NO28G00130.1, NO28G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00130.1
Unique NameNO28G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length288
Alignment locationchr28:56620..57588 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:56620..57588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00130.1 vs.
Match: OQR82913.1 (small ubiquitin-like modifier (SUMO) [Achlya hypogyna])

HSP 1 Score: 112.5 bits (280), Expect = 7.500e-22
Identity = 56/95 (58.95%), Postives = 68/95 (71.58%), Query Frame = 0 
Query:    1 MSTEEKVKAEGGSGSTEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYADRKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGGC 96
            MS +E   A  G    + I +RV+DQ+GEE  FKVKP TKMEKI +AYA RKGV V+ALRF++DG RI P  TP  LELE+ DQ+D  LEQ+GGC
Sbjct:    1 MSDQEDKVAADGEDKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVSALRFLLDGTRIAPDQTPKMLELEDQDQIDCALEQVGGC 95
The following BLAST results are available for this feature:
BLAST of NO28G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR82913.17.500e-2258.95small ubiquitin-like modifier (SUMO) [Achlya hypog... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00130NO28G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00130.1NO28G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00130.1.cds1NO28G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00130.1.cds2NO28G00130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00130.1.cds3NO28G00130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00130.1.cds4NO28G00130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00130.1 ID=NO28G00130.1|Name=NO28G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=288bp
ATGTCCACCGAAGAAAAGGTCAAGGCTGAAGGCGGCTCGGGTTCGACCGA
GCACATCGTCCTCCGTGTCCGTGACCAGACGGGCGAGGAAATCCAGTTCA
AGGTCAAGCCCACTACCAAGATGGAAAAAATCCTGAACGCCTATGCGGAC
CGTAAGGGTGTCAGTGTCGCCGCCCTCCGCTTCATGGTCGACGGAGAACG
CATCAACCCGACGGACACGCCCAGCACGCTGGAACTCGAGAACGACGACC
AAGTGGACGTGATGCTTGAGCAGCTTGGCGGGTGTTAA
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protein sequence of NO28G00130.1

>NO28G00130.1-protein ID=NO28G00130.1-protein|Name=NO28G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MSTEEKVKAEGGSGSTEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYAD
RKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVMLEQLGGC*
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mRNA from alignment at chr28:56620..57588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00130.1 ID=NO28G00130.1|Name=NO28G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp|location=Sequence derived from alignment at chr28:56620..57588- (Nannochloropsis oceanica)
ATGTCCACCGAAGAAAAGGTCAAGGCTGAAGGCGGCTCGGGTTCGACCGA
GCACATCGTCCTCCGTGTCCGTGACCAGACGGGCGAGGAAATCCAGTTCA
AGGTCCGTGGAGCGATGGGAACGAGTGGAGAGAGAGGGCTATCATGCGGA
AAGGGGAAAGGAGTTGAGGGAGGAAAGGAGGGGGGGGCGTGCGTTGGTGG
GGATAGAAAAAGGACGAGGACGGAGAACGAGAGGATGAGGGCGAGAGAGA
AATATCAATTTAGCGTAAGACTCTCATACTATTGTGCTTCCTCTTGACTA
TCAGTGCCGAGTCCGTCCACCCTCACATTTCCCTCCATCCCTCCCTCTCC
CCTTCCCTCGCTCCCTCCCTCCCTCTCACGCCCTCCCCTCAGGTCAAGCC
CACTACCAAGATGGAAAAAATCCTGAACGCCTATGCGGACCGTAAGGGTG
TCAGTGTCGCCGCCCTCCGCTTCATGGTCGACGGAGAACGGTGCGTCCTC
TGCCCTCCTTCCCTTCCTCCCTCCTCTCCTCCCCTCTATCGAGATATGCT
TGACCTCGGGTGATGGATCAAAAGCGAAGGAGGGAGGAAAGGAAAGAGAG
AATTGGATGTGAAGAATCAATGCCAGGAAAAGAATATCTTTGTGGCTGGT
ATGTAGAAAATATGAGACTTACTTTCCTTCCTCCCTCTTCCCTCCCTCCC
TCCTTCCCTCCCTTCTTTCCTCCCTCCCTTTAGCATCAACCCGACGGACA
CGCCCAGCACGCTGGAACTCGAGAACGACGACCAAGTGGACGTACGTTAA
AAAAGAGGGAGGGAAGGAGGGAGGGATGAAGGAGAGGGTGTGTGCTTCCA
GGGCTCAAGTCGGCTCCCACTGCCAGGACAGCTTTTTCATTCCTCCCTTC
TCTCCCTCCCTCCCTCCCTCCCTCTCACCCTCTCTCCAGGTGATGCTTGA
GCAGCTTGGCGGGTGTTAA
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Coding sequence (CDS) from alignment at chr28:56620..57588-

>NO28G00130.1 ID=NO28G00130.1|Name=NO28G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at chr28:56620..57588- (Nannochloropsis oceanica)
ATGTCCACCGAAGAAAAGGTCAAGGCTGAAGGCGGCTCGGGTTCGACCGA
GCACATCGTCCTCCGTGTCCGTGACCAGACGGGCGAGGAAATCCAGTTCA
AGGTCAAGCCCACTACCAAGATGGAAAAAATCCTGAACGCCTATGCGGAC
CGTAAGGGTGTCAGTGTCGCCGCCCTCCGCTTCATGGTCGACGGAGAACG
CATCAACCCGACGGACACGCCCAGCACGCTGGAACTCGAGAACGACGACC
AAGTGGACGTGATGCTTGAGCAGCTTGGCGGGTGTTAA
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Synonyms
Publications