NO28G00480, NO28G00480 (gene) Nannochloropsis oceanica

Overview
NameNO28G00480
Unique NameNO28G00480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1651
Alignment locationchr28:174877..176527 +

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Properties
Property NameValue
DescriptionTATA binding protein associated factor 21kDa subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:174877..176527 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0046982protein heterodimerization activity
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0006413translational initiation
GO:0006352DNA-templated transcription, initiation
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003162TFIID-31
Homology
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_013421558.1 (transcription initiation factor TFIID subunit 9B [Lingula anatina])

HSP 1 Score: 76.3 bits (186), Expect = 1.300e-10
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108
            + Q+ A++L  MGV DY+P+V   + E+  R V D+L ++  YA +A +K+ID  D +LA Q K   S ++P PP+D +++VA   NSQ L    P   P LPP
Sbjct:   11 DAQVMASILKDMGVTDYEPRVINQMLEFTYRYVTDVLDDAKVYANHAGKKNIDTEDVKLAIQCKLDHSYTTP-PPKDLLMEVAKHRNSQSLPLIKPYTGPKLPP 113          
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_014664533.1 (PREDICTED: transcription initiation factor TFIID subunit 9B-like, partial [Priapulus caudatus])

HSP 1 Score: 76.3 bits (186), Expect = 1.300e-10
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108
            + Q+  A+L  M V DY+P+V   + E+  R +  +L ++  Y  YA+RK++D  D +LA Q++  FS +SP PPRD +++++   NSQ L    P   P LPP
Sbjct:   10 DAQVMQAILRDMAVTDYEPRVVNQMLEFTYRYITGILDDARVYQNYAKRKNLDFQDVKLAIQSRMDFSFTSP-PPRDLVIELSRQKNSQPLPIIKPHTGPKLPP 112          
BLAST of NO28G00480 vs. NCBI_GenBank
Match: PVD34379.1 (hypothetical protein C0Q70_05651 [Pomacea canaliculata])

HSP 1 Score: 75.9 bits (185), Expect = 1.700e-10
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108
            + Q+ +A+L  MGV +Y+PK+   + E+  R + D+L ++  YA +A +K+ID  D +LA Q++   S ++P PPRD ++ +    NSQ L    P  +P LPP
Sbjct:   12 DAQVMSAILKDMGVLEYEPKLVNQMLEFTFRYITDILDDAKVYASHANKKNIDADDVKLAVQSRTDHSFTNP-PPRDLLLDICRQKNSQPLSAIKPYSSPRLPP 114          
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_009044402.1 (hypothetical protein LOTGIDRAFT_109218 [Lottia gigantea] >ESP04893.1 hypothetical protein LOTGIDRAFT_109218 [Lottia gigantea])

HSP 1 Score: 75.5 bits (184), Expect = 2.200e-10
Identity = 44/128 (34.38%), Postives = 72/128 (56.25%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPPLSQAAGDELLANDYVAGTPRSISL 132
            + Q+ AA+L  MGV +Y+P++   + E+  R V D+L ++  Y+ +A +K ID+ D +LA Q K   S ++P PPRD ++ ++   N+Q+L    P   P LPP        L A +Y   T + +SL
Sbjct:   11 DAQVMAAILKDMGVVEYEPRIINQMLEFSYRYVTDILDDAKIYSSHANKKTIDVDDVKLAVQCKMDHSFTAP-PPRDLLMDISRHKNNQQLPLIKPYTGPRLPPDRYC----LSAPNYKLKTAKKVSL 133          
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_014775809.1 (PREDICTED: transcription initiation factor TFIID subunit 9B-like [Octopus bimaculoides] >KOF83643.1 hypothetical protein OCBIM_22023437mg [Octopus bimaculoides])

HSP 1 Score: 74.7 bits (182), Expect = 3.800e-10
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108
            + Q+ AA+L  MGV+DY+P+    + E+  R V D+L +S  Y+ +A +K+ID  D RLA Q +   + ++P PPRD ++++    NSQ L    P   P LPP
Sbjct:   10 DAQVMAAILKDMGVQDYEPRCINQMLEFAYRYVTDVLDDSKVYSSHASKKNIDGDDVRLAIQCRMDHTFTTP-PPRDLLMEIVRTKNSQPLPLIKPYSGPRLPP 112          
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_014236467.1 (transcription initiation factor TFIID subunit 9-like [Trichogramma pretiosum])

