NO28G00370, NO28G00370 (gene) Nannochloropsis oceanica

Overview
NameNO28G00370
Unique NameNO28G00370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3670
Alignment locationchr28:143671..147340 +

Link to JBrowse

Properties
Property NameValue
DescriptionKh domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:143671..147340 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
BLAST of NO28G00370 vs. NCBI_GenBank
Match: EWM20955.1 (kh domain containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 181.0 bits (458), Expect = 9.100e-42
Identity = 116/150 (77.33%), Postives = 130/150 (86.67%), Query Frame = 0
Query:   81 ASLPPKSHEITVLLPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRRQKAADAK-----XXXXXXXXXXXXXXXXXXXXRKTLRWLIPAELSGLLIGKKGIGREEIQQESGA 226
            +S PP++HE+TVLLP+DAVGL+IGKGGQTLKRL+EE  N+ C+IRVQ YQE+  G  +RGIILRG FE IENVER +++LLR RRQKA DAK     XXXXXXXXXXXXXXXXXXX RKTLRWLIPAELSGLLIGKKGIGREEIQQESGA
Sbjct:  104 SSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEE-GNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKRERXXXXXXXXXXXXXXXXXXXXXKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGA 252          
BLAST of NO28G00370 vs. NCBI_GenBank
Match: CBN74642.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 167.2 bits (422), Expect = 1.400e-37
Identity = 109/368 (29.62%), Postives = 193/368 (52.45%), Query Frame = 0
Query:   90 ITVLLPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRR-------------QKAADAKXXXXXXXXXXXXXXXXXXXXRKT-LRWLIPAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDKLLYIEGASA---AAIEQARQLVEAKVGGRAMDKAEDDFVFVNI--RAIGFLLGKGGVDLKKMCEASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKTHPPKDFSLDPDGRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKFLSGEASHDALVDWRPILVTGSIRNVFKAQRILYEKLAS 439
            ++++ P DA+G++IGKGG  L+ + E+       + +Q  + I  G  +RG+ L G  + + NVE+ I E L  RR             + A +A                     + T +RW++     G LIGK G G + I+  SGA +++A E+ L   S ++++Y++G  +   AA+E  R     K+ GR    +E +   V++  +A+GF+LG  G  ++ + E +GA+L+VA  +E+ TG  E +V I G   Q+ A +  L D++AEWR ++ P     +P+  E ++K+AVP   +  +IGKGG  V+E+ + +   +K      S     D   ++++G+  NV +AQR++ E++A+
Sbjct:   99 LSIMCPSDAMGMLIGKGGSGLREMQEKTG---VKVSLQETKSIPEGAKERGVGLSGSLDCVANVEKLIFEKLNARRVTSLAPSPAEEEFEMAYEAAKAAGIEPNGATDVSDMNDPNKITVVRWIMDNAHCGWLIGKGGSGIQNIEATSGAQVRVATERSLGKDSAERIVYVKGNKSQREAALELIR--TNPKITGRVASPSEPEVAAVHVPSKAVGFILGHRGASIQALTEKTGAQLRVASGSEVTTGGGEHRVDITGGPKQIVAARHALQDRVAEWRTSNNPNG---EPEEPEYTLKVAVPQPLVGHIIGKGGTFVREVLSVTNVQVKIQQDTGSPTMWGDACCVMLSGTFGNVVRAQRMILERIAN 458          
BLAST of NO28G00370 vs. NCBI_GenBank
Match: XP_005854467.1 (kh domain protein [Nannochloropsis gaditana CCMP526] >EKU21891.1 kh domain protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 163.7 bits (413), Expect = 1.500e-36
