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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr28 | genome | chr28:236410..238787 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00690.1 vs.
Match: EWM20923.1 (rho gtpase activating protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 295.8 bits (756), Expect = 3.800e-76 Identity = 254/678 (37.46%), Postives = 332/678 (48.97%), Query Frame = 0
Query: 119 RVRDVVALKETTASAVVRGLVEGEMPCVSNEVVARYVLVMMYPIREEDGSLTHILRTLRGEEKPLEVVEKALEEAEGGMGDKDEDEGEWEREERVCDIAL-DGEQSIRASESVPAPSSPTVSLGTNRKDSTARTLPTPKAKAKVEC---KGAFTRTQLLDEGLLFWLLKDLRGPPLEFEGYVSGAETSDDEV----PSSSFLSPSSSFPPSFDVVGPVFYSGYLLKQSSRDPCLWRRRWCVLGENKIWYTKVKHREGRAGGWEGGRVGGGRRGKVAFLSLVGLQVLESSRSSSSSSSSSSYSVLTTGAGAEAGGAAGAAAVVPFGIELHTAHGVQVFRAAERREQAGWVDAIRRRVVLSEENEWMAMAELVVGEEERARGRRYERCVEQVW---KEGGRGEVKDEDEEENEGSEDLVGGKDGKEEMDFEEDSPAKGAQARKKGSSSSSSSSSSSSPDSRSISKSRRQARIRRL---LCGGGGKMREG----------GR--GLGEKLAFVLAVQDYRELCRLESDPLLAPPERKWAVAQAVYDEFLR--------------GAGGKGGREEEVAGVLEEHAARLRARRE-------------------GRGARGGMDGGGKGPGTSKPLDVPRLLRRQGKG-SLSSSSPPPPPDLKEIDGSTG-PLPCPPKELFDDVI 736
++RDVVAL TTA ++R L+E E+P VS+ +AR+ LVM+YP RE DGSLTH++RTL E+P+++V L E E + + R+E V I + D S AP + N + + K + + + AFTR QLLDE LL W+LKD GPPL+F GY+SG E SDDE P++S+ S + + SGYLLK+SSRDPCLWRRRWCVLGE+K WY K KHR RGK AF++L+G+QVL+ L G G + V P G+E+ TA V VFRA R +QA WV A+RR V L+ ENEW+AMAELVVGEEE+AR RR E VE+ W E GR K E E + GK+ ++ E GA+ R + S+ S +SR + KSR + +R L G GG EG GR L E L F +AVQ+YRE+CRL P+LA + WA AQAVYD FLR GG E VL E A + R+ G +G D G +K +PRLL + G + + P L+ + G LP PPKELFD+ +
Sbjct: 54 QMRDVVALAGTTAKTIIRTLIESEIPAVSDRDIARFALVMVYPTREVDGSLTHLMRTLNPHERPIKLVNSMLVEME--------EMSKGTRKEGVRAIGMADSTGGCPDSSDEGAPGGGREA---NYETQYGPQIGRDKGEGLIRVMSPRTAFTREQLLDEHLLSWVLKDTEGPPLDFPGYLSGPEASDDETSPTCPAASWFSDQAGWSKPG-------LSGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSM-------------RGKAAFIALMGMQVLD----------------LECGEGE----SRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEEEKARERRIEGVVERAWAACTERGRDNWKFE--------EGVTKGKECNASLNVE--MGVAGAEERHPETRHVPSARLSVERESRGMVKSRARELLRAKGSNLLGKGGINAEGKVERDRREKDGRRMELSELLGFAIAVQEYREVCRLGDGPVLASSLKMWAKAQAVYDAFLRRWVRLLHDLERERGATGGLLKEEGRDGSVLPEWAGAIYIERQLLEYAACERRQRGGASLSRGAARQGKKDDKRAGTAKTKLRALPRLLNKHGDSFAADPINTAPSVSLECEEAELGRSLPPPPKELFDETL 670
