NO28G00370.1, NO28G00370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00370.1
Unique NameNO28G00370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1926
Alignment locationchr28:143671..147340 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:143671..147340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00370.1 vs.
Match: EWM20955.1 (kh domain containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 186.4 bits (472), Expect = 2.200e-43
Identity = 124/224 (55.36%), Postives = 153/224 (68.30%), Query Frame = 0 
Query:    8 SSSTSGSSTSRKRSAPATSTEAKGKGSRGSNASSSSTEPA-AKRPAPTTSTSPNNPTSSSSSSSSSSSSSTHPVASLPPKSHEITVLLPMDAVGLIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGIENVEREIMELLRFRRQKAADAKAEEEALREGGKEGVKEG-----EKPRKTLRWLIPAELSGLLIGKKGIGREEIQQESGA 226
            S ST+G S  +    P  +    G+    +  ++S++    A    PTT  +     SS  S++   S+     +S PP++HE+TVLLP+DAVGL+IGKGGQTLKRL+EE  N+ C+IRVQ YQE+  G  +RGIILRG FE IENVER +++LLR RRQKA DAK E E  +EGGKEG K G     E+ RKTLRWLIPAELSGLLIGKKGIGREEIQQESGA
Sbjct:   30 SRSTTGPSLCQLTHIPTHTHTMDGQVELSAPVTASTSRKRNAPASTPTTDQANEGLLSSQPSAAKRQSTGAGVASSPPPRAHEVTVLLPIDAVGLMIGKGGQTLKRLLEE-GNSACAIRVQDYQEVRAGSKERGIILRGSFEAIENVERAMIDLLRHRRQKAVDAKREREEAKEGGKEGGKAGGREGEERKRKTLRWLIPAELSGLLIGKKGIGREEIQQESGA 252
The following BLAST results are available for this feature:
BLAST of NO28G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20955.12.200e-4355.36kh domain containing protein, partial [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00370NO28G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00370.1NO28G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00370.1.cds1NO28G00370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00370.1.cds2NO28G00370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00370.1.cds3NO28G00370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00370.1.cds4NO28G00370.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00370.1.cds5NO28G00370.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00370.1.cds6NO28G00370.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00370.1.cds7NO28G00370.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00370.1.cds8NO28G00370.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00370.1.cds9NO28G00370.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00370.1 ID=NO28G00370.1|Name=NO28G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp
