NO28G00260, NO28G00260 (gene) Nannochloropsis oceanica

Overview
NameNO28G00260
Unique NameNO28G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2604
Alignment locationchr28:100524..103127 +

Link to JBrowse

Properties
Property NameValue
DescriptiontRNA/rRNA methyltransferase (SpoU)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:100524..103127 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0032259methylation
GO:0006396RNA processing
GO:0001510RNA methylation
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding
GO:0008168methyltransferase activity
GO:0016740transferase activity
GO:0008173RNA methyltransferase activity
GO:0008168methyltransferase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR029028Alpha/beta_knot_MTases
IPR001537SpoU_MeTrfase
IPR013123SpoU_subst-bd
Homology
BLAST of NO28G00260 vs. NCBI_GenBank
Match: CBJ29793.1 (tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus])

HSP 1 Score: 196.4 bits (498), Expect = 1.900e-46
Identity = 122/298 (40.94%), Postives = 164/298 (55.03%), Query Frame = 0
Query:  140 WRKETAIL-VTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQR 437
            WR     L +TS+ N K+K+ R++ K++ RD    +L EGHRLV D +E G TP  V+VSPEA R   GP L A L +L +  V +A   +V    DTV+ QGV+A++ RP   LP          VL+ DG+QDPGN+GTL+RTA G G   +VL     D W PK +RASMGA+F+ P +    SW E    +R+RG +                         +  +D  DWT P+ L+VG E  GLS+  R  L+ GG  G+     +PL  G+ESLNAA AGAI++ E  RQR
Sbjct:   57 WRDRGGTLDITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADVVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLP-----PTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSL-RLESWQEVVELMRARGIR----------------MYAADGGARLSHFD-ADWTSPSALVVGAEARGLSDAARLELESGGIAGV----SVPLEGGVESLNAAVAGAIVLGEAQRQR 327          
BLAST of NO28G00260 vs. NCBI_GenBank
Match: OSX81455.1 (hypothetical protein BU14_0014s0009 [Porphyra umbilicalis])

HSP 1 Score: 162.5 bits (410), Expect = 3.000e-36
Identity = 113/310 (36.45%), Postives = 161/310 (51.94%), Query Frame = 0
Query:  143 ETAILVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGH--TPIHVLVSPEAFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFIT-----EATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAA----CIPLVRGIESLNAAAAGAIIMSEVARQRRMKAG 442
            + A+ V S+ N +IK  R   +++ R+R+ ++LLEGHRLV DA+ A     P+H +V+         P+ L+    +   A+ +ATP +VAS  DTV+PQGV+AV+ RPS+++           +L LDG+ DPGNVGTL+R+A   G   +VL     D W PKALRA MGA  + P +      E  +WA  + G+R R   G                        +  YD VDW  PTVL+VG E             EG S  L+ AA     IP++  +ESLNAA AG++++ E  RQR   +G
Sbjct:   87 QDAVEVVSTRNPRIKAVRHLLRRRMREREGLLLLEGHRLVVDALGAARPAAPVHTVVATRQAAARLWPA-LSTATGVARDALLVATPDVVASVCDTVTPQGVVAVVGRPSTTV-----VPGSTLLLALDGVADPGNVGTLLRSAAAAGADGVVLTKGCADVWSPKALRAGMGAQLRLPVLAGLEPEEVVAWARGR-GLRLRVADGS----------------------AVMAYDGVDWAAPTVLVVGGEA------------EGPSAALLAAADDVVAIPMLGEVESLNAAIAGSVVLYEARRQRSEASG 355          
BLAST of NO28G00260 vs. NCBI_GenBank
Match: XP_005711212.1 (unnamed protein product [Chondrus crispus] >CDF40918.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 154.1 bits (388), Expect = 1.100e-33
Identity = 104/291 (35.74%), Postives = 150/291 (51.55%), Query Frame = 0
Query:  148 VTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSS--AVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQR 437
            +TS+ N  +K+ R+  +++ RD++ ++LLEG RL++DA+ A   P  +  S +  R  R  ++ ALL  +  S  A  L    ++ S  +TVSPQGV+AV+ RP+  LP           LV D ++DPGNVGTL+R+A G GV  +++ H   DPWG K LRA MGA F+ P +    SW E    +   G                            E+Y +VDW  P  ++VG E  G  E   +       E   R   IPL  G+ESLNAA AG++++ EV RQR
Sbjct:   35 LTSARNPHLKLARSLLRRRHRDKNNLILLEGQRLIEDALSASFAPHQLFYSDKLLR--RSAAMGALLADVRRSGCAPMLVAEPIMRSLCNTVSPQGVVAVLERPALPLP-----DSGTLALVCDEVRDPGNVGTLLRSAAGAGVDAVLMTHGCADPWGLKVLRAGMGAHFRLP-VQVDQSWDEVMQVVHKWG------------------CEVSVADGGGEDYAKVDWCGPAAIVVGGEANGPGERAFQ-------EAQGRVVGIPLCSGMESLNAAVAGSVVLFEVRRQR 292          
BLAST of NO28G00260 vs. NCBI_GenBank
Match: OUC09640.1 (hypothetical protein RY27_01620 [Litorilinea aerophila])