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00690.1 ID=NO28G00690.1|Name=NO28G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2378bp ACAGCCATGTCACAACTTCCTCGCTTATCCTTTCTGTAAGTCGGCTATAT CCGCAAAGGGAGCGCTCTAGCAGCCAGAGAATTGACGATAATAATCAGCT CCATCACATGTCGGCCGCCGCTTTCTCCTCCCCACCCTCCTCCCTGCCGC CCACGTCACGCGAGCGACAAAGCCCACGCCCAACACGACCCCCACCATTG CACCGCTTGCTTCTACGCGTTACATGCGTGGAGCTGGGCTCAAGCGGTAG CGGCAACCACGATGACCATTCCCTCAACGACTTCGAGCACGACGAACCAC CCCCCCTTCCTCCGCCGCCGCCTACCTCCCGTTCCTCCACCCCGCCTAGC ACCCCGCGCTCCTCATCCTGGTCCTCCCGCACTTCCTCCGCTTTCTCCCA GCAACATCAGCAACATCGACGTCAACGCACGAGCAGCCGAGAAAGACAGG GAGGAGACCAAAGGGTCCGAGATGTAGTGGCCTTGAAAGAAACGACTGCT AGTGCGGTTGTCCGTGGACTAGTTGAGGGGGAGATGCCCTGTGTCAGCAA TGAGGTGGTGGCGAGGTATGTACTTGTAATGATGTATCCAATCAGGGAGG AGGATGGGAGTTTGACGCATATCCTGCGTACATTGAGGGGGGAGGAGAAA CCGTTGGAAGTCGTGGAGAAAGCGTTGGAGGAGGCGGAGGGAGGAATGGG GGACAAGGACGAAGACGAGGGCGAGTGGGAAAGGGAAGAGAGAGTATGCG ATATTGCCCTGGATGGTGAGCAAAGCATCCGTGCTTCGGAATCAGTTCCT GCTCCGTCCTCTCCAACTGTCTCCCTTGGCACTAATCGAAAAGACAGCAC AGCTCGGACACTGCCAACTCCAAAAGCAAAAGCAAAAGTGGAATGTAAAG GAGCCTTCACCCGCACTCAACTTCTCGACGAAGGCCTCCTCTTCTGGCTC CTAAAGGACCTCCGTGGCCCGCCCTTGGAGTTTGAGGGCTACGTGAGTGG CGCCGAGACCTCGGACGACGAAGTGCCCTCCTCTTCCTTCCTCTCTCCCT CGTCCTCCTTCCCTCCTTCCTTTGATGTGGTGGGTCCTGTGTTTTATTCT GGATATTTGTTGAAGCAAAGCTCGCGGGATCCCTGTCTGTGGCGACGACG ATGGTGTGTCTTAGGGGAGAACAAGATCTGGTACACCAAGGTAAAACATC GAGAAGGGAGGGCGGGGGGTTGGGAAGGCGGAAGGGTAGGAGGAGGAAGA AGGGGAAAGGTGGCGTTTTTGTCGCTGGTTGGACTGCAGGTGTTGGAATC GAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTATAGTGTTCTCA CAACAGGAGCAGGCGCAGAAGCAGGAGGAGCAGCTGGAGCAGCAGCAGTA GTACCGTTTGGGATAGAGCTTCACACGGCCCATGGCGTGCAAGTGTTCAG GGCTGCTGAAAGGAGGGAGCAGGCGGGGTGGGTGGATGCAATTAGGAGGA GGGTGGTCCTAAGTGAGGAGAATGAGTGGATGGCCATGGCGGAGCTGGTG GTGGGGGAGGAGGAGAGGGCGAGGGGTAGGAGATATGAGAGGTGTGTAGA ACAGGTCTGGAAAGAGGGAGGGAGGGGGGAGGTAAAAGACGAGGACGAGG AAGAAAATGAAGGGAGTGAGGATTTGGTGGGGGGAAAGGATGGGAAGGAA GAAATGGATTTCGAGGAGGACTCTCCAGCGAAAGGGGCACAGGCGAGGAA GAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAGACA GCAGGAGCATCAGCAAAAGCAGGAGGCAGGCAAGGATTCGCCGGCTCCTG TGCGGAGGAGGAGGAAAAATGAGGGAAGGAGGGAGGGGTCTAGGCGAGAA GCTGGCGTTCGTGTTGGCGGTGCAGGACTACAGGGAATTGTGTCGGTTGG AAAGCGATCCTCTCCTGGCTCCCCCGGAGAGGAAATGGGCAGTGGCACAG