NO28G00440, NO28G00440 (gene) Nannochloropsis oceanica

Overview
NameNO28G00440
Unique NameNO28G00440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length903
Alignment locationchr28:164864..165766 -

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Properties
Property NameValue
DescriptionQueuine tRNA-ribosyltransferase accessory subunit 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:164864..165766 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006400tRNA modification
GO:0101030tRNA-guanine transglycosylation
GO:0008616queuosine biosynthetic process
GO:0008033tRNA processing
GO:0006400tRNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0016763transferase activity, transferring pentosyl groups
GO:0046872metal ion binding
GO:0016763transferase activity, transferring pentosyl groups
GO:0016757transferase activity, transferring glycosyl groups
GO:0016740transferase activity
GO:0008479queuine tRNA-ribosyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR036511TGT-like_sf
IPR002616tRNA_ribo_trans-like
Homology
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: WP_069178345.1 (tRNA guanosine(34) transglycosylase Tgt [Anaerolineaceae bacterium oral taxon 439] >AOH43106.1 tRNA guanosine(34) transglycosylase Tgt [Anaerolineaceae bacterium oral taxon 439])

HSP 1 Score: 101.3 bits (251), Expect = 5.400e-18
Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 0 
Query:   98 GVVLGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRY 292
            G+ +GGL +GET A  ++  + +   LP +  R  + G G  ED++  +  GVD+  C LP  L R G A+  R +                                           +NL +R++R D R L EGC C ACR  HSRAYIHHL  CRE L   +L +HN+  ++ +  +ARK +L G+ D++
Sbjct:  211 GIAIGGLSVGETKAQMIATLDALTPILPEARPRY-LMGVGSPEDLVQGIRRGVDIFDCVLPTRLARHGAAMTRRGQ-------------------------------------------MNLVNRQYRDDPRPLVEGCQCYACRN-HSRAYIHHLFRCRENLSGTLLSIHNIHTLITIVRDARKAILAGTYDQF 359
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: OQR93586.1 (queuine tRNA-ribosyltransferase domain-containing protein [Achlya hypogyna])

HSP 1 Score: 99.0 bits (245), Expect = 2.700e-17
Identity = 84/294 (28.57%), Postives = 125/294 (42.52%), Query Frame = 0 
Query:    3 VSIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAAR----LSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRYR 293
            +++ DE        RQQ AVE +  W+++                       R     +L  +VGG++ ++R  SV+ T+ +           I GV + G G GET A R    LS   TV ++LP   L +     G   DVL++V  GVD      PL++T+  +ALV    NE   +                                     INL D+++ +DAR L  GC C AC   HSRAYI+HLL   E+L +V+L++HN+          R  +  G+ +RYR
Sbjct:  129 LALADEVDPTFGYKRQQTAVETSIAWLDE-------------------CIAARPADTPVLGVLVGGNEPRLRDISVKETVKR----------AIDGVAISGFGGGETQAFREATLLSYQTTVPAALPRLLLNI-----GQPLDVLASVGLGVDAFMSSYPLIVTKFAYALVFWTDNESTAEAMETTK-------------------------------INLRDKQYERDARPLLPGCSCFAC-ARHSRAYINHLLNVHEMLADVLLYMHNMHHYYAFFAAIRASIANGTFERYR 356
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: XP_008619840.1 (hypothetical protein SDRG_15446 [Saprolegnia diclina VS20] >EQC26716.1 hypothetical protein SDRG_15446 [Saprolegnia diclina VS20])

HSP 1 Score: 98.6 bits (244), Expect = 3.500e-17
Identity = 85/295 (28.81%), Postives = 126/295 (42.71%), Query Frame = 0 
Query:    4 SIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAAR---LSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALV---GRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRYR 293
            ++ DE        RQQ AVE +  W++                   +    R K   +   +VGG++ ++R+ SV  T  +          PI GVV+ G G GETAA R   L  Y T +    P+ L   +   G   DVL++V+ GVD      PLL+T+  +ALV   G    E  +                                      INL D+++ +DA+ L  GC C AC T HSRAYI+HLL   E+L +V+L++HN+          R ++  G+ + YR
Sbjct:  128 ALADEVDPTFGYKRQQTAVETSLTWLD-------------------ACLAARPKDTPIFGVLVGGNEPRLRAISVTETCKR----------PIDGVVIAGFGGGETAAFREETLVQYQTQV----PASLPRILLNVGQPLDVLASVSLGVDAFLSSYPLLVTKFSYALVFWIGDTSTEAMESTK-----------------------------------INLRDKQYERDAKPLLPGCTCFAC-TRHSRAYINHLLNVHEMLADVLLYMHNMHHYYAFFRTIRDQIAAGTFEAYR 353
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: GAQ82287.1 (Queuine/other tRNA-ribosyltransferase [Klebsormidium nitens])

