NO28G00480.1, NO28G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00480.1
Unique NameNO28G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1102
Alignment locationchr28:174877..176527 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:174877..176527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00480.1 vs.
Match: XP_014664533.1 (PREDICTED: transcription initiation factor TFIID subunit 9B-like, partial [Priapulus caudatus])

HSP 1 Score: 76.3 bits (186), Expect = 1.300e-10
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 0 
Query:    4 ETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYARRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPSFTPSLPP 108
            + Q+  A+L  M V DY+P+V   + E+  R +  +L ++  Y  YA+RK++D  D +LA Q++  FS +SP PPRD +++++   NSQ L    P   P LPP
Sbjct:   10 DAQVMQAILRDMAVTDYEPRVVNQMLEFTYRYITGILDDARVYQNYAKRKNLDFQDVKLAIQSRMDFSFTSP-PPRDLVIELSRQKNSQPLPIIKPHTGPKLPP 112
The following BLAST results are available for this feature:
BLAST of NO28G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_014664533.11.300e-1037.50PREDICTED: transcription initiation factor TFIID s... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00480NO28G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00480.1NO28G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00480.1.cds1NO28G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00480.1.cds2NO28G00480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00480.1.cds3NO28G00480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00480.1.cds4NO28G00480.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00480.1 ID=NO28G00480.1|Name=NO28G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1102bp
GGCAGCCCCGTTGCTTTCCTGTCTCTCTGCCAGCCAGCCCCGGTCGTCTT
CTTCACTTCTTCACCCGCCACTACACGCACAACATGATGAACGAAACGCA
GCTCGCCGCTGCGGTCTTGGCCTCGATGGGCGTGGAGGACTACGACCCCA
AAGTCACTGGGTTGCTGGCCGAGTACTTGCGTCGCAATGTGAACGACCTA
CTGACGGAATCATTGGACTACGCCCAGTATGCAAGACGCAAGCACATTGA
CATATCAGACGCCCGCCTCGCCGCTCAGGCCAAGGATACCTTCAGTAGCT
CCTCGCCAATCCCTCCACGTGACCGCATGGTGCAAGTCGCCGCCGTCATC
AACAGTCAGAAACTGGAGCCCTTTCCTCCTTCCTTCACGCCCTCCCTCCC
GCCCTTAAGCCAGGCTGCGGGAGACGAGCTCCTTGCCAACGACTATGTGG
CTGGCACTCCCCGATCCATCTCTTTGCTGTCCCGGGAGGGGGAAGGGGTG
GAAGGAGGGATGGAGGTGGAGGAGGAAGAGGGTGTAAGGGAGGGAGGAAG
TGGGACAGGGGAGGAGGCGGCGCCGGCCAGGATGGCGAGGAGGGGGGAGA
AGAACTTGAGGTTGATGATGAGTGGTGGAGGAGGAGGAGGAAGAGGAGGG
GGGAGGACGGGGCAGAGACCGGAGGAGGAGTGGTGTGAGGGAGGGAAGGT
GGGAGTATAGATCAAGAGAAAGAAAAGAAATATATGTAAGGTCGGGGCTA
TGCAGCTGATGTTGAAGTGATGGTGGCTCTTCTCCTTCTTCCCCTCCTCT
TCTCCTTGTGATTCTTTTCCTTCTTTTTCCTCTTCTTATTTCTCTATTCT
TTCTTCCTCAACTTCGCTTTTTTTTCTTATTCTCCTTTATCTTCACCCTC
GTCTTCTTCTCTATTTCCTTTCGCCCAACTCCTGCCTCCTGTCGTGCAAT
CTCACTGCCTATCCCCTCTTCTCTGACTCATACATCTATTCACATCCCTC
TGATGGCTTCCCTCCGGATTTCTTAGTTTTTGCTCTACAGTTTCTTGACT
CCCTGCTCGCTCTCATTTTTGAAATTCCCTCGTCCCCACCACCTCTGCCC
GA
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protein sequence of NO28G00480.1

