NO28G00170, NO28G00170 (gene) Nannochloropsis oceanica

Overview
NameNO28G00170
Unique NameNO28G00170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2768
Alignment locationchr28:69901..72668 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:69901..72668 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR088ncniR088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|384639gene_11004Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00170.1NO28G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G00170.2NO28G00170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G00170.3NO28G00170.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00170.1NO28G00170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G00170.2NO28G00170.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G00170.3NO28G00170.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00170 ID=NO28G00170|Name=NO28G00170|organism=Nannochloropsis oceanica|type=gene|length=2768bp
CTCTCTCCCTCCCGCCTTCCCACGTCAAGTACACTCAGGACTAAAACACT
TTTGAAAGCCAAGCGTCGTGGCGGGCCAGTGTCGCGGGCTTAAAGGCCGC
AGAAATCGTCACCATCCCTCCCTAACCCCTTTCTTCCTTACTCCTTCCCT
CCTTCCTGACCGCCCTCCCTCCTTCCCCCCATTAGTAGCCATGAGGACCC
TCGTCCTCGTCGTCCTCCTCCTTCTCCCCCTCGTCGATGCTTGGAGGCCT
ACGGCAGGCTGCAGGAGAGCGGCAAGCAGGGGCATGGCTACAACCTGTAT
GCATGTAGAGGGACAGCAGCAACCGCAGGAGCTGGAGGGAAAGAAAAGCA
GGCGAAGAAGCCCGGTGGCTCCTCTTTCTCGAGGCCAGCAGCTTCAGAAT
ATGTTTGTGGCAGCTATAGGCGCGACGACTGCGCTTACTCTTTTGGAAAT
AGATGCTCGTCCGGCGAATGCTGCCATGGgtaagagggagggaggggtgg
atgaatttggagtgcattgcttttagatcccctcgcccatccttccttcc
ttgtctcctttcctctttttcagAGCCCCTCGTCCTACCTGAGCTAGTGA
CGTATGATGATCCGCAGGGAAAGTTCACCTTGAAGGTGCCCAAAGGGTGG
TTTACAAAGCGgtaaggaagggagggagggaggaagggaggggggagagg
gagggagtgagggaaagaagcagtggagggagggagtaagggagagagag
aaaaagggagagagggggggggggagagtgagggaatgagggaaagagtg
agggaatgagggaaagagggagggaatgagggagggagggagggagagag
ggagggagggagggagggagggcgaagggtcaagatctaccctgttctca
tcattttccgtcaaattgattaatttccttttcttttaacgacagAAAGA
ATCCCAAGGGCCCTGATGGCGAAGgtaagcctccctccctccctcccttc
ctccctccctcccttcctccctccctccctccctccctccctccctccct
ccctccctccctccctcccttcctccctccctccctccctcttttccttc
ctcactctgtcccccctccctcttatgttttctctcatatcctatcatgg
atatgatcagcgtcgtgtcgttcctccttctagtctaccattggttcccg
tccatgcccacaacattttccctccctccctcccctccccccttccctcc
ttttagGCCTAATGTTCATCAGCGGTGACTTCAACAAGGCGATCACCATC
TCCATCGAATCGCTCAGACTCAAGGCGTTGATCCGTAGAGGAGgtaggtg
ggtagggagggagggaggtaggttgggagggggggaaaggaaaacaacat
taacctcacgttgtttcacattgccctccccccctccctccctctctccc
ttcctccctccttccctccttccctccctccctccctaagGCACGATGGA
TGCACCTGAGGGGTTGGGTCTTACGTCATGGACAGAGTACGGTAGTGCAG
ACGGGATTGCTGGTCTCCTGGCAGCGCACAAGGAGGCAATGgtagggagg
aagggagggagggaggaagaaacggagggaaagagagcgtcatgcaaggg
agagggagggagcgagggatggaggggaggagggagagagaaagggaagg
agggagggaaggagggagggagggaagaagggaagaagatgcgcaactta
aaaatttctcattcccctatccctccctccctccctccctccctccctcc
ctccctagGTGGGCGCTCCCACCAAGCAAGTCTACAGCGTGTTGGATGAG
ACGATCAAAACAAAGGACGACGCGTTCACTgtacgtcccctccctccctc
cctccctcccttcctccctccctcgcttgctcgctcttttggagagtgtg
acccactcctccttccctccctccctccctccctccctcccttcccccct
tctcttcttttatgggctctatcactcgctaccggattccccgacaaccg
cccctccttccctccctcactccctccttcccttcagTTCGACTTCGAGA
CGGAGGTCCGTGTGGAACGACCCGATCTTCTCATGGCCGAGGTGAGCAAA
GGCCGGAGGAAGGGAGGGAGAGGGGGTGGGAGAAAGGGAAGAAGGAGGAG
ATTAAAGGTTAGGGGGGGGGGAGGGAAGGAAGGAGGGCAAGAGGACATGA
ACAAAGAATTACCATCAAACGCTGTGCTGCCATAGACCGCCACTCCCTCC
CTTCTTTCCTCCCTCCCTCTCTCCCTCCCGTCCTCAGATGGGCGTGGACA
AGCTCAGGCGCCGCACGACATCTCGCGCTCTTTTGTCACCCGGGGACAAC
ACAGTCGTCATCTGGGCGGGTATGAAGGCAGGGAGGGAGAGAGAAAGGAA
GAGAGGGAGAGGTAGACAGCAACCACCAGGTACGACCTTCTTATATCCCT
CCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTGCCTGCCTAGCCGCTCTA
TCGCGTGACTGGGATAGGGGATATAGTCAACTGCTGACCGACGTCGTGAA
CAGCTTAGAGCTCAAGAAGGAGGAGGGAGGGAAGGAGGAAGGGAGGGAGG
AGAAAAAGGCATGAGCGTGTGTGGTGGTCGGATAGACAGTGGTGGAGGAA
GATGGGAAGGGAGGGATGGGGACAAAGCGGATGATGAAAGCAGCAATTAA
AGCACCACGGCAACCGCG
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protein sequence of NO28G00170.1