GCTGTCTACGATGAATTTTTAAGGGGAGCTGGGGGAAAGGGAGGAAGGGA GGAGGAAGTGGCGGGGGTGTTGGAGGAGCATGCGGCAAGGCTGCGGGCGC GGAGAGAGGGGAGGGGGGCGAGGGGAGGGATGGACGGAGGAGGGAAGGGT CCAGGCACGAGCAAGCCGCTGGATGTACCTCGTTTGTTGAGAAGACAAGG GAAGGGATCTTTGTCATCCTCCTCCCCCCCTCCCCCCCCCGATCTGAAGG AGATCGACGGGAGCACAGGGCCGTTGCCTTGTCCGCCGAAAGAGCTGTTT GATGACGTCATTCTGAGCTGGGGGGGGGCACAGCTCAACGACAGGAAGAA GGGAGGGACGAAAGGAACACTAGGTTGA back to topprotein sequence of NO28G00690.1 >NO28G00690.1-protein ID=NO28G00690.1-protein|Name=NO28G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=757bp MSAAAFSSPPSSLPPTSRERQSPRPTRPPPLHRLLLRVTCVELGSSGSGN HDDHSLNDFEHDEPPPLPPPPPTSRSSTPPSTPRSSSWSSRTSSAFSQQH QQHRRQRTSSRERQGGDQRVRDVVALKETTASAVVRGLVEGEMPCVSNEV VARYVLVMMYPIREEDGSLTHILRTLRGEEKPLEVVEKALEEAEGGMGDK DEDEGEWEREERVCDIALDGEQSIRASESVPAPSSPTVSLGTNRKDSTAR TLPTPKAKAKVECKGAFTRTQLLDEGLLFWLLKDLRGPPLEFEGYVSGAE TSDDEVPSSSFLSPSSSFPPSFDVVGPVFYSGYLLKQSSRDPCLWRRRWC VLGENKIWYTKVKHREGRAGGWEGGRVGGGRRGKVAFLSLVGLQVLESSR SSSSSSSSSSYSVLTTGAGAEAGGAAGAAAVVPFGIELHTAHGVQVFRAA ERREQAGWVDAIRRRVVLSEENEWMAMAELVVGEEERARGRRYERCVEQV WKEGGRGEVKDEDEEENEGSEDLVGGKDGKEEMDFEEDSPAKGAQARKKG SSSSSSSSSSSSPDSRSISKSRRQARIRRLLCGGGGKMREGGRGLGEKLA FVLAVQDYRELCRLESDPLLAPPERKWAVAQAVYDEFLRGAGGKGGREEE VAGVLEEHAARLRARREGRGARGGMDGGGKGPGTSKPLDVPRLLRRQGKG SLSSSSPPPPPDLKEIDGSTGPLPCPPKELFDDVILSWGGAQLNDRKKGG TKGTLG* back to topmRNA from alignment at chr28:236410..238787+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00690.1 ID=NO28G00690.1|Name=NO28G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2378bp|location=Sequence derived from alignment at chr28:236410..238787+ (Nannochloropsis oceanica) ACAGCCATGTCACAACTTCCTCGCTTATCCTTTCTGTAAGTCGGCTATAT
CCGCAAAGGGAGCGCTCTAGCAGCCAGAGAATTGACGATAATAATCAGCT
CCATCACATGTCGGCCGCCGCTTTCTCCTCCCCACCCTCCTCCCTGCCGC
CCACGTCACGCGAGCGACAAAGCCCACGCCCAACACGACCCCCACCATTG
CACCGCTTGCTTCTACGCGTTACATGCGTGGAGCTGGGCTCAAGCGGTAG
CGGCAACCACGATGACCATTCCCTCAACGACTTCGAGCACGACGAACCAC
CCCCCCTTCCTCCGCCGCCGCCTACCTCCCGTTCCTCCACCCCGCCTAGC
ACCCCGCGCTCCTCATCCTGGTCCTCCCGCACTTCCTCCGCTTTCTCCCA
GCAACATCAGCAACATCGACGTCAACGCACGAGCAGCCGAGAAAGACAGG
GAGGAGACCAAAGGGTCCGAGATGTAGTGGCCTTGAAAGAAACGACTGCT
AGTGCGGTTGTCCGTGGACTAGTTGAGGGGGAGATGCCCTGTGTCAGCAA
TGAGGTGGTGGCGAGGTATGTACTTGTAATGATGTATCCAATCAGGGAGG
AGGATGGGAGTTTGACGCATATCCTGCGTACATTGAGGGGGGAGGAGAAA
