NO28G00260.1, NO28G00260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00260.1
Unique NameNO28G00260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr28:100524..103127 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:100524..103127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00260.1 vs.
Match: CBJ29793.1 (tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus])

HSP 1 Score: 206.8 bits (525), Expect = 1.400e-49
Identity = 132/309 (42.72%), Postives = 179/309 (57.93%), Query Frame = 0 
Query:  129 SSSSSSSSQSLWRKETAIL-VTSSDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPEAFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPSSSLPPSLPPSLPPFVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCDPWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGREEEKWEWWAADGGGEEMNEGGGIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGGSEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQR 437
            +++ SS    LWR     L +TS+ N K+K+ R++ K++ RD    +L EGHRLV D +E G TP  V+VSPEA R   GP L A L +L +  V +A   +V    DTV+ QGV+A++ RP   LPP+L       VL+ DG+QDPGN+GTL+RTA G G   +VL     D W PK +RASMGA+F+ P +    SW E    +R+RG +          +AADGG         +  +D  DWT P+ L+VG E  GLS+  R  L+ GG  G+     +PL  G+ESLNAA AGAI++ E  RQR
Sbjct:   46 AAAMSSLPYGLWRDRGGTLDITSAQNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSPEALRASPGPRLQAALETLSADVVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTLQT-----VLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSL-RLESWQEVVELMRARGIR---------MYAADGGAR-------LSHFD-ADWTSPSALVVGAEARGLSDAARLELESGGIAGV----SVPLEGGVESLNAAVAGAIVLGEAQRQR 327
The following BLAST results are available for this feature:
BLAST of NO28G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ29793.11.400e-4942.72tRNA/rRNA methyltransferase (SpoU) [Ectocarpus sil... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00260NO28G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00260.1NO28G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00260.1.cds1NO28G00260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00260.1.cds2NO28G00260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00260.1.cds3NO28G00260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00260.1.cds4NO28G00260.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00260.1.cds5NO28G00260.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00260.1.cds6NO28G00260.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00260.1 ID=NO28G00260.1|Name=NO28G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ATGTGGTCGCGGCGCCTTTCCTTTTCCTATTCGGCGTCCTCCTCCCCTGC
