NO28G00260, NO28G00260 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G00260 vs. NCBI_GenBank
Match: CBJ29793.1 (tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus]) HSP 1 Score: 196.4 bits (498), Expect = 1.900e-46 Identity = 122/298 (40.94%), Postives = 164/298 (55.03%), Query Frame = 0 Query: 140 WRKETAIL-VTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQR 437 WR L +TS+ N K+K+ R++ K++ RD +L EGHRLV D +E G TP V+VSPEA R GP L A L +L + V +A +V DTV+ QGV+A++ RP LP VL+ DG+QDPGN+GTL+RTA G G +VL D W PK +RASMGA+F+ P + SW E +R+RG + + +D DWT P+ L+VG E GLS+ R L+ GG G+ +PL G+ESLNAA AGAI++ E RQR Sbjct: 57 WRDRGGTLDITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADVVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLP-----PTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSL-RLESWQEVVELMRARGIR----------------MYAADGGARLSHFD-ADWTSPSALVVGAEARGLSDAARLELESGGIAGV----SVPLEGGVESLNAAVAGAIVLGEAQRQR 327
BLAST of NO28G00260 vs. NCBI_GenBank
Match: OSX81455.1 (hypothetical protein BU14_0014s0009 [Porphyra umbilicalis]) HSP 1 Score: 162.5 bits (410), Expect = 3.000e-36 Identity = 113/310 (36.45%), Postives = 161/310 (51.94%), Query Frame = 0 Query: 143 ETAILVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGH--TPIHVLVSPEAFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFIT-----EATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAA----CIPLVRGIESLNAAAAGAIIMSEVARQRRMKAG 442 + A+ V S+ N +IK R +++ R+R+ ++LLEGHRLV DA+ A P+H +V+ P+ L+ + A+ +ATP +VAS DTV+PQGV+AV+ RPS+++ +L LDG+ DPGNVGTL+R+A G +VL D W PKALRA MGA + P + E +WA + G+R R G + YD VDW PTVL+VG E EG S L+ AA IP++ +ESLNAA AG++++ E RQR +G Sbjct: 87 QDAVEVVSTRNPRIKAVRHLLRRRMREREGLLLLEGHRLVVDALGAARPAAPVHTVVATRQAAARLWPA-LSTATGVARDALLVATPDVVASVCDTVTPQGVVAVVGRPSTTV-----VPGSTLLLALDGVADPGNVGTLLRSAAAAGADGVVLTKGCADVWSPKALRAGMGAQLRLPVLAGLEPEEVVAWARGR-GLRLRVADGS----------------------AVMAYDGVDWAAPTVLVVGGEA------------EGPSAALLAAADDVVAIPMLGEVESLNAAIAGSVVLYEARRQRSEASG 355
BLAST of NO28G00260 vs. NCBI_GenBank
Match: XP_005711212.1 (unnamed protein product [Chondrus crispus] >CDF40918.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 154.1 bits (388), Expect = 1.100e-33 Identity = 104/291 (35.74%), Postives = 150/291 (51.55%), Query Frame = 0 Query: 148 VTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSS--AVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQR 437 +TS+ N +K+ R+ +++ RD++ ++LLEG RL++DA+ A P + S + R R ++ ALL + S A L ++ S +TVSPQGV+AV+ RP+ LP LV D ++DPGNVGTL+R+A G GV +++ H DPWG K LRA MGA F+ P + SW E + G E+Y +VDW P ++VG E G E + E R IPL G+ESLNAA AG++++ EV RQR Sbjct: 35 LTSARNPHLKLARSLLRRRHRDKNNLILLEGQRLIEDALSASFAPHQLFYSDKLLR--RSAAMGALLADVRRSGCAPMLVAEPIMRSLCNTVSPQGVVAVLERPALPLP-----DSGTLALVCDEVRDPGNVGTLLRSAAGAGVDAVLMTHGCADPWGLKVLRAGMGAHFRLP-VQVDQSWDEVMQVVHKWG------------------CEVSVADGGGEDYAKVDWCGPAAIVVGGEANGPGERAFQ-------EAQGRVVGIPLCSGMESLNAAVAGSVVLFEVRRQR 292
BLAST of NO28G00260 vs. NCBI_GenBank