Identity = 108/367 (29.43%), Postives = 180/367 (49.05%), Query Frame = 0
Query:   87 SHEITVLLPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRRQKAADAKXXXXXXXXXXXXXXXXXXXXRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDK-LLYIEGASAAAIEQARQLVEAKVGGRAMDKAEDDF------VFVNIRAIGFLLGKGGVDLKKMCEASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKTHPPK--------------DFSLDPDGRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKFLSGEASHDALVDWRPILVTGSIRNVFKAQRIL 433
            S+ +T+L+P +A+GL+IG+ G T + ++    N    ++VQ Y+++  GC  RGI L G +E +   +  I++ L  RR                           R T++W IP EL G LIGK+G     I  ESGA ++L HE+ELPP    K  +Y+ G  A   ++A  L+  KVGG         F      V V +RA+G L+G  G  ++++ E +GAR+ +A   + E GS E  + + G   ++ A + ++ +++  WR     +                    +  E +IK ++P   +  +IGKGG+ ++E++A SG  +K L  E S     D RP+++TG +  V   ++ L
Sbjct:  233 SYTLTILVPNEAMGLLIGRAGATRQEIVSRADN--VRLKVQDYKDMGEGCYDRGITLSGSWEKVAKAQVLILQKLIDRRNS--------IIREGNLEDTLFAGPDPRVTVKWCIPLELGGALIGKRGATLAHISSESGARIRLGHEEELPPSRHQKRAVYVTGRKAER-DKALALIREKVGGHYFGLLGQGFSPDAVVVKVPVRAVGMLMGPKGARMRELRETTGARVMLAKIGDTEMGSNETSIVLDGSQQEINAAREIVRERVFAWRMQESKERAERALTEAAAEELGMQASAEEEEVTIKFSLPVPLMGHVIGKGGSFIRELHA-SGVLVKILQEETSFTRTYDERPVMLTGPLATVLAVEQQL 587          
BLAST of NO28G00370 vs. NCBI_GenBank
Match: EWM22832.1 (rna-binding protein nova-2 [Nannochloropsis gaditana])

HSP 1 Score: 119.8 bits (299), Expect = 2.500e-23
Identity = 76/231 (32.90%), Postives = 118/231 (51.08%), Query Frame = 0
Query:   87 SHEITVLLPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRRQKAADAKXXXXXXXXXXXXXXXXXXXXRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDK-LLYIEGASAAAIEQARQLVEAKVGGRAMDKAEDDF------VFVNIRAIGFLLGKGGVDLKKMCEASGARLQVA 311
            S+ +T+L+P +A+GL+IG+ G T + ++    N    ++VQ Y+++  GC  RGI L G +E +   +  I++ L  RR                           R T++W IP EL G LIGK+G     I  ESGA ++L HE+ELPP    K  +Y+ G  A   ++A  L+  KVGG         F      V V +RA+G L+G  G  ++++ E +GAR+ +A
Sbjct:  108 SYTLTILVPNEAMGLLIGRAGATRQEIVSRADN--VRLKVQDYKDMGEGCYDRGITLSGSWEKVAKAQVLILQKLIDRRNS--------IIREGNLEDTLFAGPDPRVTVKWCIPLELGGALIGKRGATLAHISSESGARIRLGHEEELPPSRHQKRAVYVTGRKAER-DKALALIREKVGGHYFGLLGQGFSPDAVVVKVPVRAVGMLMGPKGARMRELRETTGARVMLA 327          
BLAST of NO28G00370 vs. NCBI_GenBank
Match: GAX99079.1 (Hypothetical protein PINS_006926 [Pythium insidiosum])

HSP 1 Score: 99.0 bits (245), Expect = 4.500e-17
Identity = 114/398 (28.64%), Postives = 198/398 (49.75%), Query Frame = 0
Query:   88 HEITVLLPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRRQKAADA--------------------KXXXXXXXXXXXXXXXXXXXXRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDKLLYIEGASAAAIEQARQLVEAKVGGR----AMDKAEDDFVFVNIRAIGFLLGKGGVDLKKMCEASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKTHPPKDFSLDPD-GRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKFLSGEASHDALVDWRPILVTGSIRNVFKAQRILYEKLAS------------LPPSQRQPPG 449