CCGTTGGAAGTCGTGGAGAAAGCGTTGGAGGAGGCGGAGGGAGGAATGGG
GGACAAGGACGAAGACGAGGGCGAGTGGGAAAGGGAAGAGAGAGTATGCG
ATATTGCCCTGGATGGTGAGCAAAGCATCCGTGCTTCGGAATCAGTTCCT
GCTCCGTCCTCTCCAACTGTCTCCCTTGGCACTAATCGAAAAGACAGCAC
AGCTCGGACACTGCCAACTCCAAAAGCAAAAGCAAAAGTGGAATGTAAAG
GAGCCTTCACCCGCACTCAACTTCTCGACGAAGGCCTCCTCTTCTGGCTC
CTAAAGGACCTCCGTGGCCCGCCCTTGGAGTTTGAGGGCTACGTGAGTGG
CGCCGAGACCTCGGACGACGAAGTGCCCTCCTCTTCCTTCCTCTCTCCCT
CGTCCTCCTTCCCTCCTTCCTTTGATGTGGTGGGTCCTGTGTTTTATTCT
GGATATTTGTTGAAGCAAAGCTCGCGGGATCCCTGTCTGTGGCGACGACG
ATGGTGTGTCTTAGGGGAGAACAAGATCTGGTACACCAAGGTAAAACATC
GAGAAGGGAGGGCGGGGGGTTGGGAAGGCGGAAGGGTAGGAGGAGGAAGA
AGGGGAAAGGTGGCGTTTTTGTCGCTGGTTGGACTGCAGGTGTTGGAATC
GAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTATAGTGTTCTCA
CAACAGGAGCAGGCGCAGAAGCAGGAGGAGCAGCTGGAGCAGCAGCAGTA
GTACCGTTTGGGATAGAGCTTCACACGGCCCATGGCGTGCAAGTGTTCAG
GGCTGCTGAAAGGAGGGAGCAGGCGGGGTGGGTGGATGCAATTAGGAGGA
GGGTGGTCCTAAGTGAGGAGAATGAGTGGATGGCCATGGCGGAGCTGGTG
GTGGGGGAGGAGGAGAGGGCGAGGGGTAGGAGATATGAGAGGTGTGTAGA
ACAGGTCTGGAAAGAGGGAGGGAGGGGGGAGGTAAAAGACGAGGACGAGG
AAGAAAATGAAGGGAGTGAGGATTTGGTGGGGGGAAAGGATGGGAAGGAA
GAAATGGATTTCGAGGAGGACTCTCCAGCGAAAGGGGCACAGGCGAGGAA
GAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAGACA
GCAGGAGCATCAGCAAAAGCAGGAGGCAGGCAAGGATTCGCCGGCTCCTG
TGCGGAGGAGGAGGAAAAATGAGGGAAGGAGGGAGGGGTCTAGGCGAGAA
GCTGGCGTTCGTGTTGGCGGTGCAGGACTACAGGGAATTGTGTCGGTTGG
AAAGCGATCCTCTCCTGGCTCCCCCGGAGAGGAAATGGGCAGTGGCACAG
GCTGTCTACGATGAATTTTTAAGGGGAGCTGGGGGAAAGGGAGGAAGGGA
GGAGGAAGTGGCGGGGGTGTTGGAGGAGCATGCGGCAAGGCTGCGGGCGC
GGAGAGAGGGGAGGGGGGCGAGGGGAGGGATGGACGGAGGAGGGAAGGGT
CCAGGCACGAGCAAGCCGCTGGATGTACCTCGTTTGTTGAGAAGACAAGG
GAAGGGATCTTTGTCATCCTCCTCCCCCCCTCCCCCCCCCGATCTGAAGG
AGATCGACGGGAGCACAGGGCCGTTGCCTTGTCCGCCGAAAGAGCTGTTT
GATGACGTCATTCTGAGCTGGGGGGGGGCACAGCTCAACGACAGGAAGAA
GGGAGGGACGAAAGGAACACTAGGTTGA back to topCoding sequence (CDS) from alignment at chr28:236410..238787+ >NO28G00690.1 ID=NO28G00690.1|Name=NO28G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=2271bp|location=Sequence derived from alignment at chr28:236410..238787+ (Nannochloropsis oceanica) ATGTCGGCCGCCGCTTTCTCCTCCCCACCCTCCTCCCTGCCGCCCACGTC ACGCGAGCGACAAAGCCCACGCCCAACACGACCCCCACCATTGCACCGCT TGCTTCTACGCGTTACATGCGTGGAGCTGGGCTCAAGCGGTAGCGGCAAC