NO28G00680, NO28G00680 (gene) Nannochloropsis oceanica

Overview
NameNO28G00680
Unique NameNO28G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2155
Alignment locationchr28:234113..236267 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:234113..236267 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00680.1NO28G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633504gene_9170Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00680.1NO28G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00680 ID=NO28G00680|Name=NO28G00680|organism=Nannochloropsis oceanica|type=gene|length=2155bp
AAAAACAGCGCGACATTTAGCAGAATAAGAGTATGCCTTCATCCTTATCC
TTTGCCGCCGCGCCCAACAGGCCCTGGTCACCAGCCTCCACCTCCTCCAA
CTCTTCGTTTGCCACCCACTGCCGCCCCCGAGGCTACATACTGGCGCCTT
CTACTAACACCACGAAAAGTGAGCAGAAGCGACATTCCGTCCGCTACACT
TCGCGATACCTGCAAGAAGCCCAACAACGCGCCATCTCCCGCTCTGCTCA
GCGATTGCATTTGCTTCGACAATCTCGGCTGCACGCGGAGAATGAGTGGG
ACAGGGAAGAATCCTCTGCTGCGGCTGCGGCTGCAGCTGCTGCACTTGAG
GCCAAAAAGGTGGCGAAAAGGGATTCAGTTGGGTCACCTATGCTTTTTCC
ATCAATAGCCCTGAAGTGTGGATGCAGTAGTGTCTTGAAGCCCCTTCCAT
CTCCTCCCTCTGGCGGCGGTGACAAGTCCAGGCCATGGACCCCGCCTCCA
TCTCCCCGCAGCCGTGAGGGTGGCGCGAGCATGACCATCCCTCCTCTCCC
TAATACTACATCCCGCAACACAACGTTCAGCGTCAATTCTCAACGATCAG
GACATTGTCATCAACATGCGCACGTCAAGACTGCAAAAGGAAGCCTTGCT
GGCGCCACCACTACTGCCAACACAACCACAAGGAGCGGCAGCTGCAGCGG
CAGCAGCAGGACTCCAATTACTCGCATTATCAAGGGTGAATGGATCCGAC
ATTCTTCAAGTCAAACTGGAGGGGAAGGACTTTATTGCCTGCTTGATGAG
GGAGGAGGAACAGTGGGGTTTCCCCAGCGACGCCGACGCCGGGGCCGAAA
AAGAGGAGATGAAGATGGAGGAGGAGGAGCAGGAGGAGCAGGAGAAGCAG
GAGCAGTAGGGGGAAGGACTATGCCCTCGTGTACTCGGGCTTGCTCGCCC
ATCGATCCTACAATTGTGGCTTGCATTTTACTGGAGGAGGAGGCCCAGCT
GCAGCAGCAGGAAGAGGAGAAGGAATGGCGGAATAACGAAAGAGTGCGGG
AGGAGGAGGATTCGCGGACGAAAAGGAATACATCAATAGAGGTCTGGCAG
CAAAATGATAAGGGAAGAGTGGAAGGGTTTGAACAGCAGAGTCAGCAGCA
GAGGCATCAGCAGGTCCGCTTTCGGTACTACTACGCCGAGAAGCCGCACC
CTTCGCCGTATCGTCGAGCAGCAGCACCACCACCACCAGCAGATGCACCA
GTGTTGCTTCCACGCAAGCAGCGAAAGCAGCACCAGCAACAGCAGGGGCG
ACATAATCATTTTGATAAGGAAGAGGAGGACGAAGACTTGACGCGCGAGC
TGTGCAGTAAACAGGACCTTGGGGAGCGGGAGGAGCAAGAGATGGGGAGG
GAAGAGAGGCGATGTTTCTCGCTTTCCTCGACACCATCGCCATCGTCTTT
TGGCTCCTCCTCCTCCGTCTCCGTCTCGTCCTCCTCCTGGAAAGACGTCA
TCCCTTTGCCGCGTGAAAATCACAATGCGAGGCGAGAGGGTCATGTTATC
CCCTTAGATGTGTCCGAGCGAGAGCAAGCGGATATCGAGGGGAAGCATGG
AGTAAAGTGCACACATATTTGGGGGGAAAAGAAAGGGAGGGAGGCACAAA
AAATGAGAGTAGCAAGGCGgtaagtgatgcgagtgtgatgatggagtgga
tgggaggtggcagacatctccggcactcccaccctcattgccgtagcctc
gcgctctgctgagtggtacatggaagaaaccgtcagtcttgtctcttaaa
ccttcctgcccagcccttctgacaggcacggatgcgatggtgtgcagttc
agacatcaccagatgtgctcactgagtctctctcacttcttacaatgtcc
ctgtagGCTGGCGGAGGAGGTAGCCAACGAGCTGGTGAAGGAAGCGAGTG
AGGAGTTGGAGGGCATCTTAAGAGGCTACGCCGAGGACGTCTTTGCCTGG
CTCTGAAAGACGAAAAGACATACAAACAAGATGTCGGGTACCTATTTGGA
AGCAAACAAAGAAGATTCACATAAGGCCATCGACAAACCTCTTAACGTAT
TTTTCGACTACTTGCTCGGGGAAATAAGTGAAATTCAAATGCATATGTGA
GAGAG
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protein sequence of NO28G00680.1

>NO28G00680.1-protein ID=NO28G00680.1-protein|Name=NO28G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp
MPSSLSFAAAPNRPWSPASTSSNSSFATHCRPRGYILAPSTNTTKSEQKR
HSVRYTSRYLQEAQQRAISRSAQRLHLLRQSRLHAENEWDREESSAAAAA
AAAALEAKKVAKRDSVGSPMLFPSIALKCGCSSVLKPLPSPPSGGGDKSR
PWTPPPSPRSREGGASMTIPPLPNTTSRNTTFSVNSQRSGHCHQHAHVKT
AKGSLAGATTTANTTTRSGSCSGSSRTPITRIIKGEWIRHSSSQTGGEGL
YCLLDEGGGTVGFPQRRRRRGRKRGDEDGGGGAGGAGEAGAVGGRTMPSC
TRACSPIDPTIVACILLEEEAQLQQQEEEKEWRNNERVREEEDSRTKRNT
SIEVWQQNDKGRVEGFEQQSQQQRHQQVRFRYYYAEKPHPSPYRRAAAPP
PPADAPVLLPRKQRKQHQQQQGRHNHFDKEEEDEDLTRELCSKQDLGERE
EQEMGREERRCFSLSSTPSPSSFGSSSSVSVSSSSWKDVIPLPRENHNAR
REGHVIPLDVSEREQADIEGKHGVKCTHIWGEKKGREAQKMRVARRLAEE
VANELVKEASEELEGILRGYAEDVFAWL*
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Synonyms
Publications