NO28G00130, NO28G00130 (gene) Nannochloropsis oceanica

Overview
NameNO28G00130
Unique NameNO28G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length969
Alignment locationchr28:56620..57588 -

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Properties
Property NameValue
DescriptionSmall ubiquitin-related modifier 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:56620..57588 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR022617Rad60/SUMO-like_dom
IPR000626Ubiquitin-like
Homology
BLAST of NO28G00130 vs. NCBI_GenBank
Match: OQR82913.1 (small ubiquitin-like modifier (SUMO) [Achlya hypogyna])

HSP 1 Score: 112.5 bits (280), Expect = 7.500e-22
Identity = 56/95 (58.95%), Postives = 68/95 (71.58%), Query Frame = 0
Query:    1 MSTEEKVKAEGGSGSTEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGGC 96
            MS +E   A  G    + I +RV+DQ+GEE  FKVKP TKMEKI +AYA RKGV V+ALRF++DG RI P  TP  LELE+ DQ+D  LEQ+GGC
Sbjct:    1 MSDQEDKVAADGEDKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVSALRFLLDGTRIAPDQTPKMLELEDQDQIDCALEQVGGC 95          
BLAST of NO28G00130 vs. NCBI_GenBank
Match: EWM29451.1 (small ubiquitin-like modifier [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 6.300e-21
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 0
Query:   16 TEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGGC 96
            +E I LRV+DQTGEE  FKVK TTKMEK+  +YA RKGV+V +LRF++DG+RI    T + LELE++DQ+DVMLEQLGGC
Sbjct:   36 SESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGGC 115          
BLAST of NO28G00130 vs. NCBI_GenBank
Match: XP_008618041.1 (hypothetical protein SDRG_13722 [Saprolegnia diclina VS20] >XP_012205237.1 hypothetical protein SPRG_10888 [Saprolegnia parasitica CBS 223.65] >EQC28393.1 hypothetical protein SDRG_13722 [Saprolegnia diclina VS20] >KDO24101.1 hypothetical protein SPRG_10888 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 107.1 bits (266), Expect = 3.100e-20
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0
Query:    1 MSTEEKVKA-EGGSGSTEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGGC 96
            MS  E  KA   G    + I +RV+DQ+GEE  FKVKP TKMEKI +AYA RKGV V ALRF++DG RI    TP  LELE+ DQ+D  LEQ+GGC
Sbjct:    1 MSDHEDTKAGADGEDKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVTALRFLLDGTRIAADQTPKMLELEDQDQIDCALEQVGGC 96          
BLAST of NO28G00130 vs. NCBI_GenBank
Match: XP_024584581.1 (Ubiquitin-like proteins [Plasmopara halstedii] >CEG48212.1 Ubiquitin-like proteins [Plasmopara halstedii])

HSP 1 Score: 105.1 bits (261), Expect = 1.200e-19
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 0
Query:   16 TEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGG 95
            TE I +RV+DQ+GEE  FKVKP TKMEKI +AYA RKGV V+ALRF++DG RI+   TP  LELE+ DQ+D  LEQ+GG
Sbjct:   30 TEAITIRVKDQSGEETFFKVKPNTKMEKIFSAYAQRKGVPVSALRFLLDGTRISGDQTPKMLELEDQDQIDCALEQVGG 108          
BLAST of NO28G00130 vs. NCBI_GenBank
Match: OEU22446.1 (small ubiquitin-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 105.1 bits (261), Expect = 1.200e-19
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 0
Query:   10 EGGSGS----TEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGG 95
            EGG+G+     E I +RVRDQTGEE  FK+K +TKM K+ N YA RKGV +++LRF++DGERI  T TP  LEL++ DQ+D MLEQ GG
Sbjct:    5 EGGAGAPEAKNEPITIRVRDQTGEETFFKIKKSTKMSKVFNTYAQRKGVQMSSLRFLLDGERIAETMTPQDLELDDQDQIDCMLEQSGG 93          
BLAST of NO28G00130 vs. NCBI_GenBank
Match: OQS03315.1 (small ubiquitin-like modifier (SUMO) [Thraustotheca clavata])

HSP 1 Score: 104.8 bits (260), Expect = 1.600e-19
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 0
Query:    4 EEKVKAEGGSGSTEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGG 95
            E+KV    G    + I +RV+DQ+GEE  FKVKP TKMEKI +AYA RKGV V ALRF++DG RI    TP  LELE+ DQ+D  LEQ+GG
Sbjct:    5 EDKVATGEGEEKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVTALRFLLDGTRIAADQTPKMLELEDQDQIDCALEQVGG 95          
BLAST of NO28G00130 vs. NCBI_GenBank
Match: XP_002180525.1 (small ubiquitin-like modifier [Phaeodactylum tricornutum CCAP 1055/1] >EEC47933.1 small ubiquitin-like modifier [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 104.4 bits (259), Expect = 2.000e-19
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 0
Query:    2 STEEKVKAEGGSGSTEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGG 95
            +T E VK      S E I +RVRDQTGEE  FK+K TTKM+K+   YA RKGV V +LRF++DG+RI P  TP  LELE+ DQ+D +LEQ GG
Sbjct:    5 ATTEDVKE-----SAESITVRVRDQTGEETFFKIKKTTKMQKVFETYATRKGVQVNSLRFLLDGDRITPDQTPKMLELEDQDQIDCVLEQTGG 92          
BLAST of NO28G00130 vs. NCBI_GenBank
Match: EJK47429.1 (hypothetical protein THAOC_33854 [Thalassiosira oceanica])

