NO28G00170.1, NO28G00170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00170.1
Unique NameNO28G00170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1218
Alignment locationchr28:69901..72668 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:69901..72668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00170.1 vs.
Match: OEU17323.1 (hypothetical protein FRACYDRAFT_217556 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 86.3 bits (212), Expect = 1.800e-13
Identity = 77/229 (33.62%), Postives = 118/229 (51.53%), Query Frame = 0 
Query:   78 ATTALTLLEIDARPANAAMEPLVLPELVTYDDPQGKFTLKVPKGWFTKRKNPKG--PD---GEGL----MFISGDFNKAITISIESLRLKALIRRGGTMDAPEGLGLTSWTEYGSADGIAGLLAAHKEAMVGAPTKQVYSVLDETIKTKDDA-FTFDFETEVRVERPDLLMAEMGVDKLRRRTTSRALLSPGD-NTVVIWAAALSRDWDRGY-SQLLTDVVNSLELKKE 295
            +TTA  ++ + A     A EPL + E V   DP G F+L+VPKG+FT R+  KG  PD   G+G     +F +G+  KA  I++E    + L+   G   A  G  L ++   G+   +A L+   +E    AP K +  VLD    T D    TF  +TE+ V+ P+ L  + G+ +L R T ++  L+  D N + I+A+AL +D+  G     L D VNS +  K+
Sbjct:   48 STTAEVVVAVAATAI--APEPLEMKEFV---DPAGLFSLRVPKGFFTLRRTAKGDLPDKKTGKGRRGSSIFTAGNMAKAEVIAVERYPTRVLLEENGI--AATG-NLDTFPGIGNPKAVANLIILRREKE--APNKGL-RVLDSIEVTPDGKELTFRIKTEIDVQNPEALFEQEGISQLFRITVAKCSLNSDDGNIMAIFASALEQDFTNGVDGPALVDSVNSFQAMKQ 265
The following BLAST results are available for this feature:
BLAST of NO28G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEU17323.11.800e-1333.62hypothetical protein FRACYDRAFT_217556 [Fragilario... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00170NO28G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00170.1NO28G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00170.1.cds1NO28G00170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00170.1.cds2NO28G00170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00170.1.cds3NO28G00170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00170.1.cds4NO28G00170.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00170.1.cds5NO28G00170.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00170.1.cds6NO28G00170.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00170.1.cds7NO28G00170.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00170.1.cds8NO28G00170.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00170.1.cds9NO28G00170.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00170.1 ID=NO28G00170.1|Name=NO28G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp
CTCTCTCCCTCCCGCCTTCCCACGTCAAGTACACTCAGGACTAAAACACT
TTTGAAAGCCAAGCGTCGTGGCGGGCCAGTGTCGCGGGCTTAAAGGCCGC
AGAAATCGTCACCATCCCTCCCTAACCCCTTTCTTCCTTACTCCTTCCCT
CCTTCCTGACCGCCCTCCCTCCTTCCCCCCATTAGTAGCCATGAGGACCC
TCGTCCTCGTCGTCCTCCTCCTTCTCCCCCTCGTCGATGCTTGGAGGCCT
ACGGCAGGCTGCAGGAGAGCGGCAAGCAGGGGCATGGCTACAACCTGTAT
GCATGTAGAGGGACAGCAGCAACCGCAGGAGCTGGAGGGAAAGAAAAGCA
GGCGAAGAAGCCCGGTGGCTCCTCTTTCTCGAGGCCAGCAGCTTCAGAAT
ATGTTTGTGGCAGCTATAGGCGCGACGACTGCGCTTACTCTTTTGGAAAT
