NO28G00570, NO28G00570 (gene) Nannochloropsis oceanica

Overview
NameNO28G00570
Unique NameNO28G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1672
Alignment locationchr28:201671..203342 -

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Properties
Property NameValue
DescriptionPlant like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:201671..203342 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO28G00570 vs. NCBI_GenBank
Match: EWM20912.1 (plant like protein [Nannochloropsis gaditana])

HSP 1 Score: 283.9 bits (725), Expect = 4.600e-73
Identity = 161/238 (67.65%), Postives = 177/238 (74.37%), Query Frame = 0
Query:    1 MRKLYLVVLSSLAAMSCVAATASLPATLVTTRRPSSPSCCFLRPSLPSASS------XXXXXXXXXXXXXXXXXXXXXXXXESPSLFERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLIVWVGRQPALSRFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLLYVSAKLALGEKPNEIPLVSEAAELTSGPF 233
            MR  YL+ LSSL A + VA   S P+T          S CF+  SLP A S                              ESPSLFERAFSA PY+LPVLDS+NYS+FLAFYAP  FNP+YAALDPLLAVYK+SPFINLAIYLLIVWVGRQPALSR+VRFNFQQAIILD+ALVIPSILTSILREQAAPVWVQEPVANTLFFILSASL YV+ KL LG+KPNEIPL+SEAAE+T+GPF
Sbjct:   66 MRAFYLLALSSLLAAN-VAMAVSRPST-------DMSSSCFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF 295          
BLAST of NO28G00570 vs. NCBI_GenBank
Match: XP_005854917.1 (hypothetical protein NGA_0603620 [Nannochloropsis gaditana CCMP526] >EKU21446.1 hypothetical protein NGA_0603620 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 280.4 bits (716), Expect = 5.000e-72
Identity = 138/157 (87.90%), Postives = 151/157 (96.18%), Query Frame = 0
Query:   76 ESPSLFERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLIVWVGRQPALSRFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLLYVSAKLALGEKPNEIPLVSEAAELTSGPF 233
            ESPSLFERAFSA PY+LPVLDS+NYS+FLAFYAP  FNP+YAALDPLLAVYK+SPF+NLAIYLLIVWVGRQPALSR+VRFNFQQAIILD+ALVIPSILTSILREQAAPVWVQEPVANTLFFILSASL YV+ KL LG+KPNEIPL+SEAAE+T+GPF
Sbjct:   56 ESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFVNLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF 212          
BLAST of NO28G00570 vs. NCBI_GenBank
Match: OSX68593.1 (hypothetical protein BU14_2526s0001, partial [Porphyra umbilicalis])

HSP 1 Score: 104.8 bits (260), Expect = 3.800e-19
Identity = 54/148 (36.49%), Postives = 87/148 (58.78%), Query Frame = 0
Query:   86 SAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYL-LIVWVGRQPALSRFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLLYVSAKLALGEKPNEIPLVSEAAELTSGPF 233
            ++ PY+LP+LD + + +F+   AP     V  A+ PL  +Y+ +PF    I+  L V + R    SRFVRFN QQA+++D+ L++P +L   +     P W+ E  ++T+F+ + AS++Y       GE P++IP VSEA E   GP+
Sbjct:    2 ASAPYLLPLLDGLVFGRFVFERAPALAALVVPAVAPLFRLYRGTPFFAFGIFFALYVLIVRNTGFSRFVRFNTQQALLIDVVLILPQLLGGAVAAAGVPGWILEAGSSTIFYAVVASVVYAVVSNLRGETPDQIPGVSEAVEAQIGPY 149          
BLAST of NO28G00570 vs. NCBI_GenBank
Match: XP_005538732.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM82696.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-16
Identity = 57/153 (37.25%), Postives = 88/153 (57.52%), Query Frame = 0
Query:   82 ERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIY-LLIVWVGRQPALSRFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLLYVSAKLALGEKPNEIPLVSEAA--ELTSGP 232
            ER    +PY++P+LDS+ Y K++    P F   V   L PLL++Y+  PF+ L I+ L++V V R P +S FVRFN  QA+ LDIAL++P +   +           + +  ++F+ +   +LYV      G+ P+ IPL+SEAA  +  SGP
Sbjct:  181 ERLLGILPYLVPLLDSLVYGKYVFERFPIFSMFVLQPLWPLLSIYRGIPFLPLIIFVLMLVLVVRNPRVSYFVRFNTMQALTLDIALILPQLFQGLSNALPVSAVAIQVLQASVFYGMLGCILYVIQSCGRGQVPDRIPLISEAAHTQTMSGP 333          
BLAST of NO28G00570 vs. NCBI_GenBank
Match: PRW39238.1 (TIC 20- chloroplastic [Chlorella sorokiniana])