HSP 1 Score: 104.0 bits (258), Expect = 2.700e-19
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 0
Query:    1 MSTEEKVKAEGGSGSTEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGG 95
            MS  E  K EG     E I +RV+DQTGEE  FKVK TTKM+KI  AYA RKGV  ++LRF++DG+RI    TP  LELE++DQ+D +L Q+GG
Sbjct:    1 MSDAEDAKPEG----NEPITIRVKDQTGEETMFKVKKTTKMQKIFGAYAQRKGVDPSSLRFLLDGDRIQGDQTPKMLELEDEDQIDCVLAQMGG 90          
BLAST of NO28G00130 vs. NCBI_GenBank
Match: GAX28316.1 (small ubiquitin-related modifier [Fistulifera solaris] >GAX13529.1 small ubiquitin-related modifier [Fistulifera solaris])

HSP 1 Score: 103.6 bits (257), Expect = 3.500e-19
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 0
Query:   19 IVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGG 95
            + +R+RDQ GEE  FK+K TTKM+K+   YA RKG+ +A+LRF++DGER+ PT TP  LELE+ DQ+D MLEQ GG
Sbjct:   12 LTIRIRDQQGEETFFKIKKTTKMQKVFETYATRKGLQIASLRFLLDGERVEPTSTPKMLELEDQDQIDCMLEQAGG 87          
BLAST of NO28G00130 vs. NCBI_GenBank
Match: GAY02773.1 (Hypothetical protein PINS_010607 [Pythium insidiosum])

HSP 1 Score: 103.6 bits (257), Expect = 3.500e-19
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 0
Query:   16 TEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGG 95
            +E I +RV+DQ+GEE  FKVKP TKMEKI +AYA RKGV V+ALRF++DG RI+   TP  LELE+ DQ+D  LEQ+GG
Sbjct:   18 SEAITIRVKDQSGEETFFKVKPNTKMEKIFSAYAQRKGVPVSALRFLLDGTRISGDQTPKMLELEDQDQIDCALEQVGG 96          
The following BLAST results are available for this feature:
BLAST of NO28G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR82913.17.500e-2258.95small ubiquitin-like modifier (SUMO) [Achlya hypog... [more]
EWM29451.16.300e-2165.00small ubiquitin-like modifier [Nannochloropsis gad... [more]
XP_008618041.13.100e-2058.33hypothetical protein SDRG_13722 [Saprolegnia dicli... [more]
XP_024584581.11.200e-1964.56Ubiquitin-like proteins [Plasmopara halstedii] >CE... [more]
OEU22446.11.200e-1958.43small ubiquitin-like protein [Fragilariopsis cylin... [more]
OQS03315.11.600e-1958.24small ubiquitin-like modifier (SUMO) [Thraustothec... [more]
XP_002180525.12.000e-1956.99small ubiquitin-like modifier [Phaeodactylum trico... [more]
EJK47429.12.700e-1956.38hypothetical protein THAOC_33854 [Thalassiosira oc... [more]
GAX28316.13.500e-1959.21small ubiquitin-related modifier [Fistulifera sola... [more]
GAY02773.13.500e-1963.29Hypothetical protein PINS_010607 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR088ncniR088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00130.1NO28G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643513gene_10997Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00130.1NO28G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00130 ID=NO28G00130|Name=NO28G00130|organism=Nannochloropsis oceanica|type=gene|length=969bp
ATGTCCACCGAAGAAAAGGTCAAGGCTGAAGGCGGCTCGGGTTCGACCGA
GCACATCGTCCTCCGTGTCCGTGACCAGACGGGCGAGGAAATCCAGTTCA
AGgtccgtggagcgatgggaacgagtggagagagagggctatcatgcgga
aaggggaaaggagttgagggaggaaaggaggggggggcgtgcgttggtgg
ggatagaaaaaggacgaggacggagaacgagaggatgagggcgagagaga
aatatcaatttagcgtaagactctcatactattgtgcttcctcttgacta
tcagtgccgagtccgtccaccctcacatttccctccatccctccctctcc
ccttccctcgctccctccctccctctcacgccctcccctcagGTCAAGCC
CACTACCAAGATGGAAAAAATCCTGAACGCCTATGCGGACCGTAAGGGTG
TCAGTGTCGCCGCCCTCCGCTTCATGGTCGACGGAGAACGgtgcgtcctc
tgccctccttcccttcctccctcctctcctcccctctatcgagatatgct
tgacctcgggtgatggatcaaaagcgaaggagggaggaaaggaaagagag
aattggatgtgaagaatcaatgccaggaaaagaatatctttgtggctggt
atgtagaaaatatgagacttactttccttcctccctcttccctccctccc
tccttccctcccttctttcctccctccctttagCATCAACCCGACGGACA
CGCCCAGCACGCTGGAACTCGAGAACGACGACCAAGTGGACgtacgttaa
aaaagagggagggaaggagggagggatgaaggagagggtgtgtgcttcca
gggctcaagtcggctcccactgccaggacagctttttcattcctcccttc
tctccctccctccctccctccctctcaccctctctccagGTGATGCTTGA
GCAGCTTGGCGGGTGTTAA
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protein sequence of NO28G00130.1

>NO28G00130.1-protein ID=NO28G00130.1-protein|Name=NO28G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MSTEEKVKAEGGSGSTEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYAD
RKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGGC*
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Synonyms
Publications