>NO28G00480.1-protein ID=NO28G00480.1-protein|Name=NO28G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MMNETQLAAAVLASMGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYA
RRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPS
FTPSLPPLSQAAGDELLANDYVAGTPRSISLLSREGEGVEGGMEVEEEEG
VREGGSGTGEEAAPARMARRGEKNLRLMMSGGGGGGRGGGRTGQRPEEEW
CEGGKVGV*
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mRNA from alignment at chr28:174877..176527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00480.1 ID=NO28G00480.1|Name=NO28G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1651bp|location=Sequence derived from alignment at chr28:174877..176527+ (Nannochloropsis oceanica)
GGCAGCCCCGTTGCTTTCCTGTCTCTCTGCCAGCCAGCCCCGGTCGTCTT
CTTCACTTCTTCACCCGCCACTACACGCACAACATGATGAACGAAACGCA
GCTCGCCGCTGCGGTCTTGGCCTCGATGGGCGTGGAGGACTACGACCCCA
AAGTCACTGGGTTGCTGGCCGAGTACTTGCGTCGTAAGTGCTGCAGTTGC
TGGTGCTTGGAAGACGACAGCAGGGAAAGGGGACAGAGGGGTAGAGAAGC
TGTAGAGGCCACTGCTCTGCATAAATCACTCCCACTGCACCTTCACCACA
CTCATCTCACCGATGTATGAATTCCCTTCTCACACACGCACTCCTAGGCA
ATGTGAACGACCTACTGACGGAATCATTGGACTACGCCCAGTATGCAAGA
CGCAAGGTGAGATACAGACAAGGAGGGTGACAACACGCTAAGGCACCATT
TCGCCCCTCCCTCCCTTCCCTCCCTTCCCCCCTCCCTTCCTTTCTTTCAC
TTGGACAAAAATATGTGCTGTCGCCGTCTACAGGGCGAATTTCTACCGAA
AATCGAGGTGCTCTTTCCCAGTCTGTTCACGGCTCCATCTTACATTTACT
TCCTTCCCTCCCTCTTTCCCTTCCTCCTTTCCACAGCACATTGACATATC
AGACGCCCGCCTCGCCGCTCAGGCCAAGGATACCTTCAGTAGCTCCTCGC
CAATCCCTCCACGTGACGTAAGTCCTTTCCTCCCTCCTCTCTCCCTTCCT
CCTCTCTCTCTTCCTTCCACCCTCCTTCCGTCTCTCCCTCCCTCTTCGCT
TTCTCTACCATGTATCCCTCTTCTCCCTTCCCTCCCTCCTCCCTCCCTCC
TTCTCTCCCAACCCCTCTGCAGCGCATGGTGCAAGTCGCCGCCGTCATCA
ACAGTCAGAAACTGGAGCCCTTTCCTCCTTCCTTCACGCCCTCCCTCCCG
CCCTTAAGCCAGGCTGCGGGAGACGAGCTCCTTGCCAACGACTATGTGGC
TGGCACTCCCCGATCCATCTCTTTGCTGTCCCGGGAGGGGGAAGGGGTGG
AAGGAGGGATGGAGGTGGAGGAGGAAGAGGGTGTAAGGGAGGGAGGAAGT
GGGACAGGGGAGGAGGCGGCGCCGGCCAGGATGGCGAGGAGGGGGGAGAA
GAACTTGAGGTTGATGATGAGTGGTGGAGGAGGAGGAGGAAGAGGAGGGG
GGAGGACGGGGCAGAGACCGGAGGAGGAGTGGTGTGAGGGAGGGAAGGTG
GGAGTATAGATCAAGAGAAAGAAAAGAAATATATGTAAGGTCGGGGCTAT
GCAGCTGATGTTGAAGTGATGGTGGCTCTTCTCCTTCTTCCCCTCCTCTT
CTCCTTGTGATTCTTTTCCTTCTTTTTCCTCTTCTTATTTCTCTATTCTT
TCTTCCTCAACTTCGCTTTTTTTTCTTATTCTCCTTTATCTTCACCCTCG
TCTTCTTCTCTATTTCCTTTCGCCCAACTCCTGCCTCCTGTCGTGCAATC
TCACTGCCTATCCCCTCTTCTCTGACTCATACATCTATTCACATCCCTCT
GATGGCTTCCCTCCGGATTTCTTAGTTTTTGCTCTACAGTTTCTTGACTC
CCTGCTCGCTCTCATTTTTGAAATTCCCTCGTCCCCACCACCTCTGCCCG
A
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Coding sequence (CDS) from alignment at chr28:174877..176527+

>NO28G00480.1 ID=NO28G00480.1|Name=NO28G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at chr28:174877..176527+ (Nannochloropsis oceanica)
ATGATGAACGAAACGCAGCTCGCCGCTGCGGTCTTGGCCTCGATGGGCGT
GGAGGACTACGACCCCAAAGTCACTGGGTTGCTGGCCGAGTACTTGCGTC
GCAATGTGAACGACCTACTGACGGAATCATTGGACTACGCCCAGTATGCA
AGACGCAAGCACATTGACATATCAGACGCCCGCCTCGCCGCTCAGGCCAA
GGATACCTTCAGTAGCTCCTCGCCAATCCCTCCACGTGACCGCATGGTGC
AAGTCGCCGCCGTCATCAACAGTCAGAAACTGGAGCCCTTTCCTCCTTCC
TTCACGCCCTCCCTCCCGCCCTTAAGCCAGGCTGCGGGAGACGAGCTCCT
TGCCAACGACTATGTGGCTGGCACTCCCCGATCCATCTCTTTGCTGTCCC
GGGAGGGGGAAGGGGTGGAAGGAGGGATGGAGGTGGAGGAGGAAGAGGGT
GTAAGGGAGGGAGGAAGTGGGACAGGGGAGGAGGCGGCGCCGGCCAGGAT
GGCGAGGAGGGGGGAGAAGAACTTGAGGTTGATGATGAGTGGTGGAGGAG
GAGGAGGAAGAGGAGGGGGGAGGACGGGGCAGAGACCGGAGGAGGAGTGG
TGTGAGGGAGGGAAGGTGGGAGTATAG
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Synonyms
Publications