HSP 1 Score: 98.2 bits (243), Expect = 4.600e-17
Identity = 82/291 (28.18%), Postives = 119/291 (40.89%), Query Frame = 0 
Query:    3 VSIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRYRQ 294
            V + D+ P  + R R +++V+R+  W+++              E  K    I          + GGS+L  R  S   T  +           + G  LGG GLGE+   R ++    I  LPPS  R  V+G    E++L  VAAGVD+     PL LT  G A+   V +E  + G                                    +NL     R+D R L  GC C  CR  H+RAY+HHLL   E+L +V+L +HN           R+ ++    DR+RQ
Sbjct:  164 VPLADDIPSTSGRKRVKQSVDRSLSWLDECI------------ERNKQGIPI-------FGSVQGGSNLYERPRSAEETAVR----------DVAGFHLGGFGLGESFDERPTLLAAAIDKLPPSKPR-HVSGLSVPEEILQGVAAGVDLFDSAYPLSLTLAGLAMTFPVSHESPEVGSADGIGSSGATEGEGPALGADCSK------------LNLLSLALREDPRPLLPGCQCYTCRN-HTRAYLHHLLNAHEMLAQVLLEIHNTHHYTRFFRAIRQSIIEDRFDRFRQ 411
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: XP_009525877.1 (hypothetical protein PHYSODRAFT_462492, partial [Phytophthora sojae] >EGZ16819.1 hypothetical protein PHYSODRAFT_462492, partial [Phytophthora sojae])

HSP 1 Score: 95.9 bits (237), Expect = 2.300e-16
Identity = 74/299 (24.75%), Postives = 121/299 (40.47%), Query Frame = 0 
Query:    1 MAVSIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRYRQFIQSIF 300
            + V + DE P +  R R + AV+ +  W++    L            G    G+          +VGG+D  +R  S   T  +           I  ++L GLG     A RL + + ++S + P+ L   V G G   DVL  V  G+D    P P  +T+ G AL+  + ++                                        +++L ++++  D   L  GC C AC+  ++RAYIHHLL  RE+LG+++L++HNL+       E R  +     + Y     S F
Sbjct:  129 LVVPLADEIPVEKGRNRHRAAVQTSLDWLDACQAL---------NTSGTPMCGV----------VVGGNDQTLRRMSAGETCKR----------DIQAILLSGLGACSDKAERLELIDAIVSEVTPASLPRIVTGIGHPLDVLDTVNRGIDAFVSPYPATVTKAGSALIFWISDD----------------------EDAGSASDRNAERERSGGVLHLREKRFATDFGPLMAGCDCFACQ-KYTRAYIHHLLNVREMLGDILLYLHNLQHYYRFFREIRTSINTERFEAYHAEFASRF 375
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: GAY59510.1 (hypothetical protein CUMW_195000 [Citrus unshiu])

HSP 1 Score: 95.5 bits (236), Expect = 3.000e-16
Identity = 79/295 (26.78%), Postives = 127/295 (43.05%), Query Frame = 0 
Query:    4 SIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRY-RQFIQS 298
            ++ DE P  A+  R + +V+RT +W+++      + +S  GG               +   IVGGS+++ R    +           +    + G  +GG GLGE+   R S+ N V  +LP  W RM + G G  E+VL  VAAGVD+        LT  G AL   +    + D                                     INL    +RKDA  + E C C  C+  H++AYI+HLL   E+L +++L +HN    +      R+ +  G  +++ ++F+QS
Sbjct:  145 TLADEVPAWANNKRNKTSVDRTVKWLDEC-----IARSPAGGA--------------VFGSIVGGSNIEERKRCAQ----------EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKND-----------------------YNYQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQN-HTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQS 385
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: XP_004983407.1 (queuine tRNA-ribosyltransferase accessory subunit 2 [Setaria italica] >KQK89531.1 hypothetical protein SETIT_036028mg [Setaria italica])

