NO28G00680.1, NO28G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00680.1
Unique NameNO28G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1918
Alignment locationchr28:234113..236267 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:234113..236267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00680NO28G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00680.1NO28G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00680.1.cds1NO28G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00680.1.cds2NO28G00680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00680.1 ID=NO28G00680.1|Name=NO28G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp
AAAAACAGCGCGACATTTAGCAGAATAAGAGTATGCCTTCATCCTTATCC
TTTGCCGCCGCGCCCAACAGGCCCTGGTCACCAGCCTCCACCTCCTCCAA
CTCTTCGTTTGCCACCCACTGCCGCCCCCGAGGCTACATACTGGCGCCTT
CTACTAACACCACGAAAAGTGAGCAGAAGCGACATTCCGTCCGCTACACT
TCGCGATACCTGCAAGAAGCCCAACAACGCGCCATCTCCCGCTCTGCTCA
GCGATTGCATTTGCTTCGACAATCTCGGCTGCACGCGGAGAATGAGTGGG
ACAGGGAAGAATCCTCTGCTGCGGCTGCGGCTGCAGCTGCTGCACTTGAG
GCCAAAAAGGTGGCGAAAAGGGATTCAGTTGGGTCACCTATGCTTTTTCC
ATCAATAGCCCTGAAGTGTGGATGCAGTAGTGTCTTGAAGCCCCTTCCAT
CTCCTCCCTCTGGCGGCGGTGACAAGTCCAGGCCATGGACCCCGCCTCCA
TCTCCCCGCAGCCGTGAGGGTGGCGCGAGCATGACCATCCCTCCTCTCCC
TAATACTACATCCCGCAACACAACGTTCAGCGTCAATTCTCAACGATCAG
GACATTGTCATCAACATGCGCACGTCAAGACTGCAAAAGGAAGCCTTGCT
GGCGCCACCACTACTGCCAACACAACCACAAGGAGCGGCAGCTGCAGCGG
CAGCAGCAGGACTCCAATTACTCGCATTATCAAGGGTGAATGGATCCGAC
ATTCTTCAAGTCAAACTGGAGGGGAAGGACTTTATTGCCTGCTTGATGAG
GGAGGAGGAACAGTGGGGTTTCCCCAGCGACGCCGACGCCGGGGCCGAAA
AAGAGGAGATGAAGATGGAGGAGGAGGAGCAGGAGGAGCAGGAGAAGCAG
GAGCAGTAGGGGGAAGGACTATGCCCTCGTGTACTCGGGCTTGCTCGCCC
ATCGATCCTACAATTGTGGCTTGCATTTTACTGGAGGAGGAGGCCCAGCT
GCAGCAGCAGGAAGAGGAGAAGGAATGGCGGAATAACGAAAGAGTGCGGG
AGGAGGAGGATTCGCGGACGAAAAGGAATACATCAATAGAGGTCTGGCAG
CAAAATGATAAGGGAAGAGTGGAAGGGTTTGAACAGCAGAGTCAGCAGCA
GAGGCATCAGCAGGTCCGCTTTCGGTACTACTACGCCGAGAAGCCGCACC
CTTCGCCGTATCGTCGAGCAGCAGCACCACCACCACCAGCAGATGCACCA