CACGATGACCATTCCCTCAACGACTTCGAGCACGACGAACCACCCCCCCT TCCTCCGCCGCCGCCTACCTCCCGTTCCTCCACCCCGCCTAGCACCCCGC GCTCCTCATCCTGGTCCTCCCGCACTTCCTCCGCTTTCTCCCAGCAACAT CAGCAACATCGACGTCAACGCACGAGCAGCCGAGAAAGACAGGGAGGAGA CCAAAGGGTCCGAGATGTAGTGGCCTTGAAAGAAACGACTGCTAGTGCGG TTGTCCGTGGACTAGTTGAGGGGGAGATGCCCTGTGTCAGCAATGAGGTG GTGGCGAGGTATGTACTTGTAATGATGTATCCAATCAGGGAGGAGGATGG GAGTTTGACGCATATCCTGCGTACATTGAGGGGGGAGGAGAAACCGTTGG AAGTCGTGGAGAAAGCGTTGGAGGAGGCGGAGGGAGGAATGGGGGACAAG GACGAAGACGAGGGCGAGTGGGAAAGGGAAGAGAGAGTATGCGATATTGC CCTGGATGGTGAGCAAAGCATCCGTGCTTCGGAATCAGTTCCTGCTCCGT CCTCTCCAACTGTCTCCCTTGGCACTAATCGAAAAGACAGCACAGCTCGG ACACTGCCAACTCCAAAAGCAAAAGCAAAAGTGGAATGTAAAGGAGCCTT CACCCGCACTCAACTTCTCGACGAAGGCCTCCTCTTCTGGCTCCTAAAGG ACCTCCGTGGCCCGCCCTTGGAGTTTGAGGGCTACGTGAGTGGCGCCGAG ACCTCGGACGACGAAGTGCCCTCCTCTTCCTTCCTCTCTCCCTCGTCCTC CTTCCCTCCTTCCTTTGATGTGGTGGGTCCTGTGTTTTATTCTGGATATT TGTTGAAGCAAAGCTCGCGGGATCCCTGTCTGTGGCGACGACGATGGTGT GTCTTAGGGGAGAACAAGATCTGGTACACCAAGGTAAAACATCGAGAAGG GAGGGCGGGGGGTTGGGAAGGCGGAAGGGTAGGAGGAGGAAGAAGGGGAA AGGTGGCGTTTTTGTCGCTGGTTGGACTGCAGGTGTTGGAATCGAGCAGA AGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTATAGTGTTCTCACAACAGG AGCAGGCGCAGAAGCAGGAGGAGCAGCTGGAGCAGCAGCAGTAGTACCGT TTGGGATAGAGCTTCACACGGCCCATGGCGTGCAAGTGTTCAGGGCTGCT GAAAGGAGGGAGCAGGCGGGGTGGGTGGATGCAATTAGGAGGAGGGTGGT CCTAAGTGAGGAGAATGAGTGGATGGCCATGGCGGAGCTGGTGGTGGGGG AGGAGGAGAGGGCGAGGGGTAGGAGATATGAGAGGTGTGTAGAACAGGTC TGGAAAGAGGGAGGGAGGGGGGAGGTAAAAGACGAGGACGAGGAAGAAAA TGAAGGGAGTGAGGATTTGGTGGGGGGAAAGGATGGGAAGGAAGAAATGG ATTTCGAGGAGGACTCTCCAGCGAAAGGGGCACAGGCGAGGAAGAAGGGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAGACAGCAGGAG CATCAGCAAAAGCAGGAGGCAGGCAAGGATTCGCCGGCTCCTGTGCGGAG GAGGAGGAAAAATGAGGGAAGGAGGGAGGGGTCTAGGCGAGAAGCTGGCG TTCGTGTTGGCGGTGCAGGACTACAGGGAATTGTGTCGGTTGGAAAGCGA TCCTCTCCTGGCTCCCCCGGAGAGGAAATGGGCAGTGGCACAGGCTGTCT ACGATGAATTTTTAAGGGGAGCTGGGGGAAAGGGAGGAAGGGAGGAGGAA GTGGCGGGGGTGTTGGAGGAGCATGCGGCAAGGCTGCGGGCGCGGAGAGA GGGGAGGGGGGCGAGGGGAGGGATGGACGGAGGAGGGAAGGGTCCAGGCA CGAGCAAGCCGCTGGATGTACCTCGTTTGTTGAGAAGACAAGGGAAGGGA TCTTTGTCATCCTCCTCCCCCCCTCCCCCCCCCGATCTGAAGGAGATCGA CGGGAGCACAGGGCCGTTGCCTTGTCCGCCGAAAGAGCTGTTTGATGACG TCATTCTGAGCTGGGGGGGGGCACAGCTCAACGACAGGAAGAAGGGAGGG ACGAAAGGAACACTAGGTTGA back to top
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