            H + +L+P D VG IIG GG  ++RL  E +   C++ V+      TG + R + L G    I   +R ++  +R  +    +A                     XXXXXXXXXXXXXXXXXXXX     WL+PA   G ++G  G+    I +++   ++++  +++P G+T++++ I GA   A E AR ++E + GGR    + +     +  +   A G L+G  G   +++ E +GAR+Q+ G   L  GS+   + + G+AAQ      ++S ++ E+ +       S+D    +E  +KL +P      L+ + G  ++EI  K+ +  + +    + DA  + R  ++ G  R VF+A+R+L + +A+            LPP +R+  G
Sbjct:  195 HVLHMLIPGDDVGCIIGLGGDAIRRLSAETN---CTLSVRAASAFATG-SDRVVRLYGTPRAICVAQRRLIRCIREHQASKQNALYLPLPRDAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLLPAADVGKIMGPDGVILRAIMRDTATTIRVSAIRDMPRGATERVVSIHGARDDA-EAARAMIERRAGGRPHLASHNSKTGAYFVIPYHAAGLLIGAKGTAARQLTELTGARVQIPGQECLPLGSVNRILHVHGDAAQTEGAIDIVSHRLREFVE-------SVDASRPQEIFLKLLLPRHICECLLDQRGRLIREITEKTASRARLM---PALDA--ELRVCVLYGEERAVFRAERLLLQFVAADAIANKRCSSAGLPPRKRKLDG 575          
BLAST of NO28G00370 vs. NCBI_GenBank
Match: KRX28055.1 (Far upstream element-binding protein 2 [Trichinella nelsoni] >KRX28057.1 Far upstream element-binding protein 2 [Trichinella nelsoni])

HSP 1 Score: 88.2 bits (217), Expect = 8.000e-14
Identity = 89/373 (23.86%), Postives = 152/373 (40.75%), Query Frame = 0
Query:   94 LPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRRQKAADAKXXXXXXXXXXXXXXXXXXXXRK------TLRWLIPAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDKLLYIEGASAAAIEQARQLVEA---------KVGGRAMDKAEDDFVFVNIRAIGFLLGKGGVDLKKMCEASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKTHPPKDFSLDPDGRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKFLSGEASHDALVDWRPI-LVTGSIRNVFKAQRILYEKLASLPPSQRQPPGPS 451
            +P   VGLIIG+GG+++ ++  E        +  P+     G   RG  L GP   +E  ++ I  ++    +  + ++                            T    IP    GL+IGK G   + +Q+ +G  + +  E   P G    L  I       +E A+QL+E          + G       +   V V   A+G ++G+GG  ++++   SGAR+Q       +  + E    I G   Q+     M++D +         K    D D       + VPA     +IGKGG  +K+IN  SGA ++ LS E + +   DW  + ++ G+   +  A  ++  K+  +PP    PP P+
Sbjct:   98 VPDSCVGLIIGRGGESINQIQSESGCRVQMSQTPPFD--VNGKPMRGCTLTGPSSSVEKAKQMISSIVTKAGETMSLSRGQPVYGSNGPSVLYSSSGSGSAGSDKTITTEMFIPGTKCGLVIGKGGETIKSLQERAGVKMVMIQESNQPSGLPKPLRII--GEPNKVEYAKQLIEEIMNSKHDMNEYGSLTDASKKIGEVIVPKHAVGSIIGRGGETIRRLTSESGARIQFKIGE--DHNAPERTAVISGTMEQIDRATRMITDLV--------NKSAGCDSD----IFYMHVPANKTGLVIGKGGETIKQINMDSGARVE-LSRETAPN---DWEKVFVIRGTPYQINHATHLIRIKVGDIPPGTPVPPFPT 448          
BLAST of NO28G00370 vs. NCBI_GenBank
Match: KRX28056.1 (Far upstream element-binding protein 2 [Trichinella nelsoni])

HSP 1 Score: 88.2 bits (217), Expect = 8.000e-14
Identity = 89/373 (23.86%), Postives = 152/373 (40.75%), Query Frame = 0