GTGTTGCTTCCACGCAAGCAGCGAAAGCAGCACCAGCAACAGCAGGGGCG
ACATAATCATTTTGATAAGGAAGAGGAGGACGAAGACTTGACGCGCGAGC
TGTGCAGTAAACAGGACCTTGGGGAGCGGGAGGAGCAAGAGATGGGGAGG
GAAGAGAGGCGATGTTTCTCGCTTTCCTCGACACCATCGCCATCGTCTTT
TGGCTCCTCCTCCTCCGTCTCCGTCTCGTCCTCCTCCTGGAAAGACGTCA
TCCCTTTGCCGCGTGAAAATCACAATGCGAGGCGAGAGGGTCATGTTATC
CCCTTAGATGTGTCCGAGCGAGAGCAAGCGGATATCGAGGGGAAGCATGG
AGTAAAGTGCACACATATTTGGGGGGAAAAGAAAGGGAGGGAGGCACAAA
AAATGAGAGTAGCAAGGCGGCTGGCGGAGGAGGTAGCCAACGAGCTGGTG
AAGGAAGCGAGTGAGGAGTTGGAGGGCATCTTAAGAGGCTACGCCGAGGA
CGTCTTTGCCTGGCTCTGAAAGACGAAAAGACATACAAACAAGATGTCGG
GTACCTATTTGGAAGCAAACAAAGAAGATTCACATAAGGCCATCGACAAA
CCTCTTAACGTATTTTTCGACTACTTGCTCGGGGAAATAAGTGAAATTCA
AATGCATATGTGAGAGAG
back to top

protein sequence of NO28G00680.1

>NO28G00680.1-protein ID=NO28G00680.1-protein|Name=NO28G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp
MPSSLSFAAAPNRPWSPASTSSNSSFATHCRPRGYILAPSTNTTKSEQKR
HSVRYTSRYLQEAQQRAISRSAQRLHLLRQSRLHAENEWDREESSAAAAA
AAAALEAKKVAKRDSVGSPMLFPSIALKCGCSSVLKPLPSPPSGGGDKSR
PWTPPPSPRSREGGASMTIPPLPNTTSRNTTFSVNSQRSGHCHQHAHVKT
AKGSLAGATTTANTTTRSGSCSGSSRTPITRIIKGEWIRHSSSQTGGEGL
YCLLDEGGGTVGFPQRRRRRGRKRGDEDGGGGAGGAGEAGAVGGRTMPSC
TRACSPIDPTIVACILLEEEAQLQQQEEEKEWRNNERVREEEDSRTKRNT
SIEVWQQNDKGRVEGFEQQSQQQRHQQVRFRYYYAEKPHPSPYRRAAAPP
PPADAPVLLPRKQRKQHQQQQGRHNHFDKEEEDEDLTRELCSKQDLGERE
EQEMGREERRCFSLSSTPSPSSFGSSSSVSVSSSSWKDVIPLPRENHNAR
REGHVIPLDVSEREQADIEGKHGVKCTHIWGEKKGREAQKMRVARRLAEE
VANELVKEASEELEGILRGYAEDVFAWL*
back to top

mRNA from alignment at chr28:234113..236267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00680.1 ID=NO28G00680.1|Name=NO28G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2155bp|location=Sequence derived from alignment at chr28:234113..236267- (Nannochloropsis oceanica)
AAAAACAGCGCGACATTTAGCAGAATAAGAGTATGCCTTCATCCTTATCC
TTTGCCGCCGCGCCCAACAGGCCCTGGTCACCAGCCTCCACCTCCTCCAA
CTCTTCGTTTGCCACCCACTGCCGCCCCCGAGGCTACATACTGGCGCCTT
CTACTAACACCACGAAAAGTGAGCAGAAGCGACATTCCGTCCGCTACACT
TCGCGATACCTGCAAGAAGCCCAACAACGCGCCATCTCCCGCTCTGCTCA