TTCCTCCTCCCTAGCCTCCACCTCCTCTCTTCTCCTGCGACGACCATCCC
ACATCACCCAGGCAATAACACGTCCTCCCCACCTAGGCGCCCTCATCCTC
TGCATCCTTGCCCAAAGCACGGTTGCAGTAGCCTTTTCCATTCTTTCTCT
TACATACCAGCATCAAGGCCACCGACAGCATGGTTATCAGCATCAACACT
ACAAGCGGCTGCCCTCGTCCTTACCCCTGCCCCTCGCTTCCTCCCCTTCC
TTCTCCTTCCCCTCCTTCTCCTCTATTGTACCCCTACATGGCACGACCCC
CAGGCCTTTCGCTCTGTCCACCCTCTCCTTCTCCTCCTCGTCTTCGTCGT
CCTCCTCTCAAAGCCTGTGGAGGAAAGAGACAGCGATTTTGGTCACCAGT
AGCGACAACGGCAAGATCAAGATGTGGCGCGCGTGGAAGAAGAAGAAGGA
GAGGGATAGAGATGCTGTCGTCTTGCTGGAGGGACATCGACTGGTGCAGG
ATGCAATGGAGGCAGGGCACACGCCGATACACGTACTTGTATCCCCTGAG
GCCTTTCGGACTCCCCGCGGTCCCTCCCTCCTCGCCCTCCTCCCCTCCCT
CCCTTCCTCCGCCGTGACCTTGGCAACGCCCGCATTGGTGGCCTCAGCCT
CGGACACGGTCTCTCCGCAGGGTGTGCTTGCCGTCATTCCCCGGCCCTCC
TCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTTCGTCCTCGT
CCTCGACGGCATGCAAGATCCTGGCAACGTCGGCACATTAATCCGCACTG
CCGTGGGCTGTGGAGTGACAGAGATTGTCCTCATCCACGACTCGTGTGAC
CCGTGGGGACCGAAAGCTCTCCGTGCTTCTATGGGCGCTACGTTCAAAGC
CCCCTTCATCACCGAAGCCACCTCCTGGGCTGAGGCACAAGCAGGCATTC
GGTCACGAGGGAGGAAGGGAGGGAGGGAGGAGGAGAAATGGGAGTGGTGG
GCGGCGGATGGAGGGGGGGAGGAAATGAATGAGGGAGGGGGGATAGAGGA
GTATGATAGAGTGGATTGGACTCGACCGACTGTCTTAATCGTCGGAAATG
AAGGCGCTGGCTTGAGTGAGGAAGTGAGGGAGAGATTGAAGGAAGGAGGG
AGTGAGGGGCTGATGCGTGCGGCATGCATCCCCTTGGTAAGGGGGATTGA
AAGCCTTAATGCTGCAGCGGCCGGGGCAATAATCATGAGCGAGGTGGCGC
GGCAACGAAGGATGAAGGCGGGAGAGAGGGAGGTGGAAAATGAGATGATT
GATTTATGA
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protein sequence of NO28G00260.1

>NO28G00260.1-protein ID=NO28G00260.1-protein|Name=NO28G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MWSRRLSFSYSASSSPASSSLASTSSLLLRRPSHITQAITRPPHLGALIL
CILAQSTVAVAFSILSLTYQHQGHRQHGYQHQHYKRLPSSLPLPLASSPS
FSFPSFSSIVPLHGTTPRPFALSTLSFSSSSSSSSSQSLWRKETAILVTS
SDNGKIKMWRAWKKKKERDRDAVVLLEGHRLVQDAMEAGHTPIHVLVSPE
AFRTPRGPSLLALLPSLPSSAVTLATPALVASASDTVSPQGVLAVIPRPS
SSLPPSLPPSLPPFVLVLDGMQDPGNVGTLIRTAVGCGVTEIVLIHDSCD
PWGPKALRASMGATFKAPFITEATSWAEAQAGIRSRGRKGGREEEKWEWW
AADGGGEEMNEGGGIEEYDRVDWTRPTVLIVGNEGAGLSEEVRERLKEGG
SEGLMRAACIPLVRGIESLNAAAAGAIIMSEVARQRRMKAGEREVENEMI
DL*