Query:   94 LPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRRQKAADAKXXXXXXXXXXXXXXXXXXXXRK------TLRWLIPAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDKLLYIEGASAAAIEQARQLVEA---------KVGGRAMDKAEDDFVFVNIRAIGFLLGKGGVDLKKMCEASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKTHPPKDFSLDPDGRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKFLSGEASHDALVDWRPI-LVTGSIRNVFKAQRILYEKLASLPPSQRQPPGPS 451
            +P   VGLIIG+GG+++ ++  E        +  P+     G   RG  L GP   +E  ++ I  ++    +  + ++                            T    IP    GL+IGK G   + +Q+ +G  + +  E   P G    L  I       +E A+QL+E          + G       +   V V   A+G ++G+GG  ++++   SGAR+Q       +  + E    I G   Q+     M++D +         K    D D       + VPA     +IGKGG  +K+IN  SGA ++ LS E + +   DW  + ++ G+   +  A  ++  K+  +PP    PP P+
Sbjct:   98 VPDSCVGLIIGRGGESINQIQSESGCRVQMSQTPPFD--VNGKPMRGCTLTGPSSSVEKAKQMISSIVTKAGETMSLSRGQPVYGSNGPSVLYSSSGSGSAGSDKTITTEMFIPGTKCGLVIGKGGETIKSLQERAGVKMVMIQESNQPSGLPKPLRII--GEPNKVEYAKQLIEEIMNSKHDMNEYGSLTDASKKIGEVIVPKHAVGSIIGRGGETIRRLTSESGARIQFKIGE--DHNAPERTAVISGTMEQIDRATRMITDLV--------NKSAGCDSD----IFYMHVPANKTGLVIGKGGETIKQINMDSGARVE-LSRETAPN---DWEKVFVIRGTPYQINHATHLIRIKVGDIPPGTPVPPFPT 448          
BLAST of NO28G00370 vs. NCBI_GenBank
Match: KRX78260.1 (Far upstream element-binding protein 2 [Trichinella sp. T6])

HSP 1 Score: 88.2 bits (217), Expect = 8.000e-14
Identity = 89/373 (23.86%), Postives = 152/373 (40.75%), Query Frame = 0
Query:   94 LPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRRQKAADAKXXXXXXXXXXXXXXXXXXXXRK------TLRWLIPAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDKLLYIEGASAAAIEQARQLVEA---------KVGGRAMDKAEDDFVFVNIRAIGFLLGKGGVDLKKMCEASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKTHPPKDFSLDPDGRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKFLSGEASHDALVDWRPI-LVTGSIRNVFKAQRILYEKLASLPPSQRQPPGPS 451
            +P   VGLIIG+GG+++ ++  E        +  P+     G   RG  L GP   +E  ++ I  ++    +  + ++                            T    IP    GL+IGK G   + +Q+ +G  + +  E   P G    L  I       +E A+QL+E          + G       +   V V   A+G ++G+GG  ++++   SGAR+Q       +  + E    I G   Q+     M++D +         K    D D       + VPA     +IGKGG  +K+IN  SGA ++ LS E + +   DW  + ++ G+   +  A  ++  K+  +PP    PP P+
Sbjct:   96 VPDSCVGLIIGRGGESINQIQSESGCRVQMSQTPPFD--VNGKPMRGCTLTGPSSSVEKAKQMISSIVTKAGETMSLSRGQPVYGSNGPSVLYSSSGSGAAGSDKTITTEMFIPGTKCGLVIGKGGETIKSLQERAGVKMVMIQESNQPSGLPKPLRII--GEPNKVEYAKQLIEEIMNSKHDMNEYGSLTDASKKIGEVIVPKHAVGSIIGRGGETIRRLTSESGARIQFKIGE--DHNAPERTAVISGTMEQIDRATRMITDLV--------NKSAGCDSD----IFYMHVPANKTGLVIGKGGETIKQINMDSGARVE-LSRETAPN---DWEKVFVIRGTPYQINHATHLIRIKVGDIPPGTPVPPFPT 446          
BLAST of NO28G00370 vs. NCBI_GenBank
Match: KRX78261.1 (Far upstream element-binding protein 2 [Trichinella sp. T6] >KRX78263.1 Far upstream element-binding protein 2 [Trichinella sp. T6])

HSP 1 Score: 88.2 bits (217), Expect = 8.000e-14
Identity = 89/373 (23.86%), Postives = 152/373 (40.75%), Query Frame = 0