HSP 1 Score: 90.1 bits (222), Expect = 9.700e-15
Identity = 52/153 (33.99%), Postives = 89/153 (58.17%), Query Frame = 0
Query:   77 SPSLFERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLI-VWVGRQPALSRFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVA--NTLFFILSASLLYVSAKLALGEKPNEIPLVSEAAE 227
            SP + +R  +A+PY++P+LD + Y KF     PQ F+ +   L+PL+ +Y S PF  L ++  + + +   P  +R+VR+N  QAI+LDI L++P ++ SI+R       +Q  +   NT+F  L A + Y     A G+    +P+V++AA+
Sbjct:  102 SPEIPDRVVAAIPYLIPLLDGLRYGKFFLVQFPQ-FSTLLLPLEPLIRLYFSVPFAGLVVFFAVYLGIINNPNFTRYVRYNAMQAILLDIILILPGLIESIVRPPMGGPGLQIYITLYNTIFLFLFACVAYGMGSCATGQTA-RLPIVADAAD 252          
BLAST of NO28G00570 vs. NCBI_GenBank
Match: XP_005765199.1 (hypothetical protein EMIHUDRAFT_257034 [Emiliania huxleyi CCMP1516] >EOD12770.1 hypothetical protein EMIHUDRAFT_257034 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 89.7 bits (221), Expect = 1.300e-14
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = 0
Query:   78 PSLFERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLIVWVGR-QPALSRFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLLYVSAKLALGEKPNEIPLVSEAAELTSGPF 233
            P   ER F+ +PY+LP LD   Y  ++    P   +   A L PL+  + S PF  +  ++ + +  R    LSRFVRFN QQA++LDI L+IPS+ +        P  V    +N +F+ ++  + Y     A GE P+++P++SEAA L  GPF
Sbjct:   67 PPAVERVFATLPYVLPFLDGFQYGLYVFNNVPGGVSFAEAVL-PLVVAFNSLPFSGIIFFIGLSFFTRPDSGLSRFVRFNIQQALVLDILLIIPSLFSG--AAGMVPSSVAILGSNFVFYTMALVVTYALYSNARGELPDQVPVISEAAGLQIGPF 219          
BLAST of NO28G00570 vs. NCBI_GenBank
Match: XP_005768057.1 (hypothetical protein EMIHUDRAFT_103158 [Emiliania huxleyi CCMP1516] >XP_005789471.1 hypothetical protein EMIHUDRAFT_110050 [Emiliania huxleyi CCMP1516] >EOD15628.1 hypothetical protein EMIHUDRAFT_103158 [Emiliania huxleyi CCMP1516] >EOD37042.1 hypothetical protein EMIHUDRAFT_110050 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 89.4 bits (220), Expect = 1.600e-14
Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = 0
Query:   78 PSLFERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLIVWVGR-QPALSRFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLLYVSAKLALGEKPNEIPLVSEAAELTSGPF 233
            P   ER F+ +PY+LP LD   Y  ++    P       A L PL+  + S PF  +  ++ + +  R    LSRFVRFN QQA++LDI L+IPS+ +        P  V    +N +F+ ++  + Y     A GE P+++P++SEAA L  GPF
Sbjct:    5 PPAVERVFATLPYVLPFLDGFQYGLYVFNNVPGGVGFAEAVL-PLVVAFNSLPFSGIIFFIGLSFFTRPDSGLSRFVRFNIQQALVLDILLIIPSLFSG--AAGMVPSSVAILGSNFVFYTMALVVTYALYSNARGELPDQVPVISEAAGLQIGPF 157          
BLAST of NO28G00570 vs. NCBI_GenBank
Match: XP_005706234.1 (hypothetical protein Gasu_29350 [Galdieria sulphuraria] >EME29714.1 hypothetical protein Gasu_29350 [Galdieria sulphuraria])