ATGGATCCAGCTACTACAGCCAGCAGCAGCACCAGCGGCAGCAGCACCAG
CCGCAAACGCAGCGCTCCTGCGACCTCTACGGAGGCCAAGGGAAAAGGGA
GCAGAGGGAGCAATGCTTCCTCTTCCTCCACGGAGCCTGCCGCCAAGCGC
CCTGCCCCTACTACAAGCACCAGCCCGAACAATCCCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCACCCTGTTGCCTCTCTTC
CTCCGAAATCACACGAAATCACCGTGCTCCTTCCCATGGACGCCGTAGGT
CTGATCATTGGAAAAGGCGGACAGACCCTGAAAAGGCTGATGGAGGAAGT
GAGCAACAACACTTGCAGCATCCGTGTGCAACCTTACCAGGAGATAACGA
CTGGCTGCACCCAGCGAGGGATTATCTTACGGGGGCCCTTTGAAGGCATT
GAAAATGTGGAGCGGGAAATTATGGAATTGCTTCGATTCCGACGACAGAA
GGCAGCGGATGCCAAGGCCGAGGAAGAGGCCTTGAGGGAGGGCGGGAAGG
AGGGCGTGAAGGAGGGCGAGAAACCGCGGAAGACGTTACGGTGGCTCATT
CCGGCGGAACTATCAGGGTTGTTGATTGGAAAGAAGGGGATAGGCAGAGA
GGAGATTCAGCAGGAATCAGGCGCCTACCTGAAGCTGGCGCACGAACAAG
AGCTGCCCCCGGGGTCCACAGACAAGCTCCTTTACATCGAGGGGGCATCA
GCCGCCGCCATCGAGCAGGCCCGACAGCTGGTGGAAGCCAAGGTGGGAGG
GCGAGCCATGGACAAGGCCGAGGATGATTTTGTCTTCGTCAATATCAGGG
CCATCGGGTTCCTCTTGGGGAAAGGCGGAGTCGACTTGAAGAAAATGTGC
GAAGCTTCTGGTGCCCGGCTGCAGGTGGCGGGCGCCGCAGAACTTGAAAC
AGGCTCCATCGAGATCAAGGTCCGCATTATGGGAGAAGCAGCTCAAGTCG
CGGCGGGCAAGACCATGTTGTCAGACAAAATGGCGGAGTGGCGCAAGACC
CACCCGCCTAAGGATTTTTCCTTAGACCCCGACGGTCGTGAATCTTCGAT
TAAATTAGCCGTGCCTGCCGCCGCGATCTCGGCGCTGATCGGCAAAGGCG
GCGCGGGTGTGAAGGAAATCAACGCCAAGAGCGGGGCGTCCATCAAATTC
CTCTCGGGTGAAGCCTCGCACGACGCGCTCGTCGACTGGCGGCCCATCCT
CGTCACGGGTTCCATCCGAAACGTATTCAAGGCACAACGCATCCTCTACG
AGAAGCTGGCCTCCCTCCCTCCCTCCCAACGCCAACCCCCCGGCCCAAGC
TCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCACCACGGCCTACCCC
GGCGTTGGCCTGTTGGATGCAGCGAGGGGCAACGCTCCCCACCCACACGC
ATCGCTGCTTCAGCCGTCATTTCAAAGCGGGCTGGGGGGAGGAGCTGGAG
GTCTGTATGGCTAAGAACCCTTGAGCGTGTTTGTCGTCCTCCTCTTCCTC
CTCCTCTTCCTCCTCCTCTCCCTTCTTCTTCTTCTTCTTCTGCTCCTTCT
CCTTCTTCTTCTCCTCCTCCTTCTCCTCCTCCTCCTTTTCCTCCTTCTTC
TTCTCCTCTCCCTCTAAGGGTCGTGCGTGTGTGTGATTGTGCCTCCTCGC
GTGTCGTTGTCGGACGGGAGTAGCGGCGGTCTGTGGGAGGGAGGAAGGGA
GGGAGGGAGGGAGAGAGCAAGGGTGTGGGTCTAGAAGGATATGGTCGAAG
GGGGTTGGGCAACAAGATTAATTTAGAGGAGGAAGAGGGAGCCCCAGGGA
AAGTCAAAGGAAAACGAGGCCATGATTGCTGTGATTATTTATCATGACTA
TGTATGCAAGTGCGCATTGGGAGTTT
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protein sequence of NO28G00370.1

