NO28G00570.1, NO28G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00570.1
Unique NameNO28G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1516
Alignment locationchr28:201671..203342 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:201671..203342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00570.1 vs.
Match: EWM20912.1 (plant like protein [Nannochloropsis gaditana])

HSP 1 Score: 304.3 bits (778), Expect = 3.300e-79
Identity = 173/238 (72.69%), Postives = 196/238 (82.35%), Query Frame = 0 
Query:    1 MRKLYLVVLSSLAAMSCVAATASLPATLVTTRRPSSPSCCFLRPSLPSASS---RRRT---SRSSFSFTTTTMRLNANQNDESPSLFERAFSAMPYMLPVLDSVNYSKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLIVWVGRQPALSRFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLLYVSAKLALGEKPNEIPLVSEAAELTSGPF 233
            MR  YL+ LSSL A + VA   S P+T ++       S CF+  SLP A S   RRR    S ++ S ++  MRLNANQ+ ESPSLFERAFSA PY+LPVLDS+NYS+FLAFYAP  FNP+YAALDPLLAVYK+SPFINLAIYLLIVWVGRQPALSR+VRFNFQQAIILD+ALVIPSILTSILREQAAPVWVQEPVANTLFFILSASL YV+ KL LG+KPNEIPL+SEAAE+T+GPF
Sbjct:   66 MRAFYLLALSSLLAAN-VAMAVSRPSTDMS-------SSCFVPTSLPRAMSSLQRRRPYTPSPATSSRSSCCMRLNANQSPESPSLFERAFSATPYLLPVLDSINYSRFLAFYAPDLFNPIYAALDPLLAVYKASPFINLAIYLLIVWVGRQPALSRYVRFNFQQAIILDVALVIPSILTSILREQAAPVWVQEPVANTLFFILSASLAYVAVKLTLGQKPNEIPLISEAAEMTAGPF 295
The following BLAST results are available for this feature:
BLAST of NO28G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20912.13.300e-7972.69plant like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00570NO28G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00570.1NO28G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00570.1.cds1NO28G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00570.1.cds2NO28G00570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00570.1 ID=NO28G00570.1|Name=NO28G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1516bp
ATTAGCCCCACTTTTTCACCTCCCCCAGCCTTCCATGCAACACACGGGTG
CCGCGCCCCATTTAGTATCTGACGCACAAGACATTTTGGTGGTGCACAGG
CTTTGCTTCACAAAGCTAATTGCCTGTGACCTTAAGCAGGAGAGTTGCCT
GAGGACATGCAGGGGCAACCAAGTTGCGTTTAATCTTTGTCGGTTTCTTA
TTTCCTTGTCTCAAGCCACCACCTCACCATAAACTACCTAGTTTCCCCCC
CTAGTTGCACAGCCTCAAAACGAAGTCCAACCTAAATTTTCGTCCTTCAT
CGCCATGCGGAAACTCTACCTTGTTGTCCTGTCGTCCCTCGCGGCCATGA
GCTGTGTCGCAGCCACTGCCTCTCTCCCCGCCACTCTTGTCACAACCCGC
CGCCCATCCTCCCCGTCCTGCTGCTTCCTCCGTCCCTCCCTCCCTTCTGC
