NO28G00090, NO28G00090 (gene) Nannochloropsis oceanica

Overview
NameNO28G00090
Unique NameNO28G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2816
Alignment locationchr28:42231..45046 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:42231..45046 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR088ncniR088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR143ngnoR143Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00090.1NO28G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674982gene_10993Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00090.1NO28G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00090 ID=NO28G00090|Name=NO28G00090|organism=Nannochloropsis oceanica|type=gene|length=2816bp
TGCTGCTGCGGCGGATAATGCCTGCTTGGTCGTGGTGGTGGTGTATGTAT
GTCTTGCAAGTGAGAGGCGGGAGGTTATCGATTCCTCTTCTGTGAGTTGG
TCAAGGAATCATATACAGAGCCGTACAAGCCCCGAGATCGTCCACGTGTG
TAAAAGAATGCGTGAATTTTCCATAGGAACAAGATGCTCTGTATTGTGCA
GTATCAACCTGCTTCGGTACGCGCCTTTAGAAGCTCTCCAAGAGGGTGCA
TTCATCCCCTTTAAATTCAAGTCAAGTTCGTCTCCGTCATCCTCAACGAT
AGTAAAGCCACCCTTGAAACTGAACAGGCCTTCCTTATAATCCCCCTTTA
TCTCTCCCTCCATCCCCACCGAACGCATATCCCCATCTCCTCGGTTCCAA
ACCAAAATCTTGCCAAGAGATCTCATCAACCTCCCCATCCACCCACCACG
ACAGGCAAAGCCATGCACCGTCTCTCGACGGGTGCCTGTGCGACAGCCAA
CAGCACCACCAGTACCAACTGTATTGCAGCCCAGCATTTTTTGTCGTCTC
TGCGTCTTCTCTGTCTGTCTAGATCCCGAAGGTGGTCCCTTTCACTCTTT
CCTTCACCCTCGCACGGGTGTGCTCTTACTACTTCAGCCTCTGCCTCCTC
CTCGTTCTCCTCTTCCTCCTCGCCAAGATCACCACGCTTTGAAAAAAAAA
AGACAGCCACAGCGACATCGGACAAGCCCTCTCCAAGCAAACACCAGCAA
TATCATGATGCCAAGCGAGCAGAACGCCTGCGATTACGGAGGGAAAAGGA
GAAGCTTTTGGGGACGAAAGGGGAGGGGGAGGAGGGCAAGAAATGGAACC
GGATTGTCGGGAATAGAGGGGGAGGGACGATGGAGAGTAATAATCGGAGG
CCAATGACGCCTTATAGAGGAAAGGATGGAGTGTTGGGAAGAAGTAGAGG
AGGAGGAGGAGGAGGAGGAGGAAAAGGAGGAGGGGGGTGGGAGGGGGAAG
GGCGAGTTGATAGGGCAACGCGACCTTCCATACCCTCAGGTACACGCACG
ATTCGCAGTGGCGACAGGCGCATGCTCTTGCCTCAACAAGAGGTAACCTA
CACGAAGGAAGGCACCAAAGTGCGATGGGTAATCGACATTAAGgtaggct
tcctcttaccctccttccttccctcgctcattccctccttccctgctttc
atctctcctttctcttcatcctcgtccccccttcctccctccttctctcc
cagGACCTCAAACGCCAAAGCAAGCAATCCACCTCCACCCTCCTCCGCAA
CCAAAAACGTGCCTTGGAAAACACGGCCCTCCTCTCCCTACCCGCCACTA
GCATCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCACCTAC
CGCCCCCTCCTCCCACGGGGCCTCACCGAAGCCGGCCTTCTCCCCAGCAA
GTACCGTGGCGCAGACCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCGTTCCCTCCTTCGGTCCCGCCCTGGCAAAGTGACCGAACTTCTTTCG
CTCTTGCGCTCCAGCAAGCTTGGGAAGAAGGGAGGGGGGGAGGGAAGGAA
GGAGGCAGGATGGCGGGCAGTAGAGCAATTGAGGTGGATTCGGACTCCGT
TGTCGGAGAAGGAAGTGGGGATGGTGCTAGAAGGGTGTTTGTCGTCCTAC
GGGTGGAAGGCGGGATTGAAGTACTGTTTGAGGAAGGGGGAGGAGCAGCA
GGGGGCGAAGGGAGGGGGTGAGAGTGTGAAGAGGAAACATTTTCATCGCG
TCATCGAGACGGCCTGCCGGTGGAGGGAAGAGGGGGAAGGGGAGGGGGAG
GGAGGAAAGGCGAGGAGGGCGTGGAAGgtgcgtgggagggagggaaggag
ggagggagggagggaaggaggaaggaatagaggatgcttgtgtgcattgt
gtggagtagattgatagatgctttcttttccctccttccctccctccctc
ccaaccaatcaaacgaccctcctccttcctccccctccctcccccctccc
tctcccagGTCCTCCACGAAATGGAAGGTCTAGGCATCCAGCCCACGCTT
CGTACCCTCGCCCTCTTCCTGGCCCAGGCGGCCATTGAAGGCGACGTCGG
CGTCACTGATAAGGTCCTCCTTCTGGCCCGGGCTCGAGGCCTGGAGCTCG
ACAAACGgtacgcactcccctccctccctccctccctccctccctccctc
tggttggcttcactttaaagcttctttcgtttccaatttaatcgccggat
ttcatttattctcgtaactcaatgctttccttccctccctccctccctcc
ctccctccctccctccttcccaagGTGCCTGCGCCTAGTCGCCACCGCAT
ACCTGAAGGGCGGACGGCAAGACAAGGCAGCGTTCGTGCTGAGgtaggta
gggagggagggagggagagcaggaggatttgtggccagagggagcgaggg
agggctgagatcgactaatcattttttttcttctgtttttgaccctcaca
ctgacagGGAGCTCGGTGAGGAGGAAGAGGGAGGGAGGGAGGGAGAGAAA
GCAGAGGAGGAGGAGGAAGACGACGACGACGACGACGACGAAGAAGAAGA
AGAGGAGCCGGACGGGAGACGTAGAGAAGAGGTGAAGGGGAAGTGGAAGG
GAGGAGGAGGGGGAGGAGGAGGAGGAGGGGGGGGGGGAGGAGGAGGAGGA
GGGAGAGGAGGGAGAGGAGGAGGGGGAGGAGATAGAGGAGGAAATGGAGG
GAGAGGCGATAGATGA
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protein sequence of NO28G00090.1

>NO28G00090.1-protein ID=NO28G00090.1-protein|Name=NO28G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MHRLSTGACATANSTTSTNCIAAQHFLSSLRLLCLSRSRRWSLSLFPSPS
HGCALTTSASASSSFSSSSSPRSPRFEKKKTATATSDKPSPSKHQQYHDA
KRAERLRLRREKEKLLGTKGEGEEGKKWNRIVGNRGGGTMESNNRRPMTP
YRGKDGVLGRSRGGGGGGGGKGGGGWEGEGRVDRATRPSIPSGTRTIRSG
DRRMLLPQQEVTYTKEGTKVRWVIDIKDLKRQSKQSTSTLLRNQKRALEN
TALLSLPATSIALPPSLPPSLPPSTYRPLLPRGLTEAGLLPSKYRGADLA
LPPSLPPSLPRSLLRSRPGKVTELLSLLRSSKLGKKGGGEGRKEAGWRAV
EQLRWIRTPLSEKEVGMVLEGCLSSYGWKAGLKYCLRKGEEQQGAKGGGE
SVKRKHFHRVIETACRWREEGEGEGEGGKARRAWKVLHEMEGLGIQPTLR
TLALFLAQAAIEGDVGVTDKVLLLARARGLELDKRCLRLVATAYLKGGRQ
DKAAFVLRELGEEEEGGREGEKAEEEEEDDDDDDDEEEEEEPDGRRREEV
KGKWKGGGGGGGGGGGGGGGGGGRGGRGGGGGDRGGNGGRGDR*
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Synonyms
Publications