NO28G00690, NO28G00690 (gene) Nannochloropsis oceanica

Overview
NameNO28G00690
Unique NameNO28G00690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2378
Alignment locationchr28:236410..238787 +

Link to JBrowse

Properties
Property NameValue
DescriptionRho gtpase activating protein 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:236410..238787 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
Homology
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BLAST of NO28G00690 vs. NCBI_GenBank
Match: EWM20923.1 (rho gtpase activating protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 293.9 bits (751), Expect = 1.400e-75
Identity = 264/668 (39.52%), Postives = 335/668 (50.15%), Query Frame = 0 
Query:  119 RVRDVVALKETTASAVVRGLVEGEMPCVSNEVVARYVLVMMYPIREEDGSLTHILRTLRGEEKPLEVVEKALEEAEGGMGDKXXXXXEWEREERVCDIAL-DGEQSIRASESVPAPSSPTVSLGTNRKDSTARTLPTPKAKAKVEC---KGAFTRTQLLDEGLLFWLLKDLRGPPLEFEGYVSGAETSDDEV----PSSSFLSPSSSFPPSFDVVGPVFYSGYLLKQSSRDPCLWRRRWCVLGENKIWYTKVKHREGRAGGWEGGRVGGGRRGKVAFLSLVGLQVLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPFGIELHTAHGVQVFRAAERREQAGWVDAIRRRVVLSEENEWMAMAELVVGEEERARGRRYERCVEQVW---KEGGRGEVKDED----EEENEGSEDLVGGKDGKEEMDFEEDSPAKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMREGGR-GLGEKLAFVLAVQDYRELCRLESDPLLAPPERKWAVAQAVYDEFL-------------RGAGGKGGREE--------EVAGV------LEEHAARLRARREG----RGA--RGGMDGGGKGPGTSKPLDVPRLLRRQGKG-SLXXXXXXXXXDLKEIDGSTG-PLPCPPKELFDDVI 736
            ++RDVVAL  TTA  ++R L+E E+P VS+  +AR+ LVM+YP RE DGSLTH++RTL   E+P+++V   L E E           +  R+E V  I + D       S    AP         N +      +   K +  +     + AFTR QLLDE LL W+LKD  GPPL+F GY+SG E SDDE     P++S+ S  + +            SGYLLK+SSRDPCLWRRRWCVLGE+K WY K KHR                RGK AF++L+G+QVL+                                   P G+E+ TA  V VFRA  R +QA WV A+RR V L+ ENEW+AMAELVVGEEE+AR RR E  VE+ W    E GR   K E+     +E   S ++  G  G EE   E                      XXXXXXXXXXXXXXXXXXXX        + ++G R  L E L F +AVQ+YRE+CRL   P+LA   + WA AQAVYD FL             RGA G   +EE        E AG       L E+AA  R +R G    RGA  +G  D    G   +K   +PRLL + G   +           L+  +   G  LP PPKELFD+ +
Sbjct:   54 QMRDVVALAGTTAKTIIRTLIESEIPAVSDRDIARFALVMVYPTREVDGSLTHLMRTLNPHERPIKLVNSMLVEME--------EMSKGTRKEGVRAIGMADSTGGCPDSSDEGAPGG---GREANYETQYGPQIGRDKGEGLIRVMSPRTAFTREQLLDEHLLSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGW-------SKPGLSGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRR-------------SMRGKAAFIALMGMQVLD--------------------LECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEEEKARERRIEGVVERAWAACTERGRDNWKFEEGVTKGKECNASLNVEMGVAGAEERHPETRHVPSARLSVERESRGMVKSRXXXXXXXXXXXXXXXXXXXXEGKVERDRREKDGRRMELSELLGFAIAVQEYREVCRLGDGPVLASSLKMWAKAQAVYDAFLRRWVRLLHDLERERGATGGLLKEEGRDGSVLPEWAGAIYIERQLLEYAACERRQRGGASLSRGAARQGKKDDKRAGTAKTKLRALPRLLNKHGDSFAADPINTAPSVSLECEEAELGRSLPPPPKELFDETL 670
