NO28G00720.1, NO28G00720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00720.1
Unique NameNO28G00720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length570
Alignment locationchr28:246504..247471 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:246504..247471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00720.1 vs.
Match: EWM20920.1 (hypothetical protein Naga_100061g18 [Nannochloropsis gaditana])

HSP 1 Score: 146.4 bits (368), Expect = 9.300e-32
Identity = 76/110 (69.09%), Postives = 90/110 (81.82%), Query Frame = 0 
Query:   74 MDSQQEAKAQAAEALAKNYALKLDVMKQLENFEIARRMYFDHKRESNAMYWMAFTLLMKRSKIENTRYLDFFSRKFAAENMYARCFLEIKEESEKLKHGGEHKSTLEMGS 184
            M   Q+AKA+A E+LA+NYALKLDV+KQ+E FEIARR YFD+KR SNA+Y MAFT ++KRSK ENT+YL+FF+RK AAEN Y RC LE+ EESEKLKHGG HKS  E  S
Sbjct:   94 MKCYQDAKARAMESLAQNYALKLDVVKQIEEFEIARREYFDNKRGSNAIYLMAFTEILKRSKAENTQYLEFFNRKVAAENTYVRCILEMIEESEKLKHGGAHKSPCERTS 203
The following BLAST results are available for this feature:
BLAST of NO28G00720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20920.19.300e-3269.09hypothetical protein Naga_100061g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00720NO28G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00720.1NO28G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00720.1.cds1NO28G00720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00720.1.cds2NO28G00720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00720.1 ID=NO28G00720.1|Name=NO28G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=570bp
ATGCCTATCCTGTCTGCCACTTTCCTTACCTTGTTCAGCTCCCTCTTATC
TTTGCCGCACATCACGCCCCGAGAAATCTCCTCTGCCTTGGCGCCGCTAG
AGCAGCAAGCTAAAGTTTTGCGGGTTCGAGGCAGCGAGCATCCCCTTAGT
GGGGCGGTGACTGCCGCAGCCACTGCTACTGCTAGTACTGCTGCTACCGT
GACCACCTCGCATTTCAAAATGGACAGCCAGCAAGAGGCCAAAGCTCAAG
CGGCTGAGGCTCTGGCAAAAAACTACGCATTGAAATTGGATGTGATGAAG
CAGCTTGAGAATTTTGAAATCGCACGAAGAATGTACTTCGATCACAAGCG
CGAGTCGAATGCTATGTATTGGATGGCGTTTACCCTTCTCATGAAACGCA
GCAAGATTGAAAATACGCGTTATCTCGATTTCTTTTCCCGCAAATTTGCC
GCTGAAAATATGTACGCACGATGTTTCTTGGAGATAAAAGAAGAGTCCGA
AAAGCTCAAGCATGGGGGAGAGCATAAATCGACTCTAGAGATGGGCAGTG
AAAAAGGATTTACTCGATGA
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protein sequence of NO28G00720.1

>NO28G00720.1-protein ID=NO28G00720.1-protein|Name=NO28G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MPILSATFLTLFSSLLSLPHITPREISSALAPLEQQAKVLRVRGSEHPLS
GAVTAAATATASTAATVTTSHFKMDSQQEAKAQAAEALAKNYALKLDVMK
QLENFEIARRMYFDHKRESNAMYWMAFTLLMKRSKIENTRYLDFFSRKFA
AENMYARCFLEIKEESEKLKHGGEHKSTLEMGSEKGFTR*
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mRNA from alignment at chr28:246504..247471+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00720.1 ID=NO28G00720.1|Name=NO28G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=968bp|location=Sequence derived from alignment at chr28:246504..247471+ (Nannochloropsis oceanica)
ATGCCTATCCTGTCTGCCACTTTCCTTACCTTGTTCAGCTCCCTCTTATC
TTTGCCGCACATCACGCCCCGAGAAATCTCCTCTGCCTTGGCGCCGGTGA
GGTGTCTGCCTGCCTTACCCCTTTATATTCTTACTTGCTGATAGGAATAC
ATTGAAGCTGTTGGTATTTGTCGTCGCGTAGACTGCTCGTCTCTCTCACT
TTGTCTCACCGTGCGCTCTATCCTATCCGCTGCATGCCCCCGGATTTCGC
AGCAGTGCTCCGCACTGAGTGCCTGTACCTGCCTGCATCCTGGTGCATAA
GCCACCTCCTTATCTTTCTTATTCTCTTCCAATATTTCACCACCCTCCCC
TCCCGCGCCACTGACCAGACCACCAAATCGACGAATTTCGGCATGTACGC
TCAGCAGGAGGACGAGACCACTAGCCCAATGACCTATCGCAGGGTGGTAG
CCCGCCACGACGAAGCAGAGGAAAACAAAGCCATTCTTTAACAGCTAGAG
CAGCAAGCTAAAGTTTTGCGGGTTCGAGGCAGCGAGCATCCCCTTAGTGG
GGCGGTGACTGCCGCAGCCACTGCTACTGCTAGTACTGCTGCTACCGTGA
CCACCTCGCATTTCAAAATGGACAGCCAGCAAGAGGCCAAAGCTCAAGCG
GCTGAGGCTCTGGCAAAAAACTACGCATTGAAATTGGATGTGATGAAGCA
GCTTGAGAATTTTGAAATCGCACGAAGAATGTACTTCGATCACAAGCGCG
AGTCGAATGCTATGTATTGGATGGCGTTTACCCTTCTCATGAAACGCAGC
AAGATTGAAAATACGCGTTATCTCGATTTCTTTTCCCGCAAATTTGCCGC
TGAAAATATGTACGCACGATGTTTCTTGGAGATAAAAGAAGAGTCCGAAA
AGCTCAAGCATGGGGGAGAGCATAAATCGACTCTAGAGATGGGCAGTGAA
AAAGGATTTACTCGATGA
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Coding sequence (CDS) from alignment at chr28:246504..247471+

>NO28G00720.1 ID=NO28G00720.1|Name=NO28G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at chr28:246504..247471+ (Nannochloropsis oceanica)
ATGCCTATCCTGTCTGCCACTTTCCTTACCTTGTTCAGCTCCCTCTTATC
TTTGCCGCACATCACGCCCCGAGAAATCTCCTCTGCCTTGGCGCCGCTAG
AGCAGCAAGCTAAAGTTTTGCGGGTTCGAGGCAGCGAGCATCCCCTTAGT
GGGGCGGTGACTGCCGCAGCCACTGCTACTGCTAGTACTGCTGCTACCGT
GACCACCTCGCATTTCAAAATGGACAGCCAGCAAGAGGCCAAAGCTCAAG
CGGCTGAGGCTCTGGCAAAAAACTACGCATTGAAATTGGATGTGATGAAG
CAGCTTGAGAATTTTGAAATCGCACGAAGAATGTACTTCGATCACAAGCG
CGAGTCGAATGCTATGTATTGGATGGCGTTTACCCTTCTCATGAAACGCA
GCAAGATTGAAAATACGCGTTATCTCGATTTCTTTTCCCGCAAATTTGCC
GCTGAAAATATGTACGCACGATGTTTCTTGGAGATAAAAGAAGAGTCCGA
AAAGCTCAAGCATGGGGGAGAGCATAAATCGACTCTAGAGATGGGCAGTG
AAAAAGGATTTACTCGATGA
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Synonyms
Publications