HSP 1 Score: 89.0 bits (219), Expect = 2.200e-14
Identity = 50/150 (33.33%), Postives = 85/150 (56.67%), Query Frame = 0
Query:   78 PSLFERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIY-LLIVWVGRQPALSRFVRFNFQQAIILDIALVIPSI-LTSILREQAAPVWVQEPVANTLFFILSASLLYVSAKLALGEKPNEIPLVSEAA 226
            PS   R  + +PY++P+LD V Y +F+    P     ++  L PLL VY+  PF+   ++ +L  ++ R   +  F+RFN  QAI++D+ L+IP + L +     A P  V E + + +F  +    +YV   +A G KP+++PL+SEA+
Sbjct:   78 PSPKNRLLAFLPYLMPLLDGVVYGRFVFAKYPVISAFIFYPLQPLLIVYRGIPFLAFVLFAMLFYFIVRNETVDNFIRFNTMQAILIDLVLIIPQMFLHATSASGAIPPGVVESLCSLVFCAIVVITMYVIICVARGNKPDQVPLISEAS 227          
BLAST of NO28G00570 vs. NCBI_GenBank
Match: XP_002179527.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49350.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.7 bits (213), Expect = 1.100e-13
Identity = 47/152 (30.92%), Postives = 84/152 (55.26%), Query Frame = 0
Query:   77 SPSLFERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLIVWVGRQPALSRFVRFNFQQAIILDIALVIPSILTSILR----EQAAPVWVQEPVANTLFFILSASLLYVSAKLALGEKPNEIPLVSEA 225
            +P+  ++  S +PY+ P+LD + +++FL    P   NP+   +    A+Y+S PF     +  + ++   P ++R +R+N QQAI LDIAL  P ++ ++       +  P  V E  ++ +F  L A+L Y +    LG  P++IP++SEA
Sbjct:  200 APTTQDKLISVLPYLFPLLDGLQFARFLVLENPD--NPISGIIALSYALYRSIPFGGFIAFFALSFLSGNPTINRLIRYNMQQAIFLDIALFFPGLIAAVFSLVGGGKFLPQGVTEIGSDVMFVTLLATLGYCTVSSLLGGTPDKIPIISEA 349          
BLAST of NO28G00570 vs. NCBI_GenBank
Match: OEU10973.1 (hypothetical protein FRACYDRAFT_246074 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 86.7 bits (213), Expect = 1.100e-13
Identity = 52/157 (33.12%), Postives = 83/157 (52.87%), Query Frame = 0
Query:   76 ESPSLFERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLIVWVGRQPALSRFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEP-----VANTLFF-ILSASLLYVSAKLALGEKPNEIPLVSEAAE 227
            + P+  ++  S +PY+ P+LDS+ + +FL        NP+   L  L   Y+S PF     +L +  +   P L++ VRFN QQAI LDIAL  P ++ +++    +      P      ANT+ F +L  ++LY S    LG  P+ IP++S+A E
Sbjct:  148 KDPTTKDKIISVIPYLFPLLDSLQFGRFLIMENAD--NPLVGLLGLLFTAYRSIPFSGFIAFLALNTLSSNPGLNKLVRFNMQQAIFLDIALFFPGLVIALIGGLGSVAGFTIPDAGNQAANTVIFGVLLLTVLYTSISSLLGITPDAIPIISKAVE 302          
The following BLAST results are available for this feature:
BLAST of NO28G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20912.14.600e-7367.65plant like protein [Nannochloropsis gaditana][more]
XP_005854917.15.000e-7287.90hypothetical protein NGA_0603620 [Nannochloropsis ... [more]
OSX68593.13.800e-1936.49hypothetical protein BU14_2526s0001, partial [Porp... [more]
XP_005538732.12.300e-1637.25hypothetical protein, conserved [Cyanidioschyzon m... [more]
PRW39238.19.700e-1533.99TIC 20- chloroplastic [Chlorella sorokiniana][more]
XP_005765199.11.300e-1435.90hypothetical protein EMIHUDRAFT_257034 [Emiliania ... [more]
XP_005768057.11.600e-1435.90hypothetical protein EMIHUDRAFT_103158 [Emiliania ... [more]