HSP 1 Score: 95.1 bits (235), Expect = 3.900e-16
Identity = 83/290 (28.62%), Postives = 121/290 (41.72%), Query Frame = 0 
Query:    4 SIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRYRQ 294
            S+ DE P   +  R + +V+RT RW++    L            G +S G           IVGGS ++ R    RL   ++A         + G  +GG GLG+    R S+ N V   LPP   R+ V+  G  E+VL  VAAG+D+        LT  G AL+  V   GR+                                      INL    +RKD   L + C C  C+  H+RAY++HLL   E+L +++L +HN    +      R+ + VG  D +RQ
Sbjct:  144 SLADEVPAWVTEKRNKTSVDRTLRWLDACIAL--------DAAAGANSFGF----------IVGGSSIEQR----RLCATEVA------KRNVSGFWIGGFGLGDDIEERCSLLNAVTDCLPPEKPRL-VSRLGLPEEVLEGVAAGIDLFDSTYIYQLTMGGFALIFPVDMVGRE-----------------------MQNGLFNNDGGDSTKINLRATTYRKDTSRLVDSCSCFTCQN-HTRAYLNHLLNVHEMLAQILLEIHNTHHYLRFFRSIREAINVGEFDVFRQ 380
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: XP_008906598.1 (hypothetical protein PPTG_12127 [Phytophthora parasitica INRA-310] >ETI45873.1 hypothetical protein F443_09661 [Phytophthora parasitica P1569] >ETK85828.1 hypothetical protein L915_09455 [Phytophthora parasitica] >ETL39257.1 hypothetical protein L916_09356 [Phytophthora parasitica] >ETM45674.1 hypothetical protein L914_09319 [Phytophthora parasitica] >ETN08310.1 hypothetical protein PPTG_12127 [Phytophthora parasitica INRA-310] >ETO74544.1 hypothetical protein F444_09725 [Phytophthora parasitica P1976] >ETP15704.1 hypothetical protein F441_09588 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 95.1 bits (235), Expect = 3.900e-16
Identity = 72/280 (25.71%), Postives = 119/280 (42.50%), Query Frame = 0 
Query:    1 MAVSIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEAR 281
            + V + DE P D  R R + AV+ +  W++                   +   +      +   +VGG+D  +R  S   T  +           I  ++L GLG     A RL + + ++S + P+ L   V G G   DVL  V  G+DV   P P  +T+ G AL+  + ++  +DG                                   +++L ++++  D   L  GC C AC+  ++RAYIHHLL  RE+LG+++L++HNL+       E R
Sbjct:  166 LVVPLADEIPSDKGRNRHRAAVQTSLDWLD-------------------ACQSLNTSLTPICGVVVGGNDHTLRRMSAGETCKR----------DIQAILLSGLGSCTDRAKRLELIDAIVSEITPASLPRVVTGIGHPLDVLDTVNRGIDVFVSPYPASITKAGSALIFWISDD--EDG--------------------GSASERNAERECSGGVLHLREKRFATDFGPLMAGCDCFACQ-KYTRAYIHHLLNVREMLGDILLYLHNLQHYYRFFREIR 393
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: XP_008906599.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETI45874.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK85829.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL39258.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM45675.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN08311.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETO74545.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP15705.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 95.1 bits (235), Expect = 3.900e-16
Identity = 72/280 (25.71%), Postives = 119/280 (42.50%), Query Frame = 0 
Query:    1 MAVSIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEAR 281
            + V + DE P D  R R + AV+ +  W++                   +   +      +   +VGG+D  +R  S   T  +           I  ++L GLG     A RL + + ++S + P+ L   V G G   DVL  V  G+DV   P P  +T+ G AL+  + ++  +DG                                   +++L ++++  D   L  GC C AC+  ++RAYIHHLL  RE+LG+++L++HNL+       E R
Sbjct:  147 LVVPLADEIPSDKGRNRHRAAVQTSLDWLD-------------------ACQSLNTSLTPICGVVVGGNDHTLRRMSAGETCKR----------DIQAILLSGLGSCTDRAKRLELIDAIVSEITPASLPRVVTGIGHPLDVLDTVNRGIDVFVSPYPASITKAGSALIFWISDD--EDG--------------------GSASERNAERECSGGVLHLREKRFATDFGPLMAGCDCFACQ-KYTRAYIHHLLNVREMLGDILLYLHNLQHYYRFFREIR 374
[Close]
BLAST of NO28G00440 vs. NCBI_GenBank