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BLAST of NO28G00690 vs. NCBI_GenBank
Match: CBN75505.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 78.2 bits (191), Expect = 1.200e-10
Identity = 61/216 (28.24%), Postives = 92/216 (42.59%), Query Frame = 0 
Query:  280 WLLKDLRGP---PLEFEGYVSGAETSDDEVPSSSFLSPSSSFPPSFDVVGPVFYSGYLLKQSSRDPCLWRRRWCVLGENKIWYTKVKHREGRAGGWEGGRVGGGRRGKVAFLSLVGLQVLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPFGIELHTAHGVQVFRAAERREQAGWVDAIRRRVVLSEENEWMAMAELVVGEEERARGRR 493
            W+ ++   P   P E +  VSG++TS+DE  +                +G   Y GYL K+S  DP LWRRRWC+L ++++W  + K  +       G R GGGR    + L+L                                              ELH+ + V  FRA  R +Q  WV  ++R    + E+ +M++AE +V +EE AR RR
Sbjct:  449 WIYRERTAPALDPDELQVEVSGSDTSEDERRAGWI---------DLRGLGQGHYCGYLQKKSRSDPNLWRRRWCILADDRLWLLRSKSEQ------SGRRRGGGRSHSFS-LALAPSHC----------------------------------------FELHSQNRVHTFRAESRAKQVAWVGTLQRHARQAAEDSYMSVAEHMVCDEEYARCRR 608
The following BLAST results are available for this feature:
BLAST of NO28G00690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20923.11.400e-7539.52rho gtpase activating protein 2 [Nannochloropsis g... [more]
CBN75505.11.200e-1028.24conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004867NSK004867Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00690.1NO28G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|274293gene_9171Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100061g22gene9488Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00690.1NO28G00690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00690 ID=NO28G00690|Name=NO28G00690|organism=Nannochloropsis oceanica|type=gene|length=2378bp
ACAGCCATGTCACAACTTCCTCGCTTATCCTTTCTGTAAGTCGGCTATAT
CCGCAAAGGGAGCGCTCTAGCAGCCAGAGAATTGACGATAATAATCAGCT
CCATCACATGTCGGCCGCCGCTTTCTCCTCCCCACCCTCCTCCCTGCCGC
CCACGTCACGCGAGCGACAAAGCCCACGCCCAACACGACCCCCACCATTG
CACCGCTTGCTTCTACGCGTTACATGCGTGGAGCTGGGCTCAAGCGGTAG
CGGCAACCACGATGACCATTCCCTCAACGACTTCGAGCACGACGAACCAC
CCCCCCTTCCTCCGCCGCCGCCTACCTCCCGTTCCTCCACCCCGCCTAGC
ACCCCGCGCTCCTCATCCTGGTCCTCCCGCACTTCCTCCGCTTTCTCCCA
GCAACATCAGCAACATCGACGTCAACGCACGAGCAGCCGAGAAAGACAGG
GAGGAGACCAAAGGGTCCGAGATGTAGTGGCCTTGAAAGAAACGACTGCT
AGTGCGGTTGTCCGTGGACTAGTTGAGGGGGAGATGCCCTGTGTCAGCAA
TGAGGTGGTGGCGAGGTATGTACTTGTAATGATGTATCCAATCAGGGAGG
AGGATGGGAGTTTGACGCATATCCTGCGTACATTGAGGGGGGAGGAGAAA
CCGTTGGAAGTCGTGGAGAAAGCGTTGGAGGAGGCGGAGGGAGGAATGGG
GGACAAGGACGAAGACGAGGGCGAGTGGGAAAGGGAAGAGAGAGTATGCG
ATATTGCCCTGGATGGTGAGCAAAGCATCCGTGCTTCGGAATCAGTTCCT