>NO28G00370.1-protein ID=NO28G00370.1-protein|Name=NO28G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MDPATTASSSTSGSSTSRKRSAPATSTEAKGKGSRGSNASSSSTEPAAKR
PAPTTSTSPNNPTSSSSSSSSSSSSSTHPVASLPPKSHEITVLLPMDAVG
LIIGKGGQTLKRLMEEVSNNTCSIRVQPYQEITTGCTQRGIILRGPFEGI
ENVEREIMELLRFRRQKAADAKAEEEALREGGKEGVKEGEKPRKTLRWLI
PAELSGLLIGKKGIGREEIQQESGAYLKLAHEQELPPGSTDKLLYIEGAS
AAAIEQARQLVEAKVGGRAMDKAEDDFVFVNIRAIGFLLGKGGVDLKKMC
EASGARLQVAGAAELETGSIEIKVRIMGEAAQVAAGKTMLSDKMAEWRKT
HPPKDFSLDPDGRESSIKLAVPAAAISALIGKGGAGVKEINAKSGASIKF
LSGEASHDALVDWRPILVTGSIRNVFKAQRILYEKLASLPPSQRQPPGPS
SLPPSLPPSLPPPRPTPALACWMQRGATLPTHTHRCFSRHFKAGWGEELE
VCMAKNP*
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mRNA from alignment at chr28:143671..147340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00370.1 ID=NO28G00370.1|Name=NO28G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3670bp|location=Sequence derived from alignment at chr28:143671..147340+ (Nannochloropsis oceanica)
ATGGATCCAGCTACTACAGCCAGCAGCAGCACCAGCGGCAGCAGCACCAG
CCGCAAACGCAGCGCTCCTGCGACCTCTACGGAGGCCAAGGGAAAAGGGA
GCAGAGGGAGCAATGCTTCCTCTTCCTCCACGGAGCCTGCCGCCAAGCGC
CCTGCCCCTACTACAAGCACCAGCCCGAACAATCCCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCACCCTGTTGCCTCTCTTC
CTCCGAAATCACACGAAATCACCGTGCTCCTTCCCATGGACGCCGTAGGT
CTGATCATTGGAAAAGGCGGACAGACCCTGAAAAGGCTGATGGAGGAAGT
GAGCAACAACACTTGCAGCATCCGTGTGCAACCTTACCAGGTAGGGAGAG
AGAGAAGAGGAAAGAGTGAGGAAAAGAGGGAGGGGGCGAGCGAGCGAGGG
AGGAAGGGAAAGAGAGGGGAAGGGAGGGAGGAAAAGAGGCTGGGAGAGAG
GAAACTGATTTTTTTGGTCACTCGATGACTCACTTTTTCATGCCTCCTGC
CCCCCGTGCCCCGGTTCATCCCTCTCTTTTTCTCAGGAGATAACGACTGG
CTGCACCCAGCGAGGGATTATCTTACGGGGGCCCTTTGAAGGCATTGAAA
ATGTGGAGCGGGAAATTATGGAATTGCTTCGATTCCGACGACAGAAGGCA
GCGGATGCCAAGGCCGAGGAAGAGGCCTTGAGGGAGGGCGGGAAGGAGGG
CGTGAAGGAGGGCGAGAAACCGCGGAAGACGTTACGGTGGCTCATTCCGG
CGGAACTATCAGGGTTGTTGATTGGAAAGAAGGGGATAGGCAGAGAGGAG
ATTCAGCAGGAATCAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGACAGGCTGTAATAATCCTTTTTTTAA
TTTGGTCCGTTTCGTCGAGCTTCTTCTACGCTCATCCCTCTCTCCCTCCC
TCCCTCCCTCCAAGTGACTCTCATCTTGTTCCTCCCGTCTTCTACCACTG
TCCCCACCATCTCACTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCCGTAGGCGCCTACCTGAAGCTGGCGCACGAACAAGAGCTGCCCCCG
GGGTCCACAGACAAGCTCCTTTACATCGAGGGGGCATCAGCCGCCGCCAT
