NO28G00090.1, NO28G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00090.1
Unique NameNO28G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2244
Alignment locationchr28:42231..45046 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:42231..45046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00090NO28G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00090.1NO28G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00090.1.cds1NO28G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00090.1.cds2NO28G00090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00090.1.cds3NO28G00090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00090.1.cds4NO28G00090.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00090.1.cds5NO28G00090.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00090.1 ID=NO28G00090.1|Name=NO28G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2244bp
TGCTGCTGCGGCGGATAATGCCTGCTTGGTCGTGGTGGTGGTGTATGTAT
GTCTTGCAAGTGAGAGGCGGGAGGTTATCGATTCCTCTTCTGTGAGTTGG
TCAAGGAATCATATACAGAGCCGTACAAGCCCCGAGATCGTCCACGTGTG
TAAAAGAATGCGTGAATTTTCCATAGGAACAAGATGCTCTGTATTGTGCA
GTATCAACCTGCTTCGGTACGCGCCTTTAGAAGCTCTCCAAGAGGGTGCA
TTCATCCCCTTTAAATTCAAGTCAAGTTCGTCTCCGTCATCCTCAACGAT
AGTAAAGCCACCCTTGAAACTGAACAGGCCTTCCTTATAATCCCCCTTTA
TCTCTCCCTCCATCCCCACCGAACGCATATCCCCATCTCCTCGGTTCCAA
ACCAAAATCTTGCCAAGAGATCTCATCAACCTCCCCATCCACCCACCACG
ACAGGCAAAGCCATGCACCGTCTCTCGACGGGTGCCTGTGCGACAGCCAA
CAGCACCACCAGTACCAACTGTATTGCAGCCCAGCATTTTTTGTCGTCTC
TGCGTCTTCTCTGTCTGTCTAGATCCCGAAGGTGGTCCCTTTCACTCTTT
CCTTCACCCTCGCACGGGTGTGCTCTTACTACTTCAGCCTCTGCCTCCTC
CTCGTTCTCCTCTTCCTCCTCGCCAAGATCACCACGCTTTGAAAAAAAAA
AGACAGCCACAGCGACATCGGACAAGCCCTCTCCAAGCAAACACCAGCAA
TATCATGATGCCAAGCGAGCAGAACGCCTGCGATTACGGAGGGAAAAGGA
GAAGCTTTTGGGGACGAAAGGGGAGGGGGAGGAGGGCAAGAAATGGAACC
GGATTGTCGGGAATAGAGGGGGAGGGACGATGGAGAGTAATAATCGGAGG
CCAATGACGCCTTATAGAGGAAAGGATGGAGTGTTGGGAAGAAGTAGAGG
AGGAGGAGGAGGAGGAGGAGGAAAAGGAGGAGGGGGGTGGGAGGGGGAAG
GGCGAGTTGATAGGGCAACGCGACCTTCCATACCCTCAGGTACACGCACG
ATTCGCAGTGGCGACAGGCGCATGCTCTTGCCTCAACAAGAGGTAACCTA
CACGAAGGAAGGCACCAAAGTGCGATGGGTAATCGACATTAAGGACCTCA
AACGCCAAAGCAAGCAATCCACCTCCACCCTCCTCCGCAACCAAAAACGT
GCCTTGGAAAACACGGCCCTCCTCTCCCTACCCGCCACTAGCATCGCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCACCTACCGCCCCCTCC
TCCCACGGGGCCTCACCGAAGCCGGCCTTCTCCCCAGCAAGTACCGTGGC
GCAGACCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGTTCCCT
CCTTCGGTCCCGCCCTGGCAAAGTGACCGAACTTCTTTCGCTCTTGCGCT