CTCCTCAAGAAGAAGAACATCCCGCTCCTCTTTCTCATTCACCACAACCA
CCATGCGCCTGAACGCCAACCAAAACGATGAGAGTCCTTCCCTATTCGAA
CGTGCCTTCAGCGCCATGCCCTACATGCTGCCCGTCCTCGACTCGGTTAA
CTACTCCAAATTCCTCGCGTTTTACGCTCCCCAGTTTTTCAATCCCGTCT
ATGCGGCGCTGGATCCCTTGCTAGCCGTTTACAAGTCCTCCCCGTTCATC
AATCTGGCGATTTACCTGCTGATTGTGTGGGTAGGACGACAGCCAGCCCT
CAGTCGGTTCGTGCGATTTAATTTCCAACAAGCCATCATCTTGGACATTG
CTCTGGTCATTCCTTCCATTCTCACCTCCATTCTGAGGGAGCAAGCCGCA
CCTGTGTGGGTGCAAGAACCCGTGGCCAACACCTTATTCTTCATTCTGTC
CGCCTCCCTGCTCTACGTGTCTGCCAAGCTGGCCTTGGGGGAGAAACCTA
ACGAAATTCCATTGGTCAGTGAAGCGGCAGAACTTACTTCAGGGCCTTTC
TAAAGAAGAGGCGGTAGAGAGGGAGGGAGGAAGGGAAGGATAGAAAATCT
GGTGGTATGTTGAATTTTTGGTGGAGCCAGTGGGGGAGAAGCCGATCGAA
AATCGTTGGTTAGCCAAGCAGCAGCATCAGCAGCAGCAGCAATGACAGCG
AACCTGTTATTATGACTAGATAGTGAGGTACTGCTCGCTCCCTTCCCTCC
CGCCCTCCCTCCACCTCTGCGCTTGATACACTCTTGGCTTAGAGTCGTGG
ACGGCCGGGAGAAGAGGGAGCGAGGAAGGGAAGGCATAAGGGAGGGGAAG
GATGTAAATGCAAGAAAATGATACTAGCTTGCACTGATGGAGGACGGAGG
GCAAGAAGAGGAGCAAGAAGAGGAGAAGGAAGGGCAGAGAACGAAAAGAA
GGAAGACTACGTGTTGAAAGCCAAGCCTTTAATCCGTGTCCCTCCACCTA
AGTTTGAAGCAACCCTTGAATATCTTCATCGTCTCTTCCTTTCTGATTTA
CCTCCGCAAGAGTCTT
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protein sequence of NO28G00570.1

>NO28G00570.1-protein ID=NO28G00570.1-protein|Name=NO28G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MRKLYLVVLSSLAAMSCVAATASLPATLVTTRRPSSPSCCFLRPSLPSAS
SRRRTSRSSFSFTTTTMRLNANQNDESPSLFERAFSAMPYMLPVLDSVNY
SKFLAFYAPQFFNPVYAALDPLLAVYKSSPFINLAIYLLIVWVGRQPALS
RFVRFNFQQAIILDIALVIPSILTSILREQAAPVWVQEPVANTLFFILSA
SLLYVSAKLALGEKPNEIPLVSEAAELTSGPF*
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mRNA from alignment at chr28:201671..203342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00570.1 ID=NO28G00570.1|Name=NO28G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp|location=Sequence derived from alignment at chr28:201671..203342- (Nannochloropsis oceanica)
ATTAGCCCCACTTTTTCACCTCCCCCAGCCTTCCATGCAACACACGGGTG
CCGCGCCCCATTTAGTATCTGACGCACAAGACATTTTGGTGGTGCACAGG
CTTTGCTTCACAAAGCTAATTGCCTGTGACCTTAAGCAGGAGAGTTGCCT
GAGGACATGCAGGGGCAACCAAGTTGCGTTTAATCTTTGTCGGTTTCTTA
TTTCCTTGTCTCAAGCCACCACCTCACCATAAACTACCTAGTTTCCCCCC
CTAGTTGCACAGCCTCAAAACGAAGTCCAACCTAAATTTTCGTCCTTCAT
CGCCATGCGGAAACTCTACCTTGTTGTCCTGTCGTCCCTCGCGGCCATGA
GCTGTGTCGCAGCCACTGCCTCTCTCCCCGCCACTCTTGTCACAACCCGC
CGCCCATCCTCCCCGTCCTGCTGCTTCCTCCGTCCCTCCCTCCCTTCTGC