Query:   94 LPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRRQKAADAKXXXXXXXXXXXXXXXXXXXXRK------TLRWLIPAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDKLLYIEGASAAAIEQARQLVEA---------KVGGRAMDKAEDDFVFVNIRAIGFLLGKGGVDLKKMCEASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKTHPPKDFSLDPDGRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKFLSGEASHDALVDWRPI-LVTGSIRNVFKAQRILYEKLASLPPSQRQPPGPS 451
            +P   VGLIIG+GG+++ ++  E        +  P+     G   RG  L GP   +E  ++ I  ++    +  + ++                            T    IP    GL+IGK G   + +Q+ +G  + +  E   P G    L  I       +E A+QL+E          + G       +   V V   A+G ++G+GG  ++++   SGAR+Q       +  + E    I G   Q+     M++D +         K    D D       + VPA     +IGKGG  +K+IN  SGA ++ LS E + +   DW  + ++ G+   +  A  ++  K+  +PP    PP P+
Sbjct:   96 VPDSCVGLIIGRGGESINQIQSESGCRVQMSQTPPFD--VNGKPMRGCTLTGPSSSVEKAKQMISSIVTKAGETMSLSRGQPVYGSNGPSVLYSSSGSGAAGSDKTITTEMFIPGTKCGLVIGKGGETIKSLQERAGVKMVMIQESNQPSGLPKPLRII--GEPNKVEYAKQLIEEIMNSKHDMNEYGSLTDASKKIGEVIVPKHAVGSIIGRGGETIRRLTSESGARIQFKIGE--DHNAPERTAVISGTMEQIDRATRMITDLV--------NKSAGCDSD----IFYMHVPANKTGLVIGKGGETIKQINMDSGARVE-LSRETAPN---DWEKVFVIRGTPYQINHATHLIRIKVGDIPPGTPVPPFPT 446          
BLAST of NO28G00370 vs. NCBI_GenBank
Match: KRX94026.1 (Far upstream element-binding protein 2, partial [Trichinella pseudospiralis])

HSP 1 Score: 88.2 bits (217), Expect = 8.000e-14
Identity = 89/372 (23.92%), Postives = 149/372 (40.05%), Query Frame = 0
Query:   94 LPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELL-----RFRRQKAADAKXXXXXXXXXXXXXXXXXXXXRKTLRWLIPAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDKLLYIEGASAAAIEQARQLVEA---------KVGGRAMDKAEDDFVFVNIRAIGFLLGKGGVDLKKMCEASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKTHPPKDFSLDPDGRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKFLSGEASHDALVDWRPI-LVTGSIRNVFKAQRILYEKLASLPPSQRQPPGPS 451
            +P   VGLIIG+GG+++ ++  E        +  P+     G   RG  L GP   +E  ++ I  ++          +                           T    IP    GL+IGK G   + +Q+ +G  + +  E   P G    L  I       +E A+QL+E          + G       +   V V   A+G ++G+GG  ++++   SGAR+Q       +  + E    I G   Q+     M++D +         K    D D       + VPA     +IGKGG  +K+IN  SGA ++ LS E + +   DW  + ++ G+   +  A  ++  K+  +PP    PP P+
Sbjct:   88 VPDSCVGLIIGRGGESINQIQSESGCRVQMSQTPPFD--VNGKPMRGCTLTGPSSSVEKAKQMISSIVTKAGETMSLSRGQPVYGSNGPSVLYSSGGSGGGSDKTITTEMFIPGTKCGLVIGKGGETIKSLQERAGVKMVMIQESNQPSGLPKPLRII--GEPNKVEYAKQLIEEIMNSKHDMNEYGSLTDASKKIGEVIVPKHAVGSIIGRGGETIRRLTSESGARIQFKIGE--DHNAPERTAVISGTMEQIDRATRMITDLV--------NKSAGCDSD----IFYMHVPANKTGLVIGKGGETIKQINMDSGARVE-LSRETAPN---DWEKVFVIRGTPYQINHATHLIRIKVGDIPPGTPVPPFPT 437          
The following BLAST results are available for this feature:
BLAST of NO28G00370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20955.19.100e-4277.33kh domain containing protein, partial [Nannochloro... [more]