CGAGCAGGCCCGACAGCTGGTGGAAGCCAAGGTGGGAGGGCGAGGTGCGT
ACCTTCTTCGACGTTGCCCTCCCTCCCTCCTTCCTTCCCTCCCTCCTGTC
CGTGTCGTTCTGACATACCCCCACCTCTCGAATACTTCCATTCCCTCCCT
CTTTCCCTCTTTCCCTCTTTCCCTCTTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCCCAGCCATGGACAAGGCCGAGGATGATTTTGTC
TTCGTCAATATCAGGGCCATCGGGTTCCTCTTGGGGAAAGGCGGAGTCGA
CTTGAAGAAAATGTGCGAAGCTTCTGGTGCCCGGCTGCAGGTGAAGATCC
AACAGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCGCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCCGCCCTCCCTCCCGCC
CTCCCTCCCTCCCGCCCTCCCTCCCACCCGCCCGCCCGCCCGCCCTCGCT
CGCTCCCTGGACGGCATATCCAGACGCATACACATGTTTTTCCTCTCCAC
AACAAAGAATAAACGCCACGCCCGACAACTAACAATCATGCACCTTCAAA
TATATCATCAATAATCAAACAGGTGGCGGGCGCCGCAGAACTTGAAACAG
GCTCCATCGAGATCAAGGTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TTCCGTCCCTCCCCCTCCTTTCCTCCATGTCTAACTTTCCCTTTTCTCCC
TTTGACATCTCGCTGACCTTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTAGGTCCGCATTATGGGAGAAGCAGCTCAAGTCGCGGCG
GGCAAGACCATGTTGTCAGGTAGTGAGGGAGGGAAGGAGGGAGGGAGGGA
GGGGGAGGGGGGAAGAAGGAAAGAAGGAAAAGAAGGAGAGGCAGACGGGA
AAGAAGGAGGAGAAGGGAGGGAAAGGGGGGAGGGAAAGGGGGGAGGGAAA
GAAGGAAGCAGACGATTAAGGAAAGAGGAAAGGAAGGAAAGGAGGAAGCA
GACGAATAAGATTCCAACGCTCCCTTCCTCCCATCCCTCCCCGCCCCCCT
CCCTCCCTCCCTCCCTCCCTCCCTTCGTAGACAAAATGGCGGAGTGGCGC
AAGACCCACCCGCCTAAGGATTTTTCCTTAGACCCCGACGGTCGTGAATC
TTCGATTAAATTAGCCGTGCCTGCCGCCGCGATCTCGGCGCTGATCGGTA
CGGATGCACTTCCTCTCTTCTTTCCTCTCTTCCTTCTCTTCTTCCCTCCT
TTCCTCTCTTCTTCCCTTCATCCCTCTCTTCTTCCCTCTCTTCCTCCCTC
CCTCCCTCTCTTCTTCCCTCCCTCCCTCCCTTCTTTCCTTCCTTCCTCCT
CATCCGGGGACCAGGTCAAAGTCAACGATCTAAATATCCCGTGCCATGGA
GCCTTACCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CACCAGGCAAAGGCGGCGCGGGTGTGAAGGAAATCAACGCCAAGAGCGGG
GCGTCCATCAAATTCCTCTCGGGTGAAGCCTCGCACGACGCGCTCGTCGA
CTGGCGGCCCATCCTCGTCACGGGTTCCATCCGAAACGTATTCAAGGTAA
GTAGTGATGTACGCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAATT
GTCTTGTGACTCCTCGGGACTCGCCTTCGAAAAAAGTACTCTACTATCTC
CCTCCCTCCCTCCCTCCCTCCCTAGGCACAACGCATCCTCTACGAGAAGC
TGGCCTCCCTCCCTCCCTCCCAACGCCAACCCCCCGGCCCAAGCTCCCTT
CCTCCCTCCCTTCCTCCCTCCCTCCCTCCACCACGGCCTACCCCGGCGTT
GGCCTGTTGGATGCAGCGAGGGGCAACGCTCCCCACCCACACGCATCGCT
GCTTCAGCCGTCATTTCAAAGCGGGCTGGGGGGAGGAGCTGGAGGTCTGT
ATGGCTAAGAACCCTTGAGCGTGTTTGTCGTCCTCCTCTTCCTCCTCCTC
TTCCTCCTCCTCTCCCTTCTTCTTCTTCTTCTTCTGCTCCTTCTCCTTCT
