NO28G00440.1, NO28G00440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00440.1
Unique NameNO28G00440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length903
Alignment locationchr28:164864..165766 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:164864..165766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO28G00440.1 vs.
Match: OQR93586.1 (queuine tRNA-ribosyltransferase domain-containing protein [Achlya hypogyna])

HSP 1 Score: 97.4 bits (241), Expect = 7.800e-17
Identity = 85/294 (28.91%), Postives = 127/294 (43.20%), Query Frame = 0 
Query:    3 VSIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKSSAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVVLGGLGLGETAAAR----LSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGVDVVACPLPLLLTREGHALVGRVKNEGRKDGREGKRRPRKRTRREEGVKGEEEEEEEEEEEEEEEGIINLWDRKWRKDARALREGCGCLACRTPHSRAYIHHLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRYR 293
            +++ DE        RQQ AVE +  W+++                       R     +L  +VGG++ ++R  SV+ T+ +           I GV + G G GET A R    LS   TV ++LP   L +     G   DVL++V  GVD      PL++T+  +ALV    NE   +  E  +                               INL D+++ +DAR L  GC C AC   HSRAYI+HLL   E+L +V+L++HN+          R  +  G+ +RYR
Sbjct:  129 LALADEVDPTFGYKRQQTAVETSIAWLDECI-------------------AARPADTPVLGVLVGGNEPRLRDISVKETVKRA----------IDGVAISGFGGGETQAFREATLLSYQTTVPAALPRLLLNI-----GQPLDVLASVGLGVDAFMSSYPLIVTKFAYALVFWTDNESTAEAMETTK-------------------------------INLRDKQYERDARPLLPGCSCFACAR-HSRAYINHLLNVHEMLADVLLYMHNMHHYYAFFAAIRASIANGTFERYR 356
The following BLAST results are available for this feature:
BLAST of NO28G00440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR93586.17.800e-1728.91queuine tRNA-ribosyltransferase domain-containing ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00440NO28G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00440.1NO28G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00440.1.cds1NO28G00440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00440.1 ID=NO28G00440.1|Name=NO28G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=903bp
ATGGCAGTATCCATCATGGACGAGGCTCCCGAAGACGCTAGTAGAACAAG
ACAACAAAAGGCTGTCGAACGCACAGCCAGGTGGGTTGAAGACCTCGCCC
TCCTTCCCTTCCTCCCTCAGTCAGAAGGAGGAGGGGAGGAAGGAAAATCC
AGCGCGGGAATACGTCGCAAGAGCCCTTTCTTGTTGGCTGGAATCGTGGG
AGGATCAGACCTGAAGATGCGCTCACACAGCGTCCGCCTCACCCTCGACA
AGATCGCCCTTCCTCCCTCCCTCCCTCCCTCCCCGATCCTCGGAGTTGTT
CTCGGTGGCCTGGGACTCGGCGAGACGGCGGCTGCTCGACTTTCTGTCTA
CAATACTGTCATTTCCTCGCTCCCTCCCTCCTGGCTTCGCATGGCGGTGG
CAGGGCAGGGAGGGATGGAGGACGTGCTGAGTGCGGTTGCCGCAGGAGTG
GATGTCGTCGCCTGCCCTTTACCGTTACTTTTAACGAGGGAGGGACATGC
GTTGGTGGGGAGGGTGAAGAATGAGGGTCGGAAGGATGGAAGGGAGGGGA
AAAGACGGCCGAGGAAGAGGACCCGGAGGGAGGAAGGTGTGAAGGGGGAA
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGATAAT
AAATTTATGGGATCGGAAATGGAGGAAGGACGCGAGGGCCTTAAGGGAAG
GGTGTGGGTGCCTCGCCTGCCGCACACCCCATTCTAGGGCGTATATCCAC
CATTTATTACTGTGTCGTGAGATACTCGGGGAGGTGGTGCTCTTTGTGCA
TAATCTCGAGTGGGTGGTGGAAATGGCCGAGGAAGCGAGGAAGGAGCTGC
TAGTGGGGTCCCTGGATAGATATAGACAGTTCATACAAAGTATTTTTGCA
TGA
back to top

protein sequence of NO28G00440.1

>NO28G00440.1-protein ID=NO28G00440.1-protein|Name=NO28G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAVSIMDEAPEDASRTRQQKAVERTARWVEDLALLPFLPQSEGGGEEGKS
SAGIRRKSPFLLAGIVGGSDLKMRSHSVRLTLDKIALPPSLPPSPILGVV
LGGLGLGETAAARLSVYNTVISSLPPSWLRMAVAGQGGMEDVLSAVAAGV
DVVACPLPLLLTREGHALVGRVKNEGRKDGREGKRRPRKRTRREEGVKGE
EEEEEEEEEEEEEEGIINLWDRKWRKDARALREGCGCLACRTPHSRAYIH
HLLLCREILGEVVLFVHNLEWVVEMAEEARKELLVGSLDRYRQFIQSIFA
*
back to top