CBN74642.11.400e-3729.62conserved unknown protein [Ectocarpus siliculosus][more]
XP_005854467.11.500e-3629.43kh domain protein [Nannochloropsis gaditana CCMP52... [more]
EWM22832.12.500e-2332.90rna-binding protein nova-2 [Nannochloropsis gadita... [more]
GAX99079.14.500e-1728.64Hypothetical protein PINS_006926 [Pythium insidios... [more]
KRX28055.18.000e-1423.86Far upstream element-binding protein 2 [Trichinell... [more]
KRX28056.18.000e-1423.86Far upstream element-binding protein 2 [Trichinell... [more]
KRX78260.18.000e-1423.86Far upstream element-binding protein 2 [Trichinell... [more]
KRX78261.18.000e-1423.86Far upstream element-binding protein 2 [Trichinell... [more]
KRX94026.18.000e-1423.92Far upstream element-binding protein 2, partial [T... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00370.1NO28G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100968g2gene9468Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00370.1NO28G00370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00370 ID=NO28G00370|Name=NO28G00370|organism=Nannochloropsis oceanica|type=gene|length=3670bp
ATGGATCCAGCTACTACAGCCAGCAGCAGCACCAGCGGCAGCAGCACCAG
CCGCAAACGCAGCGCTCCTGCGACCTCTACGGAGGCCAAGGGAAAAGGGA
GCAGAGGGAGCAATGCTTCCTCTTCCTCCACGGAGCCTGCCGCCAAGCGC
CCTGCCCCTACTACAAGCACCAGCCCGAACAATCCCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCACCCTGTTGCCTCTCTTC
CTCCGAAATCACACGAAATCACCGTGCTCCTTCCCATGGACGCCGTAGGT
CTGATCATTGGAAAAGGCGGACAGACCCTGAAAAGGCTGATGGAGGAAGT
GAGCAACAACACTTGCAGCATCCGTGTGCAACCTTACCAGgtagggagag
agagaagaggaaagagtgaggaaaagagggagggggcgagcgagcgaggg
aggaagggaaagagaggggaagggagggaggaaaagaggctgggagagag
gaaactgatttttttggtcactcgatgactcactttttcatgcctcctgc
cccccgtgccccggttcatccctctctttttctcagGAGATAACGACTGG
CTGCACCCAGCGAGGGATTATCTTACGGGGGCCCTTTGAAGGCATTGAAA
ATGTGGAGCGGGAAATTATGGAATTGCTTCGATTCCGACGACAGAAGGCA
GCGGATGCCAAGGCCGAGGAAGAGGCCTTGAGGGAGGGCGGGAAGGAGGG
CGTGAAGGAGGGCGAGAAACCGCGGAAGACGTTACGGTGGCTCATTCCGG
CGGAACTATCAGGGTTGTTGATTGGAAAGAAGGGGATAGGCAGAGAGGAG
ATTCAGCAGGAATCAGgtgagggagggagggagggagggagggagggagg
gagggagggagggagggagggaggacaggctgtaataatcctttttttaa
tttggtccgtttcgtcgagcttcttctacgctcatccctctctccctccc
tccctccctccaagtgactctcatcttgttcctcccgtcttctaccactg
tccccaccatctcactcctccctccctccctccctccctccctccctccc
tccccgtagGCGCCTACCTGAAGCTGGCGCACGAACAAGAGCTGCCCCCG
GGGTCCACAGACAAGCTCCTTTACATCGAGGGGGCATCAGCCGCCGCCAT
CGAGCAGGCCCGACAGCTGGTGGAAGCCAAGGTGGGAGGGCGAGgtgcgt
accttcttcgacgttgccctccctccctccttccttccctccctcctgtc
cgtgtcgttctgacatacccccacctctcgaatacttccattccctccct
ctttccctctttccctctttccctctttccctccctccctccctccctcc
ctccctccctccctcccccagCCATGGACAAGGCCGAGGATGATTTTGTC
TTCGTCAATATCAGGGCCATCGGGTTCCTCTTGGGGAAAGGCGGAGTCGA
CTTGAAGAAAATGTGCGAAGCTTCTGGTGCCCGGCTGCAGgtgaagatcc
aacagaccctccctccctccctccctccctccctccctccctccctccct
cccgccctccctccctccctcccgccctccctcccgccctccctcccgcc
ctccctccctcccgccctccctcccacccgcccgcccgcccgccctcgct
