NO28G00480, NO28G00480 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_013421558.1 (transcription initiation factor TFIID subunit 9B [Lingula anatina]) HSP 1 Score: 76.3 bits (186), Expect = 1.300e-10 Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108 + Q+ A++L MGV DY+P+V + E+ R V D+L ++ YA +A +K+ID D +LA Q K S ++P PP+D +++VA NSQ L P P LPP Sbjct: 11 DAQVMASILKDMGVTDYEPRVINQMLEFTYRYVTDVLDDAKVYANHAGKKNIDTEDVKLAIQCKLDHSYTTP-PPKDLLMEVAKHRNSQSLPLIKPYTGPKLPP 113
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_014664533.1 (PREDICTED: transcription initiation factor TFIID subunit 9B-like, partial [Priapulus caudatus]) HSP 1 Score: 76.3 bits (186), Expect = 1.300e-10 Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108 + Q+ A+L M V DY+P+V + E+ R + +L ++ Y YA+RK++D D +LA Q++ FS +SP PPRD +++++ NSQ L P P LPP Sbjct: 10 DAQVMQAILRDMAVTDYEPRVVNQMLEFTYRYITGILDDARVYQNYAKRKNLDFQDVKLAIQSRMDFSFTSP-PPRDLVIELSRQKNSQPLPIIKPHTGPKLPP 112
BLAST of NO28G00480 vs. NCBI_GenBank
Match: PVD34379.1 (hypothetical protein C0Q70_05651 [Pomacea canaliculata]) HSP 1 Score: 75.9 bits (185), Expect = 1.700e-10 Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108 + Q+ +A+L MGV +Y+PK+ + E+ R + D+L ++ YA +A +K+ID D +LA Q++ S ++P PPRD ++ + NSQ L P +P LPP Sbjct: 12 DAQVMSAILKDMGVLEYEPKLVNQMLEFTFRYITDILDDAKVYASHANKKNIDADDVKLAVQSRTDHSFTNP-PPRDLLLDICRQKNSQPLSAIKPYSSPRLPP 114
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_009044402.1 (hypothetical protein LOTGIDRAFT_109218 [Lottia gigantea] >ESP04893.1 hypothetical protein LOTGIDRAFT_109218 [Lottia gigantea]) HSP 1 Score: 75.5 bits (184), Expect = 2.200e-10 Identity = 44/128 (34.38%), Postives = 72/128 (56.25%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPPLSQAAGDELLANDYVAGTPRSISL 132 + Q+ AA+L MGV +Y+P++ + E+ R V D+L ++ Y+ +A +K ID+ D +LA Q K S ++P PPRD ++ ++ N+Q+L P P LPP L A +Y T + +SL Sbjct: 11 DAQVMAAILKDMGVVEYEPRIINQMLEFSYRYVTDILDDAKIYSSHANKKTIDVDDVKLAVQCKMDHSFTAP-PPRDLLMDISRHKNNQQLPLIKPYTGPRLPPDRYC----LSAPNYKLKTAKKVSL 133
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_014775809.1 (PREDICTED: transcription initiation factor TFIID subunit 9B-like [Octopus bimaculoides] >KOF83643.1 hypothetical protein OCBIM_22023437mg [Octopus bimaculoides]) HSP 1 Score: 74.7 bits (182), Expect = 3.800e-10 Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108 + Q+ AA+L MGV+DY+P+ + E+ R V D+L +S Y+ +A +K+ID D RLA Q + + ++P PPRD ++++ NSQ L P P LPP Sbjct: 10 DAQVMAAILKDMGVQDYEPRCINQMLEFAYRYVTDVLDDSKVYSSHASKKNIDGDDVRLAIQCRMDHTFTTP-PPRDLLMEIVRTKNSQPLPLIKPYSGPRLPP 112