mRNA from alignment at chr28:164864..165766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00440.1 ID=NO28G00440.1|Name=NO28G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=903bp|location=Sequence derived from alignment at chr28:164864..165766- (Nannochloropsis oceanica)
ATGGCAGTATCCATCATGGACGAGGCTCCCGAAGACGCTAGTAGAACAAG
ACAACAAAAGGCTGTCGAACGCACAGCCAGGTGGGTTGAAGACCTCGCCC
TCCTTCCCTTCCTCCCTCAGTCAGAAGGAGGAGGGGAGGAAGGAAAATCC
AGCGCGGGAATACGTCGCAAGAGCCCTTTCTTGTTGGCTGGAATCGTGGG
AGGATCAGACCTGAAGATGCGCTCACACAGCGTCCGCCTCACCCTCGACA
AGATCGCCCTTCCTCCCTCCCTCCCTCCCTCCCCGATCCTCGGAGTTGTT
CTCGGTGGCCTGGGACTCGGCGAGACGGCGGCTGCTCGACTTTCTGTCTA
CAATACTGTCATTTCCTCGCTCCCTCCCTCCTGGCTTCGCATGGCGGTGG
CAGGGCAGGGAGGGATGGAGGACGTGCTGAGTGCGGTTGCCGCAGGAGTG
GATGTCGTCGCCTGCCCTTTACCGTTACTTTTAACGAGGGAGGGACATGC
GTTGGTGGGGAGGGTGAAGAATGAGGGTCGGAAGGATGGAAGGGAGGGGA
AAAGACGGCCGAGGAAGAGGACCCGGAGGGAGGAAGGTGTGAAGGGGGAA
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGATAAT
AAATTTATGGGATCGGAAATGGAGGAAGGACGCGAGGGCCTTAAGGGAAG
GGTGTGGGTGCCTCGCCTGCCGCACACCCCATTCTAGGGCGTATATCCAC
CATTTATTACTGTGTCGTGAGATACTCGGGGAGGTGGTGCTCTTTGTGCA
TAATCTCGAGTGGGTGGTGGAAATGGCCGAGGAAGCGAGGAAGGAGCTGC
TAGTGGGGTCCCTGGATAGATATAGACAGTTCATACAAAGTATTTTTGCA
TGA
back to top

Coding sequence (CDS) from alignment at chr28:164864..165766-

>NO28G00440.1 ID=NO28G00440.1|Name=NO28G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr28:164864..165766- (Nannochloropsis oceanica)
ATGGCAGTATCCATCATGGACGAGGCTCCCGAAGACGCTAGTAGAACAAG
ACAACAAAAGGCTGTCGAACGCACAGCCAGGTGGGTTGAAGACCTCGCCC
TCCTTCCCTTCCTCCCTCAGTCAGAAGGAGGAGGGGAGGAAGGAAAATCC
AGCGCGGGAATACGTCGCAAGAGCCCTTTCTTGTTGGCTGGAATCGTGGG
AGGATCAGACCTGAAGATGCGCTCACACAGCGTCCGCCTCACCCTCGACA
AGATCGCCCTTCCTCCCTCCCTCCCTCCCTCCCCGATCCTCGGAGTTGTT
CTCGGTGGCCTGGGACTCGGCGAGACGGCGGCTGCTCGACTTTCTGTCTA
CAATACTGTCATTTCCTCGCTCCCTCCCTCCTGGCTTCGCATGGCGGTGG
CAGGGCAGGGAGGGATGGAGGACGTGCTGAGTGCGGTTGCCGCAGGAGTG
GATGTCGTCGCCTGCCCTTTACCGTTACTTTTAACGAGGGAGGGACATGC
GTTGGTGGGGAGGGTGAAGAATGAGGGTCGGAAGGATGGAAGGGAGGGGA
AAAGACGGCCGAGGAAGAGGACCCGGAGGGAGGAAGGTGTGAAGGGGGAA
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGATAAT
AAATTTATGGGATCGGAAATGGAGGAAGGACGCGAGGGCCTTAAGGGAAG
GGTGTGGGTGCCTCGCCTGCCGCACACCCCATTCTAGGGCGTATATCCAC
CATTTATTACTGTGTCGTGAGATACTCGGGGAGGTGGTGCTCTTTGTGCA
TAATCTCGAGTGGGTGGTGGAAATGGCCGAGGAAGCGAGGAAGGAGCTGC
TAGTGGGGTCCCTGGATAGATATAGACAGTTCATACAAAGTATTTTTGCA
TGA
back to top
Synonyms
Publications