cgctccctggacggcatatccagacgcatacacatgtttttcctctccac
aacaaagaataaacgccacgcccgacaactaacaatcatgcaccttcaaa
tatatcatcaataatcaaacagGTGGCGGGCGCCGCAGAACTTGAAACAG
GCTCCATCGAGATCAAGgtaccctccctccctccctccctccctccctcc
ttccgtccctccccctcctttcctccatgtctaactttcccttttctccc
tttgacatctcgctgaccttttccctccctccctccctccctccctccct
ccctccctccctagGTCCGCATTATGGGAGAAGCAGCTCAAGTCGCGGCG
GGCAAGACCATGTTGTCAGgtagtgagggagggaaggagggagggaggga
gggggaggggggaagaaggaaagaaggaaaagaaggagaggcagacggga
aagaaggaggagaagggagggaaaggggggagggaaaggggggagggaaa
gaaggaagcagacgattaaggaaagaggaaaggaaggaaaggaggaagca
gacgaataagattccaacgctcccttcctcccatccctccccgcccccct
ccctccctccctccctccctcccttcgtagACAAAATGGCGGAGTGGCGC
AAGACCCACCCGCCTAAGGATTTTTCCTTAGACCCCGACGGTCGTGAATC
TTCGATTAAATTAGCCGTGCCTGCCGCCGCGATCTCGGCGCTGATCGgta
cggatgcacttcctctcttctttcctctcttccttctcttcttccctcct
ttcctctcttcttcccttcatccctctcttcttccctctcttcctccctc
cctccctctcttcttccctccctccctcccttctttccttccttcctcct
catccggggaccaggtcaaagtcaacgatctaaatatcccgtgccatgga
gccttacccctccctccctctctccctccctccctccctccctccctccc
tccctccctccctccctccctccctccctccctccctccctccctccctc
caccagGCAAAGGCGGCGCGGGTGTGAAGGAAATCAACGCCAAGAGCGGG
GCGTCCATCAAATTCCTCTCGGGTGAAGCCTCGCACGACGCGCTCGTCGA
CTGGCGGCCCATCCTCGTCACGGGTTCCATCCGAAACGTATTCAAGgtaa
gtagtgatgtacgccttccctccctccctccctccctccctccctcaatt
gtcttgtgactcctcgggactcgccttcgaaaaaagtactctactatctc
cctccctccctccctccctccctagGCACAACGCATCCTCTACGAGAAGC
TGGCCTCCCTCCCTCCCTCCCAACGCCAACCCCCCGGCCCAAGCTCCCTT
CCTCCCTCCCTTCCTCCCTCCCTCCCTCCACCACGGCCTACCCCGGCGTT
GGCCTGTTGGATGCAGCGAGGGGCAACGCTCCCCACCCACACGCATCGCT
GCTTCAGCCGTCATTTCAAAGCGGGCTGGGGGGAGGAGCTGGAGGTCTGT
ATGGCTAAGAACCCTTGAGCGTGTTTGTCGTCCTCCTCTTCCTCCTCCTC
TTCCTCCTCCTCTCCCTTCTTCTTCTTCTTCTTCTGCTCCTTCTCCTTCT
TCTTCTCCTCCTCCTTCTCCTCCTCCTCCTTTTCCTCCTTCTTCTTCTCC
TCTCCCTCTAAGGGTCGTGCGTGTGTGTGATTGTGCCTCCTCGCGTGTCG
TTGTCGGACGGGAGTAGCGGCGGTCTGTGGGAGGGAGGAAGGGAGGGAGG
GAGGGAGAGAGCAAGGGTGTGGGTCTAGAAGGATATGGTCGAAGGGGGTT
GGGCAACAAGATTAATTTAGAGGAGGAAGAGGGAGCCCCAGGGAAAGTCA
AAGGAAAACGAGGCCATGATTGCTGTGATTATTTATCATGACTATGTATG
CAAGTGCGCATTGGGAGTTT
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protein sequence of NO28G00370.1

>NO28G00370.1-protein ID=NO28G00370.1-protein|Name=NO28G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MDPATTASSSTSGSSTSRKRSAPATSTEAKGKGSRGSNASSSSTEPAAKR
PAPTTSTSPNNPTSSSSSSSSSSSSSTHPVASLPPKSHEITVLLPMDAVG
LIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGI
ENVEREIMELLRFRRQKAADAKAEEEALREGGKEGVKEGEKPRKTLRWLI
PAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDKLLYIEGAS
AAAIEQARQLVEAKVGGRAMDKAEDDFVFVNIRAIGFLLGKGGVDLKKMC
EASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKT
HPPKDFSLDPDGRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKF
LSGEASHDALVDWRPILVTGSIRNVFKAQRILYEKLASLPPSQRQPPGPS
SLPPSLPPSLPPPRPTPALACWMQRGATLPTHTHRCFSRHFKAGWGEELE
VCMAKNP*
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