Match: XP_008906600.1 (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETI45875.1 hypothetical protein, variant 2 [Phytophthora parasitica P1569] >ETK85830.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL39259.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETM45676.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETN08312.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETO74546.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETP15706.1 hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 95.1 bits (235), Expect = 3.900e-16
Identity = 72/280 (25.71%), Postives = 119/280 (42.50%), Query Frame = 0 
Query:    1 MAVSIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEAR 281
            + V + DE P D  R R + AV+ +  W++                   +   +      +   +VGG+D  +R  S   T  +           I  ++L GLG     A RL + + ++S + P+ L   V G G   DVL  V  G+DV   P P  +T+ G AL+  + ++  +DG                                   +++L ++++  D   L  GC C AC+  ++RAYIHHLL  RE+LG+++L++HNL+       E R
Sbjct:   27 LVVPLADEIPSDKGRNRHRAAVQTSLDWLD-------------------ACQSLNTSLTPICGVVVGGNDHTLRRMSAGETCKR----------DIQAILLSGLGSCTDRAKRLELIDAIVSEITPASLPRVVTGIGHPLDVLDTVNRGIDVFVSPYPASITKAGSALIFWISDD--EDG--------------------GSASERNAERECSGGVLHLREKRFATDFGPLMAGCDCFACQ-KYTRAYIHHLLNVREMLGDILLYLHNLQHYYRFFREIR 254
The following BLAST results are available for this feature:
BLAST of NO28G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_069178345.15.400e-1831.96tRNA guanosine(34) transglycosylase Tgt [Anaerolin... [more]
OQR93586.12.700e-1728.57queuine tRNA-ribosyltransferase domain-containing ... [more]
XP_008619840.13.500e-1728.81hypothetical protein SDRG_15446 [Saprolegnia dicli... [more]
GAQ82287.14.600e-1728.18Queuine/other tRNA-ribosyltransferase [Klebsormidi... [more]
XP_009525877.12.300e-1624.75hypothetical protein PHYSODRAFT_462492, partial [P... [more]
GAY59510.13.000e-1626.78hypothetical protein CUMW_195000 [Citrus unshiu][more]
XP_004983407.13.900e-1628.62queuine tRNA-ribosyltransferase accessory subunit ... [more]
XP_008906598.13.900e-1625.71hypothetical protein PPTG_12127 [Phytophthora para... [more]
XP_008906599.13.900e-1625.71hypothetical protein, variant 1 [Phytophthora para... [more]
XP_008906600.13.900e-1625.71hypothetical protein, variant 2 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00440.1NO28G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00440.1NO28G00440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00440 ID=NO28G00440|Name=NO28G00440|organism=Nannochloropsis oceanica|type=gene|length=903bp
ATGGCAGTATCCATCATGGACGAGGCTCCCGAAGACGCTAGTAGAACAAG
ACAACAAAAGGCTGTCGAACGCACAGCCAGGTGGGTTGAAGACCTCGCCC
TCCTTCCCTTCCTCCCTCAGTCAGAAGGAGGAGGGGAGGAAGGAAAATCC
AGCGCGGGAATACGTCGCAAGAGCCCTTTCTTGTTGGCTGGAATCGTGGG
AGGATCAGACCTGAAGATGCGCTCACACAGCGTCCGCCTCACCCTCGACA
AGATCGCCCTTCCTCCCTCCCTCCCTCCCTCCCCGATCCTCGGAGTTGTT
CTCGGTGGCCTGGGACTCGGCGAGACGGCGGCTGCTCGACTTTCTGTCTA
CAATACTGTCATTTCCTCGCTCCCTCCCTCCTGGCTTCGCATGGCGGTGG
CAGGGCAGGGAGGGATGGAGGACGTGCTGAGTGCGGTTGCCGCAGGAGTG
GATGTCGTCGCCTGCCCTTTACCGTTACTTTTAACGAGGGAGGGACATGC
GTTGGTGGGGAGGGTGAAGAATGAGGGTCGGAAGGATGGAAGGGAGGGGA
AAAGACGGCCGAGGAAGAGGACCCGGAGGGAGGAAGGTGTGAAGGGGGAA
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGATAAT
AAATTTATGGGATCGGAAATGGAGGAAGGACGCGAGGGCCTTAAGGGAAG
GGTGTGGGTGCCTCGCCTGCCGCACACCCCATTCTAGGGCGTATATCCAC
CATTTATTACTGTGTCGTGAGATACTCGGGGAGGTGGTGCTCTTTGTGCA
TAATCTCGAGTGGGTGGTGGAAATGGCCGAGGAAGCGAGGAAGGAGCTGC
TAGTGGGGTCCCTGGATAGATATAGACAGTTCATACAAAGTATTTTTGCA
TGA
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protein sequence of NO28G00440.1

>NO28G00440.1-protein ID=NO28G00440.1-protein|Name=NO28G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAVSIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKS
SAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVV
LGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGV
DVVACPLPLLLTREGHALVGRVKNEGRKDGREGKRRPRKRTRREEGVKGE
EEEEEEEEEEEEEEGIINLWDRKWRKDARALREGCGCLACRTPHSRAYIH
HLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRYRQFIQSIFA
*
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Synonyms
Publications