GCTCCGTCCTCTCCAACTGTCTCCCTTGGCACTAATCGAAAAGACAGCAC
AGCTCGGACACTGCCAACTCCAAAAGCAAAAGCAAAAGTGGAATGTAAAG
GAGCCTTCACCCGCACTCAACTTCTCGACGAAGGCCTCCTCTTCTGGCTC
CTAAAGGACCTCCGTGGCCCGCCCTTGGAGTTTGAGGGCTACGTGAGTGG
CGCCGAGACCTCGGACGACGAAGTGCCCTCCTCTTCCTTCCTCTCTCCCT
CGTCCTCCTTCCCTCCTTCCTTTGATGTGGTGGGTCCTGTGTTTTATTCT
GGATATTTGTTGAAGCAAAGCTCGCGGGATCCCTGTCTGTGGCGACGACG
ATGGTGTGTCTTAGGGGAGAACAAGATCTGGTACACCAAGGTAAAACATC
GAGAAGGGAGGGCGGGGGGTTGGGAAGGCGGAAGGGTAGGAGGAGGAAGA
AGGGGAAAGGTGGCGTTTTTGTCGCTGGTTGGACTGCAGGTGTTGGAATC
GAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTATAGTGTTCTCA
CAACAGGAGCAGGCGCAGAAGCAGGAGGAGCAGCTGGAGCAGCAGCAGTA
GTACCGTTTGGGATAGAGCTTCACACGGCCCATGGCGTGCAAGTGTTCAG
GGCTGCTGAAAGGAGGGAGCAGGCGGGGTGGGTGGATGCAATTAGGAGGA
GGGTGGTCCTAAGTGAGGAGAATGAGTGGATGGCCATGGCGGAGCTGGTG
GTGGGGGAGGAGGAGAGGGCGAGGGGTAGGAGATATGAGAGGTGTGTAGA
ACAGGTCTGGAAAGAGGGAGGGAGGGGGGAGGTAAAAGACGAGGACGAGG
AAGAAAATGAAGGGAGTGAGGATTTGGTGGGGGGAAAGGATGGGAAGGAA
GAAATGGATTTCGAGGAGGACTCTCCAGCGAAAGGGGCACAGGCGAGGAA
GAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAGACA
GCAGGAGCATCAGCAAAAGCAGGAGGCAGGCAAGGATTCGCCGGCTCCTG
TGCGGAGGAGGAGGAAAAATGAGGGAAGGAGGGAGGGGTCTAGGCGAGAA
GCTGGCGTTCGTGTTGGCGGTGCAGGACTACAGGGAATTGTGTCGGTTGG
AAAGCGATCCTCTCCTGGCTCCCCCGGAGAGGAAATGGGCAGTGGCACAG
GCTGTCTACGATGAATTTTTAAGGGGAGCTGGGGGAAAGGGAGGAAGGGA
GGAGGAAGTGGCGGGGGTGTTGGAGGAGCATGCGGCAAGGCTGCGGGCGC
GGAGAGAGGGGAGGGGGGCGAGGGGAGGGATGGACGGAGGAGGGAAGGGT
CCAGGCACGAGCAAGCCGCTGGATGTACCTCGTTTGTTGAGAAGACAAGG
GAAGGGATCTTTGTCATCCTCCTCCCCCCCTCCCCCCCCCGATCTGAAGG
AGATCGACGGGAGCACAGGGCCGTTGCCTTGTCCGCCGAAAGAGCTGTTT
GATGACGTCATTCTGAGCTGGGGGGGGGCACAGCTCAACGACAGGAAGAA
GGGAGGGACGAAAGGAACACTAGGTTGA
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protein sequence of NO28G00690.1

>NO28G00690.1-protein ID=NO28G00690.1-protein|Name=NO28G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=757bp
MSAAAFSSPPSSLPPTSRERQSPRPTRPPPLHRLLLRVTCVELGSSGSGN
HDDHSLNDFEHDEPPPLPPPPPTSRSSTPPSTPRSSSWSSRTSSAFSQQH
QQHRRQRTSSRERQGGDQRVRDVVALKETTASAVVRGLVEGEMPCVSNEV
VARYVLVMMYPIREEDGSLTHILRTLRGEEKPLEVVEKALEEAEGGMGDK
DEDEGEWEREERVCDIALDGEQSIRASESVPAPSSPTVSLGTNRKDSTAR
TLPTPKAKAKVECKGAFTRTQLLDEGLLFWLLKDLRGPPLEFEGYVSGAE
TSDDEVPSSSFLSPSSSFPPSFDVVGPVFYSGYLLKQSSRDPCLWRRRWC
VLGENKIWYTKVKHREGRAGGWEGGRVGGGRRGKVAFLSLVGLQVLESSR
SSSSSSSSSSYSVLTTGAGAEAGGAAGAAAVVPFGIELHTAHGVQVFRAA
ERREQAGWVDAIRRRVVLSEENEWMAMAELVVGEEERARGRRYERCVEQV
WKEGGRGEVKDEDEEENEGSEDLVGGKDGKEEMDFEEDSPAKGAQARKKG
SSSSSSSSSSSSPDSRSISKSRRQARIRRLLCGGGGKMREGGRGLGEKLA
FVLAVQDYRELCRLESDPLLAPPERKWAVAQAVYDEFLRGAGGKGGREEE
VAGVLEEHAARLRARREGRGARGGMDGGGKGPGTSKPLDVPRLLRRQGKG
SLSSSSPPPPPDLKEIDGSTGPLPCPPKELFDDVILSWGGAQLNDRKKGG
TKGTLG*
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Synonyms
Publications