HSP 1 Score: 73.6 bits (179), Expect = 8.400e-10
Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108
            + Q+  +++  MG+ +Y+PKV   L E+  R V+ +L +S  YA +A++K ID+ D +LAA+ +   S ++P PPR+ ++ VA V N + L P  PS+   LPP
Sbjct:   16 DAQVILSIMKDMGISEYEPKVINQLLEFTYRYVHTILEDSKVYANHAKKKTIDVEDVQLAAKMQMEKSFTNP-PPREVLMDVAKVKNVEPLPPVKPSYGLRLPP 118          
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_002599712.1 (hypothetical protein BRAFLDRAFT_272379 [Branchiostoma floridae] >EEN55724.1 hypothetical protein BRAFLDRAFT_272379 [Branchiostoma floridae])

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-9
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPPLSQAAGDELLANDY 122
            + Q+ AAVL  MGV DY+P+V   + E+  R V D+   +  Y+ +A++K +D SD +LA +     S ++P PPRD ++++A   NS  L    P   P LPP        LL+N+Y
Sbjct:   10 DAQVMAAVLKDMGVTDYEPRVINQMLEFTYRYVTDIFENARVYSTFAKKKEMDTSDVKLAIRHNSDHSFATP-PPRDFLMEIARQKNSTPLPLIKPYGGPRLPPDRYC----LLSNNY 122          
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_019623446.1 (PREDICTED: transcription initiation factor TFIID subunit 9-like [Branchiostoma belcheri])

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-9
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPPLSQAAGDELLANDY 122
            + Q+ AAVL  MGV DY+P+V   + E+  R V D+   +  Y+ +A++K +D SD +LA +     S ++P PPRD ++++A   NS  L    P   P LPP        LL+N+Y
Sbjct:   10 DAQVMAAVLKDMGVTDYEPRVINQMLEFTYRYVTDIFENARVYSTFAKKKEMDTSDVKLAIRHNSDHSFATP-PPRDFLMEIARQKNSTPLPLIKPYGGPRLPPDRYC----LLSNNY 122          
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_014220061.1 (transcription initiation factor TFIID subunit 9 [Copidosoma floridanum])

HSP 1 Score: 70.9 bits (172), Expect = 5.400e-9
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108
            + Q+  +++  MG+ DY+PKV   L E+  R V  +L +S  YA + ++K ID+ D RLA + +   S ++P PPR+ +++VA V NS  L    PS+   LPP
Sbjct:   17 DAQVIVSIMKDMGITDYEPKVINQLLEFTYRYVTCILDDSKVYANHGKKKLIDLDDVRLAVKMQTEKSFTNP-PPREVLIEVAKVKNSTPLPFVKPSYGLRLPP 119          
BLAST of NO28G00480 vs. NCBI_GenBank
Match: OBZ88012.1 (Transcription initiation factor TFIID subunit 9 [Choanephora cucurbitarum])