AGATGCTCGTCCGGCGAATGCTGCCATGGAGCCCCTCGTCCTACCTGAGC
TAGTGACGTATGATGATCCGCAGGGAAAGTTCACCTTGAAGGTGCCCAAA
GGGTGGTTTACAAAGCGAAAGAATCCCAAGGGCCCTGATGGCGAAGGCCT
AATGTTCATCAGCGGTGACTTCAACAAGGCGATCACCATCTCCATCGAAT
CGCTCAGACTCAAGGCGTTGATCCGTAGAGGAGGCACGATGGATGCACCT
GAGGGGTTGGGTCTTACGTCATGGACAGAGTACGGTAGTGCAGACGGGAT
TGCTGGTCTCCTGGCAGCGCACAAGGAGGCAATGGTGGGCGCTCCCACCA
AGCAAGTCTACAGCGTGTTGGATGAGACGATCAAAACAAAGGACGACGCG
TTCACTTTCGACTTCGAGACGGAGGTCCGTGTGGAACGACCCGATCTTCT
CATGGCCGAGATGGGCGTGGACAAGCTCAGGCGCCGCACGACATCTCGCG
CTCTTTTGTCACCCGGGGACAACACAGTCGTCATCTGGGCGGCCGCTCTA
TCGCGTGACTGGGATAGGGGATATAGTCAACTGCTGACCGACGTCGTGAA
CAGCTTAGAGCTCAAGAAGGAGGAGGGAGGGAAGGAGGAAGGGAGGGAGG
AGAAAAAGGCATGAGCGTGTGTGGTGGTCGGATAGACAGTGGTGGAGGAA
GATGGGAAGGGAGGGATGGGGACAAAGCGGATGATGAAAGCAGCAATTAA
AGCACCACGGCAACCGCG
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protein sequence of NO28G00170.1

>NO28G00170.1-protein ID=NO28G00170.1-protein|Name=NO28G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MRTLVLVVLLLLPLVDAWRPTAGCRRAASRGMATTCMHVEGQQQPQELEG
KKSRRRSPVAPLSRGQQLQNMFVAAIGATTALTLLEIDARPANAAMEPLV
LPELVTYDDPQGKFTLKVPKGWFTKRKNPKGPDGEGLMFISGDFNKAITI
SIESLRLKALIRRGGTMDAPEGLGLTSWTEYGSADGIAGLLAAHKEAMVG
APTKQVYSVLDETIKTKDDAFTFDFETEVRVERPDLLMAEMGVDKLRRRT
TSRALLSPGDNTVVIWAAALSRDWDRGYSQLLTDVVNSLELKKEEGGKEE
GREEKKA*
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mRNA from alignment at chr28:69901..72668+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00170.1 ID=NO28G00170.1|Name=NO28G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2768bp|location=Sequence derived from alignment at chr28:69901..72668+ (Nannochloropsis oceanica)
CTCTCTCCCTCCCGCCTTCCCACGTCAAGTACACTCAGGACTAAAACACT
TTTGAAAGCCAAGCGTCGTGGCGGGCCAGTGTCGCGGGCTTAAAGGCCGC
AGAAATCGTCACCATCCCTCCCTAACCCCTTTCTTCCTTACTCCTTCCCT
CCTTCCTGACCGCCCTCCCTCCTTCCCCCCATTAGTAGCCATGAGGACCC
TCGTCCTCGTCGTCCTCCTCCTTCTCCCCCTCGTCGATGCTTGGAGGCCT
ACGGCAGGCTGCAGGAGAGCGGCAAGCAGGGGCATGGCTACAACCTGTAT
GCATGTAGAGGGACAGCAGCAACCGCAGGAGCTGGAGGGAAAGAAAAGCA
GGCGAAGAAGCCCGGTGGCTCCTCTTTCTCGAGGCCAGCAGCTTCAGAAT
ATGTTTGTGGCAGCTATAGGCGCGACGACTGCGCTTACTCTTTTGGAAAT
AGATGCTCGTCCGGCGAATGCTGCCATGGGTAAGAGGGAGGGAGGGGTGG
ATGAATTTGGAGTGCATTGCTTTTAGATCCCCTCGCCCATCCTTCCTTCC
TTGTCTCCTTTCCTCTTTTTCAGAGCCCCTCGTCCTACCTGAGCTAGTGA
CGTATGATGATCCGCAGGGAAAGTTCACCTTGAAGGTGCCCAAAGGGTGG
TTTACAAAGCGGTAAGGAAGGGAGGGAGGGAGGAAGGGAGGGGGGAGAGG
GAGGGAGTGAGGGAAAGAAGCAGTGGAGGGAGGGAGTAAGGGAGAGAGAG
AAAAAGGGAGAGAGGGGGGGGGGGAGAGTGAGGGAATGAGGGAAAGAGTG
AGGGAATGAGGGAAAGAGGGAGGGAATGAGGGAGGGAGGGAGGGAGAGAG
GGAGGGAGGGAGGGAGGGAGGGCGAAGGGTCAAGATCTACCCTGTTCTCA
TCATTTTCCGTCAAATTGATTAATTTCCTTTTCTTTTAACGACAGAAAGA
ATCCCAAGGGCCCTGATGGCGAAGGTAAGCCTCCCTCCCTCCCTCCCTTC
CTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCTTTTCCTTC
CTCACTCTGTCCCCCCTCCCTCTTATGTTTTCTCTCATATCCTATCATGG
ATATGATCAGCGTCGTGTCGTTCCTCCTTCTAGTCTACCATTGGTTCCCG
TCCATGCCCACAACATTTTCCCTCCCTCCCTCCCCTCCCCCCTTCCCTCC
