NO28G00720, NO28G00720 (gene) Nannochloropsis oceanica

Overview
NameNO28G00720
Unique NameNO28G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length968
Alignment locationchr28:246504..247471 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:246504..247471 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO28G00720 vs. NCBI_GenBank
Match: XP_005855566.1 (hypothetical protein NGA_2012800, partial [Nannochloropsis gaditana CCMP526] >EKU20793.1 hypothetical protein NGA_2012800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 147.1 bits (370), Expect = 5.400e-32
Identity = 76/110 (69.09%), Postives = 90/110 (81.82%), Query Frame = 0 
Query:   74 MDSQQEAKAQAAEALAKNYALKLDVMKQLENFEIARRMYFDHKRESNAMYWMAFTLLMKRSKIENTRYLDFFSRKFAAENMYARCFLEIKEESEKLKHGGEHKSTLEMGS 184
            M   Q+AKA+A E+LA+NYALKLDV+KQ+E FEIARR YFD+KR SNA+Y MAFT ++KRSK ENT+YL+FF+RK AAEN Y RC LE+ EESEKLKHGG HKS  E  S
Sbjct:   35 MKCYQDAKARAMESLAQNYALKLDVVKQIEEFEIARREYFDNKRGSNAIYLMAFTEILKRSKAENTQYLEFFNRKVAAENTYVRCILEMIEESEKLKHGGAHKSPCERTS 144
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BLAST of NO28G00720 vs. NCBI_GenBank
Match: EWM20920.1 (hypothetical protein Naga_100061g18 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 5.400e-32
Identity = 76/110 (69.09%), Postives = 90/110 (81.82%), Query Frame = 0 
Query:   74 MDSQQEAKAQAAEALAKNYALKLDVMKQLENFEIARRMYFDHKRESNAMYWMAFTLLMKRSKIENTRYLDFFSRKFAAENMYARCFLEIKEESEKLKHGGEHKSTLEMGS 184
            M   Q+AKA+A E+LA+NYALKLDV+KQ+E FEIARR YFD+KR SNA+Y MAFT ++KRSK ENT+YL+FF+RK AAEN Y RC LE+ EESEKLKHGG HKS  E  S
Sbjct:   94 MKCYQDAKARAMESLAQNYALKLDVVKQIEEFEIARREYFDNKRGSNAIYLMAFTEILKRSKAENTQYLEFFNRKVAAENTYVRCILEMIEESEKLKHGGAHKSPCERTS 203
The following BLAST results are available for this feature:
BLAST of NO28G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855566.15.400e-3269.09hypothetical protein NGA_2012800, partial [Nannoch... [more]
EWM20920.15.400e-3269.09hypothetical protein Naga_100061g18 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00720.1NO28G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100061g18gene9492Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00720.1NO28G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00720 ID=NO28G00720|Name=NO28G00720|organism=Nannochloropsis oceanica|type=gene|length=968bp
ATGCCTATCCTGTCTGCCACTTTCCTTACCTTGTTCAGCTCCCTCTTATC
TTTGCCGCACATCACGCCCCGAGAAATCTCCTCTGCCTTGGCGCCGgtga
ggtgtctgcctgccttacccctttatattcttacttgctgataggaatac
attgaagctgttggtatttgtcgtcgcgtagactgctcgtctctctcact
ttgtctcaccgtgcgctctatcctatccgctgcatgcccccggatttcgc
agcagtgctccgcactgagtgcctgtacctgcctgcatcctggtgcataa
gccacctccttatctttcttattctcttccaatatttcaccaccctcccc
tcccgcgccactgaccagaccaccaaatcgacgaatttcggcatgtacgc
tcagcaggaggacgagaccactagcccaatgacctatcgcagggtggtag
cccgccacgacgaagcagaggaaaacaaagccattctttaacagCTAGAG
CAGCAAGCTAAAGTTTTGCGGGTTCGAGGCAGCGAGCATCCCCTTAGTGG
GGCGGTGACTGCCGCAGCCACTGCTACTGCTAGTACTGCTGCTACCGTGA
CCACCTCGCATTTCAAAATGGACAGCCAGCAAGAGGCCAAAGCTCAAGCG
GCTGAGGCTCTGGCAAAAAACTACGCATTGAAATTGGATGTGATGAAGCA
GCTTGAGAATTTTGAAATCGCACGAAGAATGTACTTCGATCACAAGCGCG
AGTCGAATGCTATGTATTGGATGGCGTTTACCCTTCTCATGAAACGCAGC
AAGATTGAAAATACGCGTTATCTCGATTTCTTTTCCCGCAAATTTGCCGC
TGAAAATATGTACGCACGATGTTTCTTGGAGATAAAAGAAGAGTCCGAAA
AGCTCAAGCATGGGGGAGAGCATAAATCGACTCTAGAGATGGGCAGTGAA
AAAGGATTTACTCGATGA
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protein sequence of NO28G00720.1

>NO28G00720.1-protein ID=NO28G00720.1-protein|Name=NO28G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MPILSATFLTLFSSLLSLPHITPREISSALAPLEQQAKVLRVRGSEHPLS
GAVTAAATATASTAATVTTSHFKMDSQQEAKAQAAEALAKNYALKLDVMK
QLENFEIARRMYFDHKRESNAMYWMAFTLLMKRSKIENTRYLDFFSRKFA
AENMYARCFLEIKEESEKLKHGGEHKSTLEMGSEKGFTR*
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Synonyms
Publications