HSP 1 Score: 154.1 bits (388), Expect = 1.100e-33
Identity = 108/293 (36.86%), Postives = 146/293 (49.83%), Query Frame = 0
Query:  147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSSAV--TLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRR 438
            ++TS+ N +IK  R   +++ R     +LLEG RLV+DA +AG  P  VL  PEA       +   LL  L    V     +P + AS SDTV+PQG+LAV+P P   LP          VL+LD ++DPGN GTL+RTA   GV  ++L   + DP+  K +RA MGA F+ P +    SW +    +                                  YD+VDW RP  L++G E AG S+  R+R           A  IP+   +ESLNAA AGA+I+ E ARQRR
Sbjct:    1 MITSTSNPRIKEIRKLHRRRHRHESGRILLEGVRLVEDATQAGVRPEMVLYVPEAVAGQERAA--RLLQQLQEQGVECLACSPEVFASVSDTVTPQGILAVVPLPHRPLP-----SQPTLVLILDQVRDPGNAGTLLRTAEAAGVDLVLLAPGTVDPFNEKVIRAGMGAHFRLP-LRICESWEQLAQQL------------------PPEMILYRAEAEAQTPYDQVDWRRPAALVIGGEAAGPSDAARQR---------THAIAIPMQGQVESLNAAVAGAVILFEAARQRR 258          
BLAST of NO28G00260 vs. NCBI_GenBank
Match: ABX07268.1 (tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus DSM 785])

HSP 1 Score: 144.8 bits (364), Expect = 6.400e-31
Identity = 99/294 (33.67%), Postives = 153/294 (52.04%), Query Frame = 0
Query:  147 LVTSSDNGKIKMWRA-WKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMK 440
            L+TS+ N  +K  R+  + +K+R  +   ++EG RLV +A+      + + V  +   T RG  LL L+  LP++  T  TPA++A  SD  +PQG++AVIP P  +            +L+LDG+QDPGNVGTL+R+A   GV +++ +  + D W PK +R+ MG  F+ P I +  +W  A   I    ++                            YD+ D T+PTVLI+GNE  G+S           +        IP++  +ESLNAA AG++++ E ARQRR+K
Sbjct:    5 LITSTANHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEALNFATPSLLLYVPEQLASTERGQQLLDLIAQLPNAFAT--TPAILAGLSDVETPQGIIAVIPMPQFT------SQSASLILMLDGVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRSGMGVHFRLP-IVDGLNWETALPLIEHCQQRFAAVQDSPL------------------SYDQADLTQPTVLIIGNEANGVS---------ATTLSYSSTITIPMLGSLESLNAAVAGSVLLFEAARQRRVK 262          
BLAST of NO28G00260 vs. NCBI_GenBank
Match: WP_081886987.1 (RNA methyltransferase [Thermorudis peleae])

HSP 1 Score: 144.8 bits (364), Expect = 6.400e-31
Identity = 99/292 (33.90%), Postives = 149/292 (51.03%), Query Frame = 0
Query:  148 VTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMK 440
            +TS  N  ++  R+  + + RDR+   L+EG R++ DA+ AG  P  +   PE    P   SL+       +  + +A P +++  +DTV+PQG++A+ P P   LP           LVLD +QDPGNVGT++RTA+G GV  + L   + DP+ PK +RA+ GA F+ P +    +  + +  +R   R                             YD +DWTR TVL++G+E  G+S  +R          L  +  IPL  G+ESLN A AGAI++ E ARQRR +
Sbjct:   25 ITSPANPVVRYARSLLRPRMRDRERAFLVEGPRIIYDALAAGIAPRVLFYVPERLSLPE-QSLIDEAARHGTRVIAVA-PPILSLITDTVTPQGMVAIFPLP--DLPLAIPKDQSALFLVLDRIQDPGNVGTILRTALGAGVHAVFLTEGTADPFAPKVVRAAAGAHFRLPILPLDPAHPDPRI-LRCAQRLAAEVKSS-------------------HSYDAIDWTRDTVLVLGSEAHGISSALRPL--------LTGSVAIPLAGGLESLNVAIAGAILLFEAARQRRRR 284          
BLAST of NO28G00260 vs. NCBI_GenBank
Match: PKO22518.1 (RNA methyltransferase [Chloroflexi bacterium HGW-Chloroflexi-1])