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mRNA from alignment at chr28:100524..103127+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00260.1 ID=NO28G00260.1|Name=NO28G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2604bp|location=Sequence derived from alignment at chr28:100524..103127+ (Nannochloropsis oceanica)
ATGTGGTCGCGGCGCCTTTCCTTTTCCTATTCGGCGTCCTCCTCCCCTGC
TTCCTCCTCCCTAGCCTCCACCTCCTCTCTTCTCCTGCGACGACCATCCC
ACATCACCCAGGCAATAACACGTCCTCCCCACCTAGGCGCCCTCATCCTC
TGCATCCTTGCCCAAAGCACGGTTGCAGTAGCCTTTTCCATTCTTTCTCT
TACATACCAGCATCAAGGCCACCGACAGCATGGTTATCAGCATCAACACT
ACAAGCGGCTGCCCTCGTCCTTACCCCTGCCCCTCGCTTCCTCCCCTTCC
TTCTCCTTCCCCTCCTTCTCCTCTATTGTACCCCTACATGGCACGACCCC
CAGGCCTTTCGCTCTGTCCACCCTCTCCTTCTCCTCCTCGTCTTCGTCGT
CCTCCTCTCAAAGCCTGTGGAGGAAAGAGACAGCGATTTTGGTCACCAGT
AGCGACAACGGCAAGATCAAGATGTGGCGCGCGTGGTATGGAGGGAAGGA
GGGAAGGATCAAGGGAGAGAGAGCTAAGCTGATTGATGAAGTAGGAACGA
GAAATACTGAGAAGCCACCGATTTTCCTCTTATATATGGACATATTTGCG
ACTTACACCCACCCATTTATTCATATCGGCCCAACGACGTAGGAAGAAGA
AGAAGGAGAGGGATAGAGATGCTGTCGTCTTGCTGGAGGGACATCGACTG
GTGCAGGATGCAATGGAGGTAGGTAGGTAGATAGGGAGGGAGGGAGGTAG
ATAGGGAGGAAGGGAGGGCGAGAGAGAGTGAATGAATGGTGTTAGGGGAG
GGATGGAGGGAGGAGCGGAGGGAAGAAGGGAAGGAAGGAAGAAGGATGAT
TAAAATGTTTCCCTCTCCCTTCATTGTCGATTTTCATCCCTGCGAAACTC
ATGCACGCACCTTTCCCTCCCTCCCTCTCTCTCTCCCTCCCTCATCCACT
CTCATCCTCCCTCCCTCCTCACCCTCCCTCCCTTCCCCCCTTACTCAACA
ATTCTCATCCTCCCTTCTCACCCTCCCCCCACCCCTCCCTTACATGTCCT
TTCTCATCCTCCCTCTTCACCCTCCCTCCCTTCCCCCCTTACTCAACAAC
TCTCATCCTCCCTCCTCACCTTGTCTCCCACCCTCCCTCCCTCACCTCCC
TCCTTTTTTCCCTCTCTCAGGCAGGGCACACGCCGATACACGTACTTGTA
TCCCCTGAGGCCTTTCGGACTCCCCGCGGTCCCTCCCTCCTCGCCCTCCT
CCCCTCCCTCCCTTCCTCCGCCGTGACCTTGGCAACGCCCGCATTGGTGG
CCTCAGCCTCGGACACGGTCTCTCCGCAGGTAGGGAGGGAGAGAGGGAGG
GAGGGAGGGACGGATGTTTGTATAGCTTTGAGTGATGAGAGAGGGGTGAT
GAGAATGAGGGAGGGATGGAGGGAGGGATAGAGGGAAGGAGGAAGGGAAG
GAGGCTCATGCTTCTGTCATCTGCGAAATCCAAACTCTCCTCCCCCCTCC
CTCCCTCCCTCCCGCCCTCCCTCCATCCCTCCCTCCCTCCAAATAACAGG
GTGTGCTTGCCGTCATTCCCCGGCCCTCCTCCTCCCTCCCTCCCTCTCTC
CCTCCCTCCCTCCCTCCCTTCGTCCTCGTCCTCGACGGCATGCAAGATCC
TGGCAACGTCGGCACATTAATCCGCACTGCCGTGGGCTGTGGAGTGACAG
AGGTACGCCCTCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCC
TTTTCCATTCCTCTTTTATGCCGATGGTGGAGTGATGGAGGTGTGACGCC
CTCCACCCCTCCCTCCTCCCCCCTCTCCCTCCCTTTCTCCCTCCCTCCCT
CTCCTCTTCCGTCCTCTTTTTATTTCCCCCTTCACCTGATGTCACAGCCT
TCCTCCTCTCCCTCCCTTCCTCCCTCCCTCCTTCAGATTGTCCTCATCCA
CGACTCGTGTGACCCGTGGGGACCGAAAGCTCTCCGTGCTTCTATGGGCG