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_014236467.1 (transcription initiation factor TFIID subunit 9-like [Trichogramma pretiosum]) HSP 1 Score: 73.6 bits (179), Expect = 8.400e-10 Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108 + Q+ +++ MG+ +Y+PKV L E+ R V+ +L +S YA +A++K ID+ D +LAA+ + S ++P PPR+ ++ VA V N + L P PS+ LPP Sbjct: 16 DAQVILSIMKDMGISEYEPKVINQLLEFTYRYVHTILEDSKVYANHAKKKTIDVEDVQLAAKMQMEKSFTNP-PPREVLMDVAKVKNVEPLPPVKPSYGLRLPP 118
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_002599712.1 (hypothetical protein BRAFLDRAFT_272379 [Branchiostoma floridae] >EEN55724.1 hypothetical protein BRAFLDRAFT_272379 [Branchiostoma floridae]) HSP 1 Score: 72.0 bits (175), Expect = 2.400e-9 Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPPLSQAAGDELLANDY 122 + Q+ AAVL MGV DY+P+V + E+ R V D+ + Y+ +A++K +D SD +LA + S ++P PPRD ++++A NS L P P LPP LL+N+Y Sbjct: 10 DAQVMAAVLKDMGVTDYEPRVINQMLEFTYRYVTDIFENARVYSTFAKKKEMDTSDVKLAIRHNSDHSFATP-PPRDFLMEIARQKNSTPLPLIKPYGGPRLPPDRYC----LLSNNY 122
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_019623446.1 (PREDICTED: transcription initiation factor TFIID subunit 9-like [Branchiostoma belcheri]) HSP 1 Score: 72.0 bits (175), Expect = 2.400e-9 Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPPLSQAAGDELLANDY 122 + Q+ AAVL MGV DY+P+V + E+ R V D+ + Y+ +A++K +D SD +LA + S ++P PPRD ++++A NS L P P LPP LL+N+Y Sbjct: 10 DAQVMAAVLKDMGVTDYEPRVINQMLEFTYRYVTDIFENARVYSTFAKKKEMDTSDVKLAIRHNSDHSFATP-PPRDFLMEIARQKNSTPLPLIKPYGGPRLPPDRYC----LLSNNY 122
BLAST of NO28G00480 vs. NCBI_GenBank
Match: XP_014220061.1 (transcription initiation factor TFIID subunit 9 [Copidosoma floridanum]) HSP 1 Score: 70.9 bits (172), Expect = 5.400e-9 Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108 + Q+ +++ MG+ DY+PKV L E+ R V +L +S YA + ++K ID+ D RLA + + S ++P PPR+ +++VA V NS L PS+ LPP Sbjct: 17 DAQVIVSIMKDMGITDYEPKVINQLLEFTYRYVTCILDDSKVYANHGKKKLIDLDDVRLAVKMQTEKSFTNP-PPREVLIEVAKVKNSTPLPFVKPSYGLRLPP 119
BLAST of NO28G00480 vs. NCBI_GenBank
Match: OBZ88012.1 (Transcription initiation factor TFIID subunit 9 [Choanephora cucurbitarum]) HSP 1 Score: 70.9 bits (172), Expect = 5.400e-9 Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 0 Query: 4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLP 107 + ++ + +L S+GVEDYDPKV L E+ R +D+ +SL YA++A + ID+ D +LA Q + S ++P PP++ ++++A N Q L P + LP Sbjct: 14 DARIVSLILQSLGVEDYDPKVVHQLLEFAHRYTSDVFQDSLVYAEHANKTDIDLEDIQLAIQGRVNHSFTTP-PPKEFLLELAQEKNKQPLPLIPEKYGIRLP 115 The following BLAST results are available for this feature:
BLAST of NO28G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G00480 ID=NO28G00480|Name=NO28G00480|organism=Nannochloropsis oceanica|type=gene|length=1651bpback to top protein sequence of NO28G00480.1 >NO28G00480.1-protein ID=NO28G00480.1-protein|Name=NO28G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bpback to top Synonyms
Publications
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