HSP 1 Score: 144.8 bits (364), Expect = 6.400e-31
Identity = 106/297 (35.69%), Postives = 150/297 (50.51%), Query Frame = 0
Query:  147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTP---IHVLVSPEAFRTPRGPSLLALLPSLPSSAVTL--ATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRM 439
            ++TS+DN K+K+ RA  +++ R++    L EG RL++D M AG TP     V  +P+A RT      +ALL +  ++ V +   +PA+  + SDTV+ QGV+AV P     +P          +LVLD ++DPGN+GT++R+A   GV  ++L+    DPW PK LRA MGA F+   +    SWAE   G +  GR                             YDRVDWT    L VG E  G S E    L  G          IP+    ESLN A A  +++ E+ARQRR+
Sbjct:    1 MITSADNPKVKVARALLQRRGREQAGQCLAEGVRLIEDVMRAGATPALIFFVAPAPDATRT------MALLAAARTADVPVWELSPAVFGTLSDTVTSQGVIAVAP-----IPPAAPGGDADPILVLDQVRDPGNLGTILRSAEAAGVARLLLVRGCVDPWSPKVLRAGMGAHFRLS-LQSGVSWAE--VGRQLAGR-----------------LLWLADVRGDSAYDRVDWTARCALAVGGETMGFSAEA-TALAAG-------RVVIPMAGATESLNVAMAATVLLFEIARQRRL 258          
BLAST of NO28G00260 vs. NCBI_GenBank
Match: GAP61810.1 (RNA methyltransferase, TrmH family [Ardenticatena maritima])

HSP 1 Score: 143.7 bits (361), Expect = 1.400e-30
Identity = 104/295 (35.25%), Postives = 144/295 (48.81%), Query Frame = 0
Query:  147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEA-FRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMKA 441
            ++TS  N ++K  RA  +++ R+R+  +LLEG RLV DA +AG       V+ EA F T       A +P    S   L +  ++ + SDTV+PQG++AV  RP  + P          +L+ D ++DPGN+GTL+R A G GV  ++L   + D W PK LRA MGA F+ P +    +W E    +                                  Y  VDWT PTVLIVG E  G+ E  R             A  IPL R +ESLNAA AG +I+ E  RQR M++
Sbjct:    1 MITSLANPRVKAARALHRRRMREREGKILLEGARLVHDAFQAG-------VAFEALFYT---SDQAAHIPEALRSCAWLVSEEVMQALSDTVTPQGIVAVAERPQLAWP-----TSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLP-VRAGLTWEEIAQAVNG-------------------LTVYVADARGAVRYFDVDWTAPTVLIVGGETEGIGEAARALAH--------TAVAIPLAREVESLNAAMAGTVILFEARRQRLMRS 252          
BLAST of NO28G00260 vs. NCBI_GenBank
Match: KPL87924.1 (hypothetical protein SE16_10365 [Ardenticatena maritima])

HSP 1 Score: 143.7 bits (361), Expect = 1.400e-30
Identity = 104/295 (35.25%), Postives = 144/295 (48.81%), Query Frame = 0
Query:  147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEA-FRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMKA 441
            ++TS  N ++K  RA  +++ R+R+  +LLEG RLV DA +AG       V+ EA F T       A +P    S   L +  ++ + SDTV+PQG++AV  RP  + P          +L+ D ++DPGN+GTL+R A G GV  ++L   + D W PK LRA MGA F+ P +    +W E    +                                  Y  VDWT PTVLIVG E  G+ E  R             A  IPL R +ESLNAA AG +I+ E  RQR M++
Sbjct:    3 MITSLANPRVKAARALHRRRMREREGKILLEGARLVHDAFQAG-------VAFEALFYT---SDQAAHIPEALRSCAWLVSEEVMQALSDTVTPQGIVAVAERPQLAWP-----TSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLP-VRAGLTWEEIAQAVNG-------------------LTVYVADARGAVRYFDVDWTAPTVLIVGGETEGIGEAARALAH--------TAVAIPLAREVESLNAAMAGTVILFEARRQRLMRS 254          
BLAST of NO28G00260 vs. NCBI_GenBank
Match: WP_082373835.1 (RNA methyltransferase [Ardenticatena maritima])

