGACGACAACCC
CACCAAGGAGACGGAGTACGTGTCGGCCGCTCAGCTTTCCCTCCTTCGCT
TTCTCATGTTCATCATCACCCTCCTCATTGATGCTGCTGCTGGTCCTCCT
TCTGCCCTTGCAACTCGAGGGCACCACCGCGTTCGGCATTGGGGGCCCAG
GCATGTGCATAAGGGAGAGTAAGAGACATCCTCGCAGCCCTATCATGATG
GCCGCTCAGTCAAACGACAAGGGGCTTTCCCGTGAGCGGTATCTGCGTTG
GTCCTCCACCACCACCGCTTTTCTGTTGGCCGCGGCGACTGGTGTGACAT
TCGCTCCTCGAGCGACCCATGCACGAACACAGCCCCTGGGGGTGATTGAT
GAGCTGTTGGCTGAGTGCCCAACGGAGAAGAGTTGTACCTCTAGCCAAGA
TGACCGGCCGCCTGTCTTTCAGGAGCCTTGGCAGTACGATGATTCAACGC
AAGAAAAGGCCATGCGCCGTTTAAAAGCTTACGTAGAAAGTATGCCGGGC
GTGGAGGTGATAACCGCCGAGGAGGGTTACCTGCGTGCGGATCTCACGGA
GGGTGGAAAGATAAACGAGATAGAATTTTATTTCACCCCCAATGACAGCA
TCATTCAATTTCGCGCGGCCCGTCGAGGAGAAGGAGACGACAAGGGGGCC
AATCAAAAGCGAATGGAAAAAATGAGGATCGCCCTAGGATTTGAAAAGAT
CCCTGTCCTGCGCAATCGGCGACGGGCTTTATTCTTTCTCGAAAGTCCGC
TGGATGGGTGGGGTCCCTCCTACAGGGATGATGCTCCAAGCCCTGAAGAG
CTGCAATCACAGCAGGCCTACAAAGACAACGACCCCAAGTCTCCAGAATG
GGGAAAGCCCTCCCCCTACCCCAGTTTCCTGCAAGGTGGAACTTTCCTGC
GTCAAGAAGGGAGGGCACTAAATAGCAATTGA
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Coding sequence (CDS) from alignment at chr28:257844..258975-

>NO28G00770.1 ID=NO28G00770.1|Name=NO28G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr28:257844..258975- (Nannochloropsis oceanica)
ATGCTCATGGACTCGTCCCTGACTAAGACGATGACGACAACCCCACCAAG
GAGACGGAGTACGTGTCGGCCGCTCAGCTTTCCCTCCTTCGCTTTCTCAT
GTTCATCATCACCCTCCTCATTGATGCTGCTGCTGGTCCTCCTTCTGCCC
TTGCAACTCGAGGGCACCACCGCGTTCGGCATTGGGGGCCCAGGCATGTG
CATAAGGGAGAGTAAGAGACATCCTCGCAGCCCTATCATGATGGCCGCTC
AGTCAAACGACAAGGGGCTTTCCCGTGAGCGGTATCTGCGTTGGTCCTCC
ACCACCACCGCTTTTCTGTTGGCCGCGGCGACTGGTGTGACATTCGCTCC
TCGAGCGACCCATGCACGAACACAGCCCCTGGGGGTGATTGATGAGCTGT
TGGCTGAGTGCCCAACGGAGAAGAGTTGTACCTCTAGCCAAGATGACCGG
CCGCCTGTCTTTCAGGAGCCTTGGCAGTACGATGATTCAACGCAAGAAAA
GGCCATGCGCCGTTTAAAAGCTTACGTAGAAAGTATGCCGGGCGTGGAGG
TGATAACCGCCGAGGAGGGTTACCTGCGTGCGGATCTCACGGAGGGTGGA
AAGATAAACGAGATAGAATTTTATTTCACCCCCAATGACAGCATCATTCA
ATTTCGCGCGGCCCGTCGAGGAGAAGGAGACGACAAGGGGGCCAATCAAA
AGCGAATGGAAAAAATGAGGATCGCCCTAGGATTTGAAAAGATCCCTGTC
CTGCGCAATCGGCGACGGGCTTTATTCTTTCTCGAAAGTCCGCTGGATGG
GTGGGGTCCCTCCTACAGGGATGATGCTCCAAGCCCTGAAGAGCTGCAAT
CACAGCAGGCCTACAAAGACAACGACCCCAAGTCTCCAGAATGGGGAAAG
CCCTCCCCCTACCCCAGTTTCCTGCAAGGTGGAACTTTCCTGCGTCAAGA
AGGGAGGGCACTAAATAGCAATTGA
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Synonyms
Publications