TTTTAGGCCTAATGTTCATCAGCGGTGACTTCAACAAGGCGATCACCATC
TCCATCGAATCGCTCAGACTCAAGGCGTTGATCCGTAGAGGAGGTAGGTG
GGTAGGGAGGGAGGGAGGTAGGTTGGGAGGGGGGGAAAGGAAAACAACAT
TAACCTCACGTTGTTTCACATTGCCCTCCCCCCCTCCCTCCCTCTCTCCC
TTCCTCCCTCCTTCCCTCCTTCCCTCCCTCCCTCCCTAAGGCACGATGGA
TGCACCTGAGGGGTTGGGTCTTACGTCATGGACAGAGTACGGTAGTGCAG
ACGGGATTGCTGGTCTCCTGGCAGCGCACAAGGAGGCAATGGTAGGGAGG
AAGGGAGGGAGGGAGGAAGAAACGGAGGGAAAGAGAGCGTCATGCAAGGG
AGAGGGAGGGAGCGAGGGATGGAGGGGAGGAGGGAGAGAGAAAGGGAAGG
AGGGAGGGAAGGAGGGAGGGAGGGAAGAAGGGAAGAAGATGCGCAACTTA
AAAATTTCTCATTCCCCTATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTAGGTGGGCGCTCCCACCAAGCAAGTCTACAGCGTGTTGGATGAG
ACGATCAAAACAAAGGACGACGCGTTCACTGTACGTCCCCTCCCTCCCTC
CCTCCCTCCCTTCCTCCCTCCCTCGCTTGCTCGCTCTTTTGGAGAGTGTG
ACCCACTCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCCCCT
TCTCTTCTTTTATGGGCTCTATCACTCGCTACCGGATTCCCCGACAACCG
CCCCTCCTTCCCTCCCTCACTCCCTCCTTCCCTTCAGTTCGACTTCGAGA
CGGAGGTCCGTGTGGAACGACCCGATCTTCTCATGGCCGAGGTGAGCAAA
GGCCGGAGGAAGGGAGGGAGAGGGGGTGGGAGAAAGGGAAGAAGGAGGAG
ATTAAAGGTTAGGGGGGGGGGAGGGAAGGAAGGAGGGCAAGAGGACATGA
ACAAAGAATTACCATCAAACGCTGTGCTGCCATAGACCGCCACTCCCTCC
CTTCTTTCCTCCCTCCCTCTCTCCCTCCCGTCCTCAGATGGGCGTGGACA
AGCTCAGGCGCCGCACGACATCTCGCGCTCTTTTGTCACCCGGGGACAAC
ACAGTCGTCATCTGGGCGGGTATGAAGGCAGGGAGGGAGAGAGAAAGGAA
GAGAGGGAGAGGTAGACAGCAACCACCAGGTACGACCTTCTTATATCCCT
CCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTGCCTGCCTAGCCGCTCTA
TCGCGTGACTGGGATAGGGGATATAGTCAACTGCTGACCGACGTCGTGAA
CAGCTTAGAGCTCAAGAAGGAGGAGGGAGGGAAGGAGGAAGGGAGGGAGG
AGAAAAAGGCATGAGCGTGTGTGGTGGTCGGATAGACAGTGGTGGAGGAA
GATGGGAAGGGAGGGATGGGGACAAAGCGGATGATGAAAGCAGCAATTAA
AGCACCACGGCAACCGCG
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Coding sequence (CDS) from alignment at chr28:69901..72668+

>NO28G00170.1 ID=NO28G00170.1|Name=NO28G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr28:69901..72668+ (Nannochloropsis oceanica)
ATGAGGACCCTCGTCCTCGTCGTCCTCCTCCTTCTCCCCCTCGTCGATGC
TTGGAGGCCTACGGCAGGCTGCAGGAGAGCGGCAAGCAGGGGCATGGCTA
CAACCTGTATGCATGTAGAGGGACAGCAGCAACCGCAGGAGCTGGAGGGA
AAGAAAAGCAGGCGAAGAAGCCCGGTGGCTCCTCTTTCTCGAGGCCAGCA
GCTTCAGAATATGTTTGTGGCAGCTATAGGCGCGACGACTGCGCTTACTC
TTTTGGAAATAGATGCTCGTCCGGCGAATGCTGCCATGGAGCCCCTCGTC
CTACCTGAGCTAGTGACGTATGATGATCCGCAGGGAAAGTTCACCTTGAA
GGTGCCCAAAGGGTGGTTTACAAAGCGAAAGAATCCCAAGGGCCCTGATG
GCGAAGGCCTAATGTTCATCAGCGGTGACTTCAACAAGGCGATCACCATC
TCCATCGAATCGCTCAGACTCAAGGCGTTGATCCGTAGAGGAGGCACGAT
GGATGCACCTGAGGGGTTGGGTCTTACGTCATGGACAGAGTACGGTAGTG
CAGACGGGATTGCTGGTCTCCTGGCAGCGCACAAGGAGGCAATGGTGGGC
GCTCCCACCAAGCAAGTCTACAGCGTGTTGGATGAGACGATCAAAACAAA
GGACGACGCGTTCACTTTCGACTTCGAGACGGAGGTCCGTGTGGAACGAC
CCGATCTTCTCATGGCCGAGATGGGCGTGGACAAGCTCAGGCGCCGCACG
ACATCTCGCGCTCTTTTGTCACCCGGGGACAACACAGTCGTCATCTGGGC
GGCCGCTCTATCGCGTGACTGGGATAGGGGATATAGTCAACTGCTGACCG
ACGTCGTGAACAGCTTAGAGCTCAAGAAGGAGGAGGGAGGGAAGGAGGAA
GGGAGGGAGGAGAAAAAGGCATGA
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Synonyms
Publications