HSP 1 Score: 143.7 bits (361), Expect = 1.400e-30
Identity = 104/295 (35.25%), Postives = 144/295 (48.81%), Query Frame = 0
Query:  147 LVTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEA-FRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPXXXXXXXXXXVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGRXXXXXXXXXXXXXXXXXXXXXXIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMKA 441
            ++TS  N ++K  RA  +++ R+R+  +LLEG RLV DA +AG       V+ EA F T       A +P    S   L +  ++ + SDTV+PQG++AV  RP  + P          +L+ D ++DPGN+GTL+R A G GV  ++L   + D W PK LRA MGA F+ P +    +W E    +                                  Y  VDWT PTVLIVG E  G+ E  R             A  IPL R +ESLNAA AG +I+ E  RQR M++
Sbjct:   22 MITSLANPRVKAARALHRRRMREREGKILLEGARLVHDAFQAG-------VAFEALFYT---SDQAAHIPEALRSCAWLVSEEVMQALSDTVTPQGIVAVAERPQLAWP-----TSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLP-VRAGLTWEEIAQAVNG-------------------LTVYVADARGAVRYFDVDWTAPTVLIVGGETEGIGEAARALAH--------TAVAIPLAREVESLNAAMAGTVILFEARRQRLMRS 273          
The following BLAST results are available for this feature:
BLAST of NO28G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ29793.11.900e-4640.94tRNA/rRNA methyltransferase (SpoU) [Ectocarpus sil... [more]
OSX81455.13.000e-3636.45hypothetical protein BU14_0014s0009 [Porphyra umbi... [more]
XP_005711212.11.100e-3335.74unnamed protein product [Chondrus crispus] >CDF409... [more]
OUC09640.11.100e-3336.86hypothetical protein RY27_01620 [Litorilinea aerop... [more]
ABX07268.16.400e-3133.67tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon ... [more]
WP_081886987.16.400e-3133.90RNA methyltransferase [Thermorudis peleae][more]
PKO22518.16.400e-3135.69RNA methyltransferase [Chloroflexi bacterium HGW-C... [more]
GAP61810.11.400e-3035.25RNA methyltransferase, TrmH family [Ardenticatena ... [more]
KPL87924.11.400e-3035.25hypothetical protein SE16_10365 [Ardenticatena mar... [more]
WP_082373835.11.400e-3035.25RNA methyltransferase [Ardenticatena maritima][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR002ncniR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00260.1NO28G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00260.1NO28G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00260 ID=NO28G00260|Name=NO28G00260|organism=Nannochloropsis oceanica|type=gene|length=2604bp
ATGTGGTCGCGGCGCCTTTCCTTTTCCTATTCGGCGTCCTCCTCCCCTGC
TTCCTCCTCCCTAGCCTCCACCTCCTCTCTTCTCCTGCGACGACCATCCC
ACATCACCCAGGCAATAACACGTCCTCCCCACCTAGGCGCCCTCATCCTC
TGCATCCTTGCCCAAAGCACGGTTGCAGTAGCCTTTTCCATTCTTTCTCT
TACATACCAGCATCAAGGCCACCGACAGCATGGTTATCAGCATCAACACT
ACAAGCGGCTGCCCTCGTCCTTACCCCTGCCCCTCGCTTCCTCCCCTTCC
TTCTCCTTCCCCTCCTTCTCCTCTATTGTACCCCTACATGGCACGACCCC
CAGGCCTTTCGCTCTGTCCACCCTCTCCTTCTCCTCCTCGTCTTCGTCGT
CCTCCTCTCAAAGCCTGTGGAGGAAAGAGACAGCGATTTTGGTCACCAGT
AGCGACAACGGCAAGATCAAGATGTGGCGCGCGTGgtatggagggaagga
gggaaggatcaagggagagagagctaagctgattgatgaagtaggaacga