Match: OUC09640.1 (hypothetical protein RY27_01620 [Litorilinea aerophila]) HSP 1 Score: 154.1 bits (388), Expect = 1.100e-33 Identity = 108/293 (36.86%), Postives = 146/293 (49.83%), Query Frame = 0 Query: 147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSSAV--TLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRR 438 ++TS+ N +IK R +++ R +LLEG RLV+DA +AG P VL PEA + LL L V +P + AS SDTV+PQG+LAV+P P LP VL+LD ++DPGN GTL+RTA GV ++L + DP+ K +RA MGA F+ P + SW + + YD+VDW RP L++G E AG S+ R+R A IP+ +ESLNAA AGA+I+ E ARQRR Sbjct: 1 MITSTSNPRIKEIRKLHRRRHRHESGRILLEGVRLVEDATQAGVRPEMVLYVPEAVAGQERAA--RLLQQLQEQGVECLACSPEVFASVSDTVTPQGILAVVPLPHRPLP-----SQPTLVLILDQVRDPGNAGTLLRTAEAAGVDLVLLAPGTVDPFNEKVIRAGMGAHFRLP-LRICESWEQLAQQL------------------PPEMILYRAEAEAQTPYDQVDWRRPAALVIGGEAAGPSDAARQR---------THAIAIPMQGQVESLNAAVAGAVILFEAARQRR 258
BLAST of NO28G00260 vs. NCBI_GenBank
Match: ABX07268.1 (tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus DSM 785]) HSP 1 Score: 144.8 bits (364), Expect = 6.400e-31 Identity = 99/294 (33.67%), Postives = 153/294 (52.04%), Query Frame = 0 Query: 147 LVTSSDNGKIKMWRA-WKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMK 440 L+TS+ N +K R+ + +K+R + ++EG RLV +A+ + + V + T RG LL L+ LP++ T TPA++A SD +PQG++AVIP P + +L+LDG+QDPGNVGTL+R+A GV +++ + + D W PK +R+ MG F+ P I + +W A I ++ YD+ D T+PTVLI+GNE G+S + IP++ +ESLNAA AG++++ E ARQRR+K Sbjct: 5 LITSTANHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEALNFATPSLLLYVPEQLASTERGQQLLDLIAQLPNAFAT--TPAILAGLSDVETPQGIIAVIPMPQFT------SQSASLILMLDGVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRSGMGVHFRLP-IVDGLNWETALPLIEHCQQRFAAVQDSPL------------------SYDQADLTQPTVLIIGNEANGVS---------ATTLSYSSTITIPMLGSLESLNAAVAGSVLLFEAARQRRVK 262
BLAST of NO28G00260 vs. NCBI_GenBank
Match: WP_081886987.1 (RNA methyltransferase [Thermorudis peleae]) HSP 1 Score: 144.8 bits (364), Expect = 6.400e-31 Identity = 99/292 (33.90%), Postives = 149/292 (51.03%), Query Frame = 0 Query: 148 VTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMK 440 +TS N ++ R+ + + RDR+ L+EG R++ DA+ AG P + PE P SL+ + + +A P +++ +DTV+PQG++A+ P P LP LVLD +QDPGNVGT++RTA+G GV + L + DP+ PK +RA+ GA F+ P + + + + +R R YD +DWTR TVL++G+E G+S +R L + IPL G+ESLN A AGAI++ E ARQRR + Sbjct: 25 ITSPANPVVRYARSLLRPRMRDRERAFLVEGPRIIYDALAAGIAPRVLFYVPERLSLPE-QSLIDEAARHGTRVIAVA-PPILSLITDTVTPQGMVAIFPLP--DLPLAIPKDQSALFLVLDRIQDPGNVGTILRTALGAGVHAVFLTEGTADPFAPKVVRAAAGAHFRLPILPLDPAHPDPRI-LRCAQRLAAEVKSS-------------------HSYDAIDWTRDTVLVLGSEAHGISSALRPL--------LTGSVAIPLAGGLESLNVAIAGAILLFEAARQRRRR 284
BLAST of NO28G00260 vs. NCBI_GenBank
Match: PKO22518.1 (RNA methyltransferase [Chloroflexi bacterium HGW-Chloroflexi-1]) HSP 1 Score: 144.8 bits (364), Expect = 6.400e-31 Identity = 106/297 (35.69%), Postives = 150/297 (50.51%), Query Frame = 0 Query: 147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTP---IHVLVSPEAFRTPRGPSLLALLPSLPSSAVTL--ATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRM 439 ++TS+DN K+K+ RA +++ R++ L EG RL++D M AG TP V +P+A RT +ALL + ++ V + +PA+ + SDTV+ QGV+AV P +P +LVLD ++DPGN+GT++R+A GV ++L+ DPW PK LRA MGA F+ + SWAE G + GR YDRVDWT L VG E G S E L G IP+ ESLN A A +++ E+ARQRR+ Sbjct: 1 MITSADNPKVKVARALLQRRGREQAGQCLAEGVRLIEDVMRAGATPALIFFVAPAPDATRT------MALLAAARTADVPVWELSPAVFGTLSDTVTSQGVIAVAP-----IPPAAPGGDADPILVLDQVRDPGNLGTILRSAEAAGVARLLLVRGCVDPWSPKVLRAGMGAHFRLS-LQSGVSWAE--VGRQLAGR-----------------LLWLADVRGDSAYDRVDWTARCALAVGGETMGFSAEA-TALAAG-------RVVIPMAGATESLNVAMAATVLLFEIARQRRL 258