GCGATTGCATTTGCTTCGACAATCTCGGCTGCACGCGGAGAATGAGTGGG
ACAGGGAAGAATCCTCTGCTGCGGCTGCGGCTGCAGCTGCTGCACTTGAG
GCCAAAAAGGTGGCGAAAAGGGATTCAGTTGGGTCACCTATGCTTTTTCC
ATCAATAGCCCTGAAGTGTGGATGCAGTAGTGTCTTGAAGCCCCTTCCAT
CTCCTCCCTCTGGCGGCGGTGACAAGTCCAGGCCATGGACCCCGCCTCCA
TCTCCCCGCAGCCGTGAGGGTGGCGCGAGCATGACCATCCCTCCTCTCCC
TAATACTACATCCCGCAACACAACGTTCAGCGTCAATTCTCAACGATCAG
GACATTGTCATCAACATGCGCACGTCAAGACTGCAAAAGGAAGCCTTGCT
GGCGCCACCACTACTGCCAACACAACCACAAGGAGCGGCAGCTGCAGCGG
CAGCAGCAGGACTCCAATTACTCGCATTATCAAGGGTGAATGGATCCGAC
ATTCTTCAAGTCAAACTGGAGGGGAAGGACTTTATTGCCTGCTTGATGAG
GGAGGAGGAACAGTGGGGTTTCCCCAGCGACGCCGACGCCGGGGCCGAAA
AAGAGGAGATGAAGATGGAGGAGGAGGAGCAGGAGGAGCAGGAGAAGCAG
GAGCAGTAGGGGGAAGGACTATGCCCTCGTGTACTCGGGCTTGCTCGCCC
ATCGATCCTACAATTGTGGCTTGCATTTTACTGGAGGAGGAGGCCCAGCT
GCAGCAGCAGGAAGAGGAGAAGGAATGGCGGAATAACGAAAGAGTGCGGG
AGGAGGAGGATTCGCGGACGAAAAGGAATACATCAATAGAGGTCTGGCAG
CAAAATGATAAGGGAAGAGTGGAAGGGTTTGAACAGCAGAGTCAGCAGCA
GAGGCATCAGCAGGTCCGCTTTCGGTACTACTACGCCGAGAAGCCGCACC
CTTCGCCGTATCGTCGAGCAGCAGCACCACCACCACCAGCAGATGCACCA
GTGTTGCTTCCACGCAAGCAGCGAAAGCAGCACCAGCAACAGCAGGGGCG
ACATAATCATTTTGATAAGGAAGAGGAGGACGAAGACTTGACGCGCGAGC
TGTGCAGTAAACAGGACCTTGGGGAGCGGGAGGAGCAAGAGATGGGGAGG
GAAGAGAGGCGATGTTTCTCGCTTTCCTCGACACCATCGCCATCGTCTTT
TGGCTCCTCCTCCTCCGTCTCCGTCTCGTCCTCCTCCTGGAAAGACGTCA
TCCCTTTGCCGCGTGAAAATCACAATGCGAGGCGAGAGGGTCATGTTATC
CCCTTAGATGTGTCCGAGCGAGAGCAAGCGGATATCGAGGGGAAGCATGG
AGTAAAGTGCACACATATTTGGGGGGAAAAGAAAGGGAGGGAGGCACAAA
AAATGAGAGTAGCAAGGCGGTAAGTGATGCGAGTGTGATGATGGAGTGGA
TGGGAGGTGGCAGACATCTCCGGCACTCCCACCCTCATTGCCGTAGCCTC
GCGCTCTGCTGAGTGGTACATGGAAGAAACCGTCAGTCTTGTCTCTTAAA
CCTTCCTGCCCAGCCCTTCTGACAGGCACGGATGCGATGGTGTGCAGTTC
AGACATCACCAGATGTGCTCACTGAGTCTCTCTCACTTCTTACAATGTCC
CTGTAGGCTGGCGGAGGAGGTAGCCAACGAGCTGGTGAAGGAAGCGAGTG
AGGAGTTGGAGGGCATCTTAAGAGGCTACGCCGAGGACGTCTTTGCCTGG
CTCTGAAAGACGAAAAGACATACAAACAAGATGTCGGGTACCTATTTGGA
AGCAAACAAAGAAGATTCACATAAGGCCATCGACAAACCTCTTAACGTAT
TTTTCGACTACTTGCTCGGGGAAATAAGTGAAATTCAAATGCATATGTGA
GAGAG
back to top

Coding sequence (CDS) from alignment at chr28:234113..236267-