gaaatactgagaagccaccgattttcctcttatatatggacatatttgcg
acttacacccacccatttattcatatcggcccaacgacgtagGAAGAAGA
AGAAGGAGAGGGATAGAGATGCTGTCGTCTTGCTGGAGGGACATCGACTG
GTGCAGGATGCAATGGAGgtaggtaggtagatagggagggagggaggtag
atagggaggaagggagggcgagagagagtgaatgaatggtgttaggggag
ggatggagggaggagcggagggaagaagggaaggaaggaagaaggatgat
taaaatgtttccctctcccttcattgtcgattttcatccctgcgaaactc
atgcacgcacctttccctccctccctctctctctccctccctcatccact
ctcatcctccctccctcctcaccctccctcccttccccccttactcaaca
attctcatcctcccttctcaccctccccccacccctcccttacatgtcct
ttctcatcctccctcttcaccctccctcccttccccccttactcaacaac
tctcatcctccctcctcaccttgtctcccaccctccctccctcacctccc
tccttttttccctctctcagGCAGGGCACACGCCGATACACGTACTTGTA
TCCCCTGAGGCCTTTCGGACTCCCCGCGGTCCCTCCCTCCTCGCCCTCCT
CCCCTCCCTCCCTTCCTCCGCCGTGACCTTGGCAACGCCCGCATTGGTGG
CCTCAGCCTCGGACACGGTCTCTCCGCAGgtagggagggagagagggagg
gagggagggacggatgtttgtatagctttgagtgatgagagaggggtgat
gagaatgagggagggatggagggagggatagagggaaggaggaagggaag
gaggctcatgcttctgtcatctgcgaaatccaaactctcctcccccctcc
ctccctccctcccgccctccctccatccctccctccctccaaataacagG
GTGTGCTTGCCGTCATTCCCCGGCCCTCCTCCTCCCTCCCTCCCTCTCTC
CCTCCCTCCCTCCCTCCCTTCGTCCTCGTCCTCGACGGCATGCAAGATCC
TGGCAACGTCGGCACATTAATCCGCACTGCCGTGGGCTGTGGAGTGACAG
AGgtacgccctcctcccctccctccctccctccctccctccttccctccc
ttttccattcctcttttatgccgatggtggagtgatggaggtgtgacgcc
ctccacccctccctcctcccccctctccctccctttctccctccctccct
ctcctcttccgtcctctttttatttcccccttcacctgatgtcacagcct
tcctcctctccctcccttcctccctccctccttcagATTGTCCTCATCCA
CGACTCGTGTGACCCGTGGGGACCGAAAGCTCTCCGTGCTTCTATGGGCG
CTACGTTCAAAGgttctccctccctccctccctttcttccttctctctcc
ctcttccgttccgtcctgtctactctttctctcactctcgtcagaatgat
tctcgtcttcgtctttctatcattttttctttctcttcttctttctcatc
aattttcaccttaccctccctccctccctcccatccccccctagCCCCCT
TCATCACCGAAGCCACCTCCTGGGCTGAGGCACAAGCAGGCATTCGGTCA
CGAGGGAGGAAGGGAGGGAGGGAGGAGGAGAAATGGGAGTGGTGGGCGGC
GGATGGAGGGGGGGAGGAAATGAATGAGGGAGGGGGGATAGAGGAGTATG
ATAGAGTGGATTGGACTCGACCGACTGTCTTAATCGTCGGAAATGAAGGC
GCTGGCTTGAGTGAGGAAGTGAGGGAGAGATTGAAGGAAGGAGGGAGTGA
GGGGCTGATGCGTGCGGCATGCATCCCCTTGGTAAGGGGGATTGAAAGCC
TTAATGCTGCAGCGGCCGGGGCAATAATCATGAGCGAGGTGGCGCGGCAA
CGAAGGATGAAGGCGGGAGAGAGGGAGGTGGAAAATGAGATGATTGATTT
ATGA
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protein sequence of NO28G00260.1

>NO28G00260.1-protein ID=NO28G00260.1-protein|Name=NO28G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MWSRRLSFSYSASSSPASSSLASTSSLLLRRPSHITQAITRPPHLGALIL
CILAQSTVAVAFSILSLTYQHQGHRQHGYQHQHYKRLPSSLPLPLASSPS
FSFPSFSSIVPLHGTTPRPFALSTLSFSSSSSSSSSQSLWRKETAILVTS
SDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPE
AFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPS
SSLPPSLPPSLPPFVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCD
PWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGREEEKWEWW
AADGGGEEMNEGGGIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGG
SEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMKAGEREVENEMI
DL*
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Synonyms
Publications