BLAST of NO28G00260 vs. NCBI_GenBank
Match: GAP61810.1 (RNA methyltransferase, TrmH family [Ardenticatena maritima]) HSP 1 Score: 143.7 bits (361), Expect = 1.400e-30 Identity = 104/295 (35.25%), Postives = 144/295 (48.81%), Query Frame = 0 Query: 147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEA-FRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMKA 441 ++TS N ++K RA +++ R+R+ +LLEG RLV DA +AG V+ EA F T A +P S L + ++ + SDTV+PQG++AV RP + P +L+ D ++DPGN+GTL+R A G GV ++L + D W PK LRA MGA F+ P + +W E + Y VDWT PTVLIVG E G+ E R A IPL R +ESLNAA AG +I+ E RQR M++ Sbjct: 1 MITSLANPRVKAARALHRRRMREREGKILLEGARLVHDAFQAG-------VAFEALFYT---SDQAAHIPEALRSCAWLVSEEVMQALSDTVTPQGIVAVAERPQLAWP-----TSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLP-VRAGLTWEEIAQAVNG-------------------LTVYVADARGAVRYFDVDWTAPTVLIVGGETEGIGEAARALAH--------TAVAIPLAREVESLNAAMAGTVILFEARRQRLMRS 252
BLAST of NO28G00260 vs. NCBI_GenBank
Match: KPL87924.1 (hypothetical protein SE16_10365 [Ardenticatena maritima]) HSP 1 Score: 143.7 bits (361), Expect = 1.400e-30 Identity = 104/295 (35.25%), Postives = 144/295 (48.81%), Query Frame = 0 Query: 147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEA-FRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMKA 441 ++TS N ++K RA +++ R+R+ +LLEG RLV DA +AG V+ EA F T A +P S L + ++ + SDTV+PQG++AV RP + P +L+ D ++DPGN+GTL+R A G GV ++L + D W PK LRA MGA F+ P + +W E + Y VDWT PTVLIVG E G+ E R A IPL R +ESLNAA AG +I+ E RQR M++ Sbjct: 3 MITSLANPRVKAARALHRRRMREREGKILLEGARLVHDAFQAG-------VAFEALFYT---SDQAAHIPEALRSCAWLVSEEVMQALSDTVTPQGIVAVAERPQLAWP-----TSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLP-VRAGLTWEEIAQAVNG-------------------LTVYVADARGAVRYFDVDWTAPTVLIVGGETEGIGEAARALAH--------TAVAIPLAREVESLNAAMAGTVILFEARRQRLMRS 254
BLAST of NO28G00260 vs. NCBI_GenBank
Match: WP_082373835.1 (RNA methyltransferase [Ardenticatena maritima]) HSP 1 Score: 143.7 bits (361), Expect = 1.400e-30 Identity = 104/295 (35.25%), Postives = 144/295 (48.81%), Query Frame = 0 Query: 147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEA-FRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMKA 441 ++TS N ++K RA +++ R+R+ +LLEG RLV DA +AG V+ EA F T A +P S L + ++ + SDTV+PQG++AV RP + P +L+ D ++DPGN+GTL+R A G GV ++L + D W PK LRA MGA F+ P + +W E + Y VDWT PTVLIVG E G+ E R A IPL R +ESLNAA AG +I+ E RQR M++ Sbjct: 22 MITSLANPRVKAARALHRRRMREREGKILLEGARLVHDAFQAG-------VAFEALFYT---SDQAAHIPEALRSCAWLVSEEVMQALSDTVTPQGIVAVAERPQLAWP-----TSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLP-VRAGLTWEEIAQAVNG-------------------LTVYVADARGAVRYFDVDWTAPTVLIVGGETEGIGEAARALAH--------TAVAIPLAREVESLNAAMAGTVILFEARRQRLMRS 273 The following BLAST results are available for this feature:
BLAST of NO28G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G00260 ID=NO28G00260|Name=NO28G00260|organism=Nannochloropsis oceanica|type=gene|length=2604bpback to top protein sequence of NO28G00260.1 >NO28G00260.1-protein ID=NO28G00260.1-protein|Name=NO28G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bpback to top Synonyms
Publications
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