>NO28G00170.1-protein ID=NO28G00170.1-protein|Name=NO28G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MRTLVLVVLLLLPLVDAWRPTAGCRRAASRGMATTCMHVEGQQQPQELEG
KKSRRRSPVAPLSRGQQLQNMFVAAIGATTALTLLEIDARPANAAMEPLV
LPELVTYDDPQGKFTLKVPKGWFTKRKNPKGPDGEGLMFISGDFNKAITI
SIESLRLKALIRRGGTMDAPEGLGLTSWTEYGSADGIAGLLAAHKEAMVG
APTKQVYSVLDETIKTKDDAFTFDFETEVRVERPDLLMAEMGVDKLRRRT
TSRALLSPGDNTVVIWAAALSRDWDRGYSQLLTDVVNSLELKKEEGGKEE
GREEKKA*
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protein sequence of NO28G00170.2

>NO28G00170.2-protein ID=NO28G00170.2-protein|Name=NO28G00170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MRTLVLVVLLLLPLVDAWRPTAGCRRAASRGMATTCMHVEGQQQPQELEG
KKSRRRSPVAPLSRGQQLQNMFVAAIGATTALTLLEIDARPANAAMEPLV
LPELVTYDDPQGKFTLKVPKGWFTKRKNPKGPDGEGLMFISGDFNKAITI
SIESLRLKALIRRGGTMDAPEGLGLTSWTEYGSADGIAGLLAAHKEAMVG
APTKQVYSVLDETIKTKDDAFTFDFETEVRVERPDLLMAEVSKGRRKGGR
GGGRKGRRRRLKVRGGGGKEGGQEDMNKELPSNAVLP*
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protein sequence of NO28G00170.3

>NO28G00170.3-protein ID=NO28G00170.3-protein|Name=NO28G00170.3|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MRTLVLVVLLLLPLVDAWRPTAGCRRAASRGMATTCMHVEGQQQPQELEG
KKSRRRSPVAPLSRGQQLQNMFVAAIGATTALTLLEIDARPANAAMEPLV
LPELVTYDDPQGKFTLKVPKGWFTKRKNPKGPDGEGLMFISGDFNKAITI
SIESLRLKALIRRGGTMDAPEGLGLTSWTEYGSADGIAGLLAAHKEAMVG
APTKQVYSVLDETIKTKDDAFTFDFETEVRVERPDLLMAEVSKGRRKGGR
GGGRKGRRRRLKVRGGGGKEGGQEDMNKELPSNAVLP*
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Synonyms
Publications