>NO28G00680.1 ID=NO28G00680.1|Name=NO28G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr28:234113..236267- (Nannochloropsis oceanica)
ATGCCTTCATCCTTATCCTTTGCCGCCGCGCCCAACAGGCCCTGGTCACC
AGCCTCCACCTCCTCCAACTCTTCGTTTGCCACCCACTGCCGCCCCCGAG
GCTACATACTGGCGCCTTCTACTAACACCACGAAAAGTGAGCAGAAGCGA
CATTCCGTCCGCTACACTTCGCGATACCTGCAAGAAGCCCAACAACGCGC
CATCTCCCGCTCTGCTCAGCGATTGCATTTGCTTCGACAATCTCGGCTGC
ACGCGGAGAATGAGTGGGACAGGGAAGAATCCTCTGCTGCGGCTGCGGCT
GCAGCTGCTGCACTTGAGGCCAAAAAGGTGGCGAAAAGGGATTCAGTTGG
GTCACCTATGCTTTTTCCATCAATAGCCCTGAAGTGTGGATGCAGTAGTG
TCTTGAAGCCCCTTCCATCTCCTCCCTCTGGCGGCGGTGACAAGTCCAGG
CCATGGACCCCGCCTCCATCTCCCCGCAGCCGTGAGGGTGGCGCGAGCAT
GACCATCCCTCCTCTCCCTAATACTACATCCCGCAACACAACGTTCAGCG
TCAATTCTCAACGATCAGGACATTGTCATCAACATGCGCACGTCAAGACT
GCAAAAGGAAGCCTTGCTGGCGCCACCACTACTGCCAACACAACCACAAG
GAGCGGCAGCTGCAGCGGCAGCAGCAGGACTCCAATTACTCGCATTATCA
AGGGTGAATGGATCCGACATTCTTCAAGTCAAACTGGAGGGGAAGGACTT
TATTGCCTGCTTGATGAGGGAGGAGGAACAGTGGGGTTTCCCCAGCGACG
CCGACGCCGGGGCCGAAAAAGAGGAGATGAAGATGGAGGAGGAGGAGCAG
GAGGAGCAGGAGAAGCAGGAGCAGTAGGGGGAAGGACTATGCCCTCGTGT
ACTCGGGCTTGCTCGCCCATCGATCCTACAATTGTGGCTTGCATTTTACT
GGAGGAGGAGGCCCAGCTGCAGCAGCAGGAAGAGGAGAAGGAATGGCGGA
ATAACGAAAGAGTGCGGGAGGAGGAGGATTCGCGGACGAAAAGGAATACA
TCAATAGAGGTCTGGCAGCAAAATGATAAGGGAAGAGTGGAAGGGTTTGA
ACAGCAGAGTCAGCAGCAGAGGCATCAGCAGGTCCGCTTTCGGTACTACT
ACGCCGAGAAGCCGCACCCTTCGCCGTATCGTCGAGCAGCAGCACCACCA
CCACCAGCAGATGCACCAGTGTTGCTTCCACGCAAGCAGCGAAAGCAGCA
CCAGCAACAGCAGGGGCGACATAATCATTTTGATAAGGAAGAGGAGGACG
AAGACTTGACGCGCGAGCTGTGCAGTAAACAGGACCTTGGGGAGCGGGAG
GAGCAAGAGATGGGGAGGGAAGAGAGGCGATGTTTCTCGCTTTCCTCGAC
ACCATCGCCATCGTCTTTTGGCTCCTCCTCCTCCGTCTCCGTCTCGTCCT
CCTCCTGGAAAGACGTCATCCCTTTGCCGCGTGAAAATCACAATGCGAGG
CGAGAGGGTCATGTTATCCCCTTAGATGTGTCCGAGCGAGAGCAAGCGGA
TATCGAGGGGAAGCATGGAGTAAAGTGCACACATATTTGGGGGGAAAAGA
AAGGGAGGGAGGCACAAAAAATGAGAGTAGCAAGGCGGCTGGCGGAGGAG
GTAGCCAACGAGCTGGTGAAGGAAGCGAGTGAGGAGTTGGAGGGCATCTT
AAGAGGCTACGCCGAGGACGTCTTTGCCTGGCTCTGA
back to top
Synonyms
Publications