CTACGTTCAAAGGTTCTCCCTCCCTCCCTCCCTTTCTTCCTTCTCTCTCC
CTCTTCCGTTCCGTCCTGTCTACTCTTTCTCTCACTCTCGTCAGAATGAT
TCTCGTCTTCGTCTTTCTATCATTTTTTCTTTCTCTTCTTCTTTCTCATC
AATTTTCACCTTACCCTCCCTCCCTCCCTCCCATCCCCCCCTAGCCCCCT
TCATCACCGAAGCCACCTCCTGGGCTGAGGCACAAGCAGGCATTCGGTCA
CGAGGGAGGAAGGGAGGGAGGGAGGAGGAGAAATGGGAGTGGTGGGCGGC
GGATGGAGGGGGGGAGGAAATGAATGAGGGAGGGGGGATAGAGGAGTATG
ATAGAGTGGATTGGACTCGACCGACTGTCTTAATCGTCGGAAATGAAGGC
GCTGGCTTGAGTGAGGAAGTGAGGGAGAGATTGAAGGAAGGAGGGAGTGA
GGGGCTGATGCGTGCGGCATGCATCCCCTTGGTAAGGGGGATTGAAAGCC
TTAATGCTGCAGCGGCCGGGGCAATAATCATGAGCGAGGTGGCGCGGCAA
CGAAGGATGAAGGCGGGAGAGAGGGAGGTGGAAAATGAGATGATTGATTT
ATGA
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Coding sequence (CDS) from alignment at chr28:100524..103127+

>NO28G00260.1 ID=NO28G00260.1|Name=NO28G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at chr28:100524..103127+ (Nannochloropsis oceanica)
ATGTGGTCGCGGCGCCTTTCCTTTTCCTATTCGGCGTCCTCCTCCCCTGC
TTCCTCCTCCCTAGCCTCCACCTCCTCTCTTCTCCTGCGACGACCATCCC
ACATCACCCAGGCAATAACACGTCCTCCCCACCTAGGCGCCCTCATCCTC
TGCATCCTTGCCCAAAGCACGGTTGCAGTAGCCTTTTCCATTCTTTCTCT
TACATACCAGCATCAAGGCCACCGACAGCATGGTTATCAGCATCAACACT
ACAAGCGGCTGCCCTCGTCCTTACCCCTGCCCCTCGCTTCCTCCCCTTCC
TTCTCCTTCCCCTCCTTCTCCTCTATTGTACCCCTACATGGCACGACCCC
CAGGCCTTTCGCTCTGTCCACCCTCTCCTTCTCCTCCTCGTCTTCGTCGT
CCTCCTCTCAAAGCCTGTGGAGGAAAGAGACAGCGATTTTGGTCACCAGT
AGCGACAACGGCAAGATCAAGATGTGGCGCGCGTGGAAGAAGAAGAAGGA
GAGGGATAGAGATGCTGTCGTCTTGCTGGAGGGACATCGACTGGTGCAGG
ATGCAATGGAGGCAGGGCACACGCCGATACACGTACTTGTATCCCCTGAG
GCCTTTCGGACTCCCCGCGGTCCCTCCCTCCTCGCCCTCCTCCCCTCCCT
CCCTTCCTCCGCCGTGACCTTGGCAACGCCCGCATTGGTGGCCTCAGCCT
CGGACACGGTCTCTCCGCAGGGTGTGCTTGCCGTCATTCCCCGGCCCTCC
TCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTTCGTCCTCGT
CCTCGACGGCATGCAAGATCCTGGCAACGTCGGCACATTAATCCGCACTG
CCGTGGGCTGTGGAGTGACAGAGATTGTCCTCATCCACGACTCGTGTGAC
CCGTGGGGACCGAAAGCTCTCCGTGCTTCTATGGGCGCTACGTTCAAAGC
CCCCTTCATCACCGAAGCCACCTCCTGGGCTGAGGCACAAGCAGGCATTC
GGTCACGAGGGAGGAAGGGAGGGAGGGAGGAGGAGAAATGGGAGTGGTGG
GCGGCGGATGGAGGGGGGGAGGAAATGAATGAGGGAGGGGGGATAGAGGA
GTATGATAGAGTGGATTGGACTCGACCGACTGTCTTAATCGTCGGAAATG
AAGGCGCTGGCTTGAGTGAGGAAGTGAGGGAGAGATTGAAGGAAGGAGGG
AGTGAGGGGCTGATGCGTGCGGCATGCATCCCCTTGGTAAGGGGGATTGA
AAGCCTTAATGCTGCAGCGGCCGGGGCAATAATCATGAGCGAGGTGGCGC
GGCAACGAAGGATGAAGGCGGGAGAGAGGGAGGTGGAAAATGAGATGATT
GATTTATGA
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Synonyms
Publications