CCAGCAAGCTTGGGAAGAAGGGAGGGGGGGAGGGAAGGAAGGAGGCAGGA
TGGCGGGCAGTAGAGCAATTGAGGTGGATTCGGACTCCGTTGTCGGAGAA
GGAAGTGGGGATGGTGCTAGAAGGGTGTTTGTCGTCCTACGGGTGGAAGG
CGGGATTGAAGTACTGTTTGAGGAAGGGGGAGGAGCAGCAGGGGGCGAAG
GGAGGGGGTGAGAGTGTGAAGAGGAAACATTTTCATCGCGTCATCGAGAC
GGCCTGCCGGTGGAGGGAAGAGGGGGAAGGGGAGGGGGAGGGAGGAAAGG
CGAGGAGGGCGTGGAAGGTCCTCCACGAAATGGAAGGTCTAGGCATCCAG
CCCACGCTTCGTACCCTCGCCCTCTTCCTGGCCCAGGCGGCCATTGAAGG
CGACGTCGGCGTCACTGATAAGGTCCTCCTTCTGGCCCGGGCTCGAGGCC
TGGAGCTCGACAAACGGTGCCTGCGCCTAGTCGCCACCGCATACCTGAAG
GGCGGACGGCAAGACAAGGCAGCGTTCGTGCTGAGGGAGCTCGGTGAGGA
GGAAGAGGGAGGGAGGGAGGGAGAGAAAGCAGAGGAGGAGGAGGAAGACG
ACGACGACGACGACGACGAAGAAGAAGAAGAGGAGCCGGACGGGAGACGT
AGAGAAGAGGTGAAGGGGAAGTGGAAGGGAGGAGGAGGGGGAGGAGGAGG
AGGAGGGGGGGGGGGAGGAGGAGGAGGAGGGAGAGGAGGGAGAGGAGGAG
GGGGAGGAGATAGAGGAGGAAATGGAGGGAGAGGCGATAGATGA
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protein sequence of NO28G00090.1

>NO28G00090.1-protein ID=NO28G00090.1-protein|Name=NO28G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MHRLSTGACATANSTTSTNCIAAQHFLSSLRLLCLSRSRRWSLSLFPSPS
HGCALTTSASASSSFSSSSSPRSPRFEKKKTATATSDKPSPSKHQQYHDA
KRAERLRLRREKEKLLGTKGEGEEGKKWNRIVGNRGGGTMESNNRRPMTP
YRGKDGVLGRSRGGGGGGGGKGGGGWEGEGRVDRATRPSIPSGTRTIRSG
DRRMLLPQQEVTYTKEGTKVRWVIDIKDLKRQSKQSTSTLLRNQKRALEN
TALLSLPATSIALPPSLPPSLPPSTYRPLLPRGLTEAGLLPSKYRGADLA
LPPSLPPSLPRSLLRSRPGKVTELLSLLRSSKLGKKGGGEGRKEAGWRAV
EQLRWIRTPLSEKEVGMVLEGCLSSYGWKAGLKYCLRKGEEQQGAKGGGE
SVKRKHFHRVIETACRWREEGEGEGEGGKARRAWKVLHEMEGLGIQPTLR
TLALFLAQAAIEGDVGVTDKVLLLARARGLELDKRCLRLVATAYLKGGRQ
DKAAFVLRELGEEEEGGREGEKAEEEEEDDDDDDDEEEEEEPDGRRREEV
KGKWKGGGGGGGGGGGGGGGGGGRGGRGGGGGDRGGNGGRGDR*
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mRNA from alignment at chr28:42231..45046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00090.1 ID=NO28G00090.1|Name=NO28G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2816bp|location=Sequence derived from alignment at chr28:42231..45046- (Nannochloropsis oceanica)
TGCTGCTGCGGCGGATAATGCCTGCTTGGTCGTGGTGGTGGTGTATGTAT
GTCTTGCAAGTGAGAGGCGGGAGGTTATCGATTCCTCTTCTGTGAGTTGG
TCAAGGAATCATATACAGAGCCGTACAAGCCCCGAGATCGTCCACGTGTG
TAAAAGAATGCGTGAATTTTCCATAGGAACAAGATGCTCTGTATTGTGCA
GTATCAACCTGCTTCGGTACGCGCCTTTAGAAGCTCTCCAAGAGGGTGCA
TTCATCCCCTTTAAATTCAAGTCAAGTTCGTCTCCGTCATCCTCAACGAT
AGTAAAGCCACCCTTGAAACTGAACAGGCCTTCCTTATAATCCCCCTTTA
TCTCTCCCTCCATCCCCACCGAACGCATATCCCCATCTCCTCGGTTCCAA
ACCAAAATCTTGCCAAGAGATCTCATCAACCTCCCCATCCACCCACCACG
ACAGGCAAAGCCATGCACCGTCTCTCGACGGGTGCCTGTGCGACAGCCAA