XP_005706234.12.200e-1433.33hypothetical protein Gasu_29350 [Galdieria sulphur... [more]
XP_002179527.11.100e-1330.92predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU10973.11.100e-1333.12hypothetical protein FRACYDRAFT_246074 [Fragilario... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00570.1NO28G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606704gene_9158Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100061g31gene9480Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00570.1NO28G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00570 ID=NO28G00570|Name=NO28G00570|organism=Nannochloropsis oceanica|type=gene|length=1672bp
ATTAGCCCCACTTTTTCACCTCCCCCAGCCTTCCATGCAACACACGGGTG
CCGCGCCCCATTTAGTATCTGACGCACAAGACATTTTGGTGGTGCACAGG
CTTTGCTTCACAAAGCTAATTGCCTGTGACCTTAAGCAGGAGAGTTGCCT
GAGGACATGCAGGGGCAACCAAGTTGCGTTTAATCTTTGTCGGTTTCTTA
TTTCCTTGTCTCAAGCCACCACCTCACCATAAACTACCTAGTTTCCCCCC
CTAGTTGCACAGCCTCAAAACGAAGTCCAACCTAAATTTTCGTCCTTCAT
CGCCATGCGGAAACTCTACCTTGTTGTCCTGTCGTCCCTCGCGGCCATGA
GCTGTGTCGCAGCCACTGCCTCTCTCCCCGCCACTCTTGTCACAACCCGC
CGCCCATCCTCCCCGTCCTGCTGCTTCCTCCGTCCCTCCCTCCCTTCTGC
CTCCTCAAGAAGAAGAACATCCCGCTCCTCTTTCTCATTCACCACAACCA
CCATGCGCCTGAACGCCAACCAAAACGATGAGAGTCCTTCCCTATTCGAA
CGTGCCTTCAGCGCCATGCCCTACATGCTGCCCGTCCTCGACTCGGTTAA
CTACTCCAAATTCCTCGCGTTTTACGCTCCCCAGTTTTTCAATCCCGTCT
ATGCGGCGCTGGATCCCTTGCTAGCCGTTTACAAGTCCTCCCCGTTCATC
AATCTGGCGATTTACCTGCTGATTGTGTGGGTAGGACGACAGCCAGCCCT
CAGTCGGTTCGTGCGATTTAATTTCCAACAAGgtgaggagggagagaggg
gcgaaagttgggtaggaggaaaagacagaaggaaaagaaattcgagcttg
atttgtgcagttgaaaactgagtatttgacctttctccctccttctctcc
ctccgcccctccatccctcactccctccctctcttaagCCATCATCTTGG
ACATTGCTCTGGTCATTCCTTCCATTCTCACCTCCATTCTGAGGGAGCAA
GCCGCACCTGTGTGGGTGCAAGAACCCGTGGCCAACACCTTATTCTTCAT
TCTGTCCGCCTCCCTGCTCTACGTGTCTGCCAAGCTGGCCTTGGGGGAGA
AACCTAACGAAATTCCATTGGTCAGTGAAGCGGCAGAACTTACTTCAGGG
CCTTTCTAAAGAAGAGGCGGTAGAGAGGGAGGGAGGAAGGGAAGGATAGA
AAATCTGGTGGTATGTTGAATTTTTGGTGGAGCCAGTGGGGGAGAAGCCG
ATCGAAAATCGTTGGTTAGCCAAGCAGCAGCATCAGCAGCAGCAGCAATG
ACAGCGAACCTGTTATTATGACTAGATAGTGAGGTACTGCTCGCTCCCTT
CCCTCCCGCCCTCCCTCCACCTCTGCGCTTGATACACTCTTGGCTTAGAG
TCGTGGACGGCCGGGAGAAGAGGGAGCGAGGAAGGGAAGGCATAAGGGAG
GGGAAGGATGTAAATGCAAGAAAATGATACTAGCTTGCACTGATGGAGGA
CGGAGGGCAAGAAGAGGAGCAAGAAGAGGAGAAGGAAGGGCAGAGAACGA
AAAGAAGGAAGACTACGTGTTGAAAGCCAAGCCTTTAATCCGTGTCCCTC
CACCTAAGTTTGAAGCAACCCTTGAATATCTTCATCGTCTCTTCCTTTCT
GATTTACCTCCGCAAGAGTCTT
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protein sequence of NO28G00570.1

>NO28G00570.1-protein ID=NO28G00570.1-protein|Name=NO28G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MRKLYLVVLSSLAAMSCVAATASLPATLVTTRRPSSPSCCFLRPSLPSAS
SRRRTSRSSFSFTTTTMRLNANQNDESPSLFERAFSAMPYMLPVLDSVNY
SKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLIVWVGRQPALS
RFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVANTLFFILSA
SLLYVSAKLALGEKPNEIPLVSEAAELTSGPF*
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Synonyms
Publications