TCTTCTCCTCCTCCTTCTCCTCCTCCTCCTTTTCCTCCTTCTTCTTCTCC
TCTCCCTCTAAGGGTCGTGCGTGTGTGTGATTGTGCCTCCTCGCGTGTCG
TTGTCGGACGGGAGTAGCGGCGGTCTGTGGGAGGGAGGAAGGGAGGGAGG
GAGGGAGAGAGCAAGGGTGTGGGTCTAGAAGGATATGGTCGAAGGGGGTT
GGGCAACAAGATTAATTTAGAGGAGGAAGAGGGAGCCCCAGGGAAAGTCA
AAGGAAAACGAGGCCATGATTGCTGTGATTATTTATCATGACTATGTATG
CAAGTGCGCATTGGGAGTTT
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Coding sequence (CDS) from alignment at chr28:143671..147340+

>NO28G00370.1 ID=NO28G00370.1|Name=NO28G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr28:143671..147340+ (Nannochloropsis oceanica)
ATGGATCCAGCTACTACAGCCAGCAGCAGCACCAGCGGCAGCAGCACCAG
CCGCAAACGCAGCGCTCCTGCGACCTCTACGGAGGCCAAGGGAAAAGGGA
GCAGAGGGAGCAATGCTTCCTCTTCCTCCACGGAGCCTGCCGCCAAGCGC
CCTGCCCCTACTACAAGCACCAGCCCGAACAATCCCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCACCCTGTTGCCTCTCTTC
CTCCGAAATCACACGAAATCACCGTGCTCCTTCCCATGGACGCCGTAGGT
CTGATCATTGGAAAAGGCGGACAGACCCTGAAAAGGCTGATGGAGGAAGT
GAGCAACAACACTTGCAGCATCCGTGTGCAACCTTACCAGGAGATAACGA
CTGGCTGCACCCAGCGAGGGATTATCTTACGGGGGCCCTTTGAAGGCATT
GAAAATGTGGAGCGGGAAATTATGGAATTGCTTCGATTCCGACGACAGAA
GGCAGCGGATGCCAAGGCCGAGGAAGAGGCCTTGAGGGAGGGCGGGAAGG
AGGGCGTGAAGGAGGGCGAGAAACCGCGGAAGACGTTACGGTGGCTCATT
CCGGCGGAACTATCAGGGTTGTTGATTGGAAAGAAGGGGATAGGCAGAGA
GGAGATTCAGCAGGAATCAGGCGCCTACCTGAAGCTGGCGCACGAACAAG
AGCTGCCCCCGGGGTCCACAGACAAGCTCCTTTACATCGAGGGGGCATCA
GCCGCCGCCATCGAGCAGGCCCGACAGCTGGTGGAAGCCAAGGTGGGAGG
GCGAGCCATGGACAAGGCCGAGGATGATTTTGTCTTCGTCAATATCAGGG
CCATCGGGTTCCTCTTGGGGAAAGGCGGAGTCGACTTGAAGAAAATGTGC
GAAGCTTCTGGTGCCCGGCTGCAGGTGGCGGGCGCCGCAGAACTTGAAAC
AGGCTCCATCGAGATCAAGGTCCGCATTATGGGAGAAGCAGCTCAAGTCG
CGGCGGGCAAGACCATGTTGTCAGACAAAATGGCGGAGTGGCGCAAGACC
CACCCGCCTAAGGATTTTTCCTTAGACCCCGACGGTCGTGAATCTTCGAT
TAAATTAGCCGTGCCTGCCGCCGCGATCTCGGCGCTGATCGGCAAAGGCG
GCGCGGGTGTGAAGGAAATCAACGCCAAGAGCGGGGCGTCCATCAAATTC
CTCTCGGGTGAAGCCTCGCACGACGCGCTCGTCGACTGGCGGCCCATCCT
CGTCACGGGTTCCATCCGAAACGTATTCAAGGCACAACGCATCCTCTACG
AGAAGCTGGCCTCCCTCCCTCCCTCCCAACGCCAACCCCCCGGCCCAAGC
TCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCACCACGGCCTACCCC
GGCGTTGGCCTGTTGGATGCAGCGAGGGGCAACGCTCCCCACCCACACGC
ATCGCTGCTTCAGCCGTCATTTCAAAGCGGGCTGGGGGGAGGAGCTGGAG
GTCTGTATGGCTAAGAACCCTTGA
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Synonyms
Publications