CTCCTCAAGAAGAAGAACATCCCGCTCCTCTTTCTCATTCACCACAACCA
CCATGCGCCTGAACGCCAACCAAAACGATGAGAGTCCTTCCCTATTCGAA
CGTGCCTTCAGCGCCATGCCCTACATGCTGCCCGTCCTCGACTCGGTTAA
CTACTCCAAATTCCTCGCGTTTTACGCTCCCCAGTTTTTCAATCCCGTCT
ATGCGGCGCTGGATCCCTTGCTAGCCGTTTACAAGTCCTCCCCGTTCATC
AATCTGGCGATTTACCTGCTGATTGTGTGGGTAGGACGACAGCCAGCCCT
CAGTCGGTTCGTGCGATTTAATTTCCAACAAGGTGAGGAGGGAGAGAGGG
GCGAAAGTTGGGTAGGAGGAAAAGACAGAAGGAAAAGAAATTCGAGCTTG
ATTTGTGCAGTTGAAAACTGAGTATTTGACCTTTCTCCCTCCTTCTCTCC
CTCCGCCCCTCCATCCCTCACTCCCTCCCTCTCTTAAGCCATCATCTTGG
ACATTGCTCTGGTCATTCCTTCCATTCTCACCTCCATTCTGAGGGAGCAA
GCCGCACCTGTGTGGGTGCAAGAACCCGTGGCCAACACCTTATTCTTCAT
TCTGTCCGCCTCCCTGCTCTACGTGTCTGCCAAGCTGGCCTTGGGGGAGA
AACCTAACGAAATTCCATTGGTCAGTGAAGCGGCAGAACTTACTTCAGGG
CCTTTCTAAAGAAGAGGCGGTAGAGAGGGAGGGAGGAAGGGAAGGATAGA
AAATCTGGTGGTATGTTGAATTTTTGGTGGAGCCAGTGGGGGAGAAGCCG
ATCGAAAATCGTTGGTTAGCCAAGCAGCAGCATCAGCAGCAGCAGCAATG
ACAGCGAACCTGTTATTATGACTAGATAGTGAGGTACTGCTCGCTCCCTT
CCCTCCCGCCCTCCCTCCACCTCTGCGCTTGATACACTCTTGGCTTAGAG
TCGTGGACGGCCGGGAGAAGAGGGAGCGAGGAAGGGAAGGCATAAGGGAG
GGGAAGGATGTAAATGCAAGAAAATGATACTAGCTTGCACTGATGGAGGA
CGGAGGGCAAGAAGAGGAGCAAGAAGAGGAGAAGGAAGGGCAGAGAACGA
AAAGAAGGAAGACTACGTGTTGAAAGCCAAGCCTTTAATCCGTGTCCCTC
CACCTAAGTTTGAAGCAACCCTTGAATATCTTCATCGTCTCTTCCTTTCT
GATTTACCTCCGCAAGAGTCTT
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Coding sequence (CDS) from alignment at chr28:201671..203342-

>NO28G00570.1 ID=NO28G00570.1|Name=NO28G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr28:201671..203342- (Nannochloropsis oceanica)
ATGCGGAAACTCTACCTTGTTGTCCTGTCGTCCCTCGCGGCCATGAGCTG
TGTCGCAGCCACTGCCTCTCTCCCCGCCACTCTTGTCACAACCCGCCGCC
CATCCTCCCCGTCCTGCTGCTTCCTCCGTCCCTCCCTCCCTTCTGCCTCC
TCAAGAAGAAGAACATCCCGCTCCTCTTTCTCATTCACCACAACCACCAT
GCGCCTGAACGCCAACCAAAACGATGAGAGTCCTTCCCTATTCGAACGTG
CCTTCAGCGCCATGCCCTACATGCTGCCCGTCCTCGACTCGGTTAACTAC
TCCAAATTCCTCGCGTTTTACGCTCCCCAGTTTTTCAATCCCGTCTATGC
GGCGCTGGATCCCTTGCTAGCCGTTTACAAGTCCTCCCCGTTCATCAATC
TGGCGATTTACCTGCTGATTGTGTGGGTAGGACGACAGCCAGCCCTCAGT
CGGTTCGTGCGATTTAATTTCCAACAAGCCATCATCTTGGACATTGCTCT
GGTCATTCCTTCCATTCTCACCTCCATTCTGAGGGAGCAAGCCGCACCTG
TGTGGGTGCAAGAACCCGTGGCCAACACCTTATTCTTCATTCTGTCCGCC
TCCCTGCTCTACGTGTCTGCCAAGCTGGCCTTGGGGGAGAAACCTAACGA
AATTCCATTGGTCAGTGAAGCGGCAGAACTTACTTCAGGGCCTTTCTAA
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Synonyms
Publications