CAGCACCACCAGTACCAACTGTATTGCAGCCCAGCATTTTTTGTCGTCTC
TGCGTCTTCTCTGTCTGTCTAGATCCCGAAGGTGGTCCCTTTCACTCTTT
CCTTCACCCTCGCACGGGTGTGCTCTTACTACTTCAGCCTCTGCCTCCTC
CTCGTTCTCCTCTTCCTCCTCGCCAAGATCACCACGCTTTGAAAAAAAAA
AGACAGCCACAGCGACATCGGACAAGCCCTCTCCAAGCAAACACCAGCAA
TATCATGATGCCAAGCGAGCAGAACGCCTGCGATTACGGAGGGAAAAGGA
GAAGCTTTTGGGGACGAAAGGGGAGGGGGAGGAGGGCAAGAAATGGAACC
GGATTGTCGGGAATAGAGGGGGAGGGACGATGGAGAGTAATAATCGGAGG
CCAATGACGCCTTATAGAGGAAAGGATGGAGTGTTGGGAAGAAGTAGAGG
AGGAGGAGGAGGAGGAGGAGGAAAAGGAGGAGGGGGGTGGGAGGGGGAAG
GGCGAGTTGATAGGGCAACGCGACCTTCCATACCCTCAGGTACACGCACG
ATTCGCAGTGGCGACAGGCGCATGCTCTTGCCTCAACAAGAGGTAACCTA
CACGAAGGAAGGCACCAAAGTGCGATGGGTAATCGACATTAAGGTAGGCT
TCCTCTTACCCTCCTTCCTTCCCTCGCTCATTCCCTCCTTCCCTGCTTTC
ATCTCTCCTTTCTCTTCATCCTCGTCCCCCCTTCCTCCCTCCTTCTCTCC
CAGGACCTCAAACGCCAAAGCAAGCAATCCACCTCCACCCTCCTCCGCAA
CCAAAAACGTGCCTTGGAAAACACGGCCCTCCTCTCCCTACCCGCCACTA
GCATCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCACCTAC
CGCCCCCTCCTCCCACGGGGCCTCACCGAAGCCGGCCTTCTCCCCAGCAA
GTACCGTGGCGCAGACCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCGTTCCCTCCTTCGGTCCCGCCCTGGCAAAGTGACCGAACTTCTTTCG
CTCTTGCGCTCCAGCAAGCTTGGGAAGAAGGGAGGGGGGGAGGGAAGGAA
GGAGGCAGGATGGCGGGCAGTAGAGCAATTGAGGTGGATTCGGACTCCGT
TGTCGGAGAAGGAAGTGGGGATGGTGCTAGAAGGGTGTTTGTCGTCCTAC
GGGTGGAAGGCGGGATTGAAGTACTGTTTGAGGAAGGGGGAGGAGCAGCA
GGGGGCGAAGGGAGGGGGTGAGAGTGTGAAGAGGAAACATTTTCATCGCG
TCATCGAGACGGCCTGCCGGTGGAGGGAAGAGGGGGAAGGGGAGGGGGAG
GGAGGAAAGGCGAGGAGGGCGTGGAAGGTGCGTGGGAGGGAGGGAAGGAG
GGAGGGAGGGAGGGAAGGAGGAAGGAATAGAGGATGCTTGTGTGCATTGT
GTGGAGTAGATTGATAGATGCTTTCTTTTCCCTCCTTCCCTCCCTCCCTC
CCAACCAATCAAACGACCCTCCTCCTTCCTCCCCCTCCCTCCCCCCTCCC
TCTCCCAGGTCCTCCACGAAATGGAAGGTCTAGGCATCCAGCCCACGCTT
CGTACCCTCGCCCTCTTCCTGGCCCAGGCGGCCATTGAAGGCGACGTCGG
CGTCACTGATAAGGTCCTCCTTCTGGCCCGGGCTCGAGGCCTGGAGCTCG
ACAAACGGTACGCACTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TGGTTGGCTTCACTTTAAAGCTTCTTTCGTTTCCAATTTAATCGCCGGAT
TTCATTTATTCTCGTAACTCAATGCTTTCCTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTTCCCAAGGTGCCTGCGCCTAGTCGCCACCGCAT
ACCTGAAGGGCGGACGGCAAGACAAGGCAGCGTTCGTGCTGAGGTAGGTA
GGGAGGGAGGGAGGGAGAGCAGGAGGATTTGTGGCCAGAGGGAGCGAGGG
AGGGCTGAGATCGACTAATCATTTTTTTTCTTCTGTTTTTGACCCTCACA
CTGACAGGGAGCTCGGTGAGGAGGAAGAGGGAGGGAGGGAGGGAGAGAAA
GCAGAGGAGGAGGAGGAAGACGACGACGACGACGACGACGAAGAAGAAGA
AGAGGAGCCGGACGGGAGACGTAGAGAAGAGGTGAAGGGGAAGTGGAAGG
GAGGAGGAGGGGGAGGAGGAGGAGGAGGGGGGGGGGGAGGAGGAGGAGGA
GGGAGAGGAGGGAGAGGAGGAGGGGGAGGAGATAGAGGAGGAAATGGAGG
GAGAGGCGATAGATGA