HSP 1 Score: 70.9 bits (172), Expect = 5.400e-9
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 0
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLP 107
            + ++ + +L S+GVEDYDPKV   L E+  R  +D+  +SL YA++A +  ID+ D +LA Q +   S ++P PP++ ++++A   N Q L   P  +   LP
Sbjct:   14 DARIVSLILQSLGVEDYDPKVVHQLLEFAHRYTSDVFQDSLVYAEHANKTDIDLEDIQLAIQGRVNHSFTTP-PPKEFLLELAQEKNKQPLPLIPEKYGIRLP 115          
The following BLAST results are available for this feature:
BLAST of NO28G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013421558.11.300e-1040.38transcription initiation factor TFIID subunit 9B [... [more]
XP_014664533.11.300e-1037.50PREDICTED: transcription initiation factor TFIID s... [more]
PVD34379.11.700e-1036.54hypothetical protein C0Q70_05651 [Pomacea canalicu... [more]
XP_009044402.12.200e-1034.38hypothetical protein LOTGIDRAFT_109218 [Lottia gig... [more]
XP_014775809.13.800e-1038.46PREDICTED: transcription initiation factor TFIID s... [more]
XP_014236467.18.400e-1037.50transcription initiation factor TFIID subunit 9-li... [more]
XP_002599712.12.400e-936.44hypothetical protein BRAFLDRAFT_272379 [Branchiost... [more]
XP_019623446.12.400e-936.44PREDICTED: transcription initiation factor TFIID s... [more]
XP_014220061.15.400e-937.50transcription initiation factor TFIID subunit 9 [C... [more]
OBZ88012.15.400e-935.92Transcription initiation factor TFIID subunit 9 [C... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00480.1NO28G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606668gene_9149Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00480.1NO28G00480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00480 ID=NO28G00480|Name=NO28G00480|organism=Nannochloropsis oceanica|type=gene|length=1651bp
GGCAGCCCCGTTGCTTTCCTGTCTCTCTGCCAGCCAGCCCCGGTCGTCTT
CTTCACTTCTTCACCCGCCACTACACGCACAACATGATGAACGAAACGCA
GCTCGCCGCTGCGGTCTTGGCCTCGATGGGCGTGGAGGACTACGACCCCA
AAGTCACTGGGTTGCTGGCCGAGTACTTGCGTCgtaagtgctgcagttgc
tggtgcttggaagacgacagcagggaaaggggacagaggggtagagaagc
tgtagaggccactgctctgcataaatcactcccactgcaccttcaccaca
ctcatctcaccgatgtatgaattcccttctcacacacgcactcctagGCA
ATGTGAACGACCTACTGACGGAATCATTGGACTACGCCCAGTATGCAAGA
CGCAAGgtgagatacagacaaggagggtgacaacacgctaaggcaccatt
tcgcccctccctcccttccctcccttcccccctcccttcctttctttcac
ttggacaaaaatatgtgctgtcgccgtctacagggcgaatttctaccgaa
aatcgaggtgctctttcccagtctgttcacggctccatcttacatttact
tccttccctccctctttcccttcctcctttccacagCACATTGACATATC
AGACGCCCGCCTCGCCGCTCAGGCCAAGGATACCTTCAGTAGCTCCTCGC
CAATCCCTCCACGTGACgtaagtcctttcctccctcctctctcccttcct
cctctctctcttccttccaccctccttccgtctctccctccctcttcgct
ttctctaccatgtatccctcttctcccttccctccctcctccctccctcc
ttctctcccaacccctctgcagCGCATGGTGCAAGTCGCCGCCGTCATCA
ACAGTCAGAAACTGGAGCCCTTTCCTCCTTCCTTCACGCCCTCCCTCCCG
CCCTTAAGCCAGGCTGCGGGAGACGAGCTCCTTGCCAACGACTATGTGGC
TGGCACTCCCCGATCCATCTCTTTGCTGTCCCGGGAGGGGGAAGGGGTGG
AAGGAGGGATGGAGGTGGAGGAGGAAGAGGGTGTAAGGGAGGGAGGAAGT
GGGACAGGGGAGGAGGCGGCGCCGGCCAGGATGGCGAGGAGGGGGGAGAA
GAACTTGAGGTTGATGATGAGTGGTGGAGGAGGAGGAGGAAGAGGAGGGG
GGAGGACGGGGCAGAGACCGGAGGAGGAGTGGTGTGAGGGAGGGAAGGTG
GGAGTATAGATCAAGAGAAAGAAAAGAAATATATGTAAGGTCGGGGCTAT
GCAGCTGATGTTGAAGTGATGGTGGCTCTTCTCCTTCTTCCCCTCCTCTT
CTCCTTGTGATTCTTTTCCTTCTTTTTCCTCTTCTTATTTCTCTATTCTT
TCTTCCTCAACTTCGCTTTTTTTTCTTATTCTCCTTTATCTTCACCCTCG
TCTTCTTCTCTATTTCCTTTCGCCCAACTCCTGCCTCCTGTCGTGCAATC
TCACTGCCTATCCCCTCTTCTCTGACTCATACATCTATTCACATCCCTCT
GATGGCTTCCCTCCGGATTTCTTAGTTTTTGCTCTACAGTTTCTTGACTC
CCTGCTCGCTCTCATTTTTGAAATTCCCTCGTCCCCACCACCTCTGCCCG
A
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protein sequence of NO28G00480.1

>NO28G00480.1-protein ID=NO28G00480.1-protein|Name=NO28G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MMNETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYA
RRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPS
FTPSLPPLSQAAGDELLANDYVAGTPRSISLLSREGEGVEGGMEVEEEEG
VREGGSGTGEEAAPARMARRGEKNLRLMMSGGGGGGRGGGRTGQRPEEEW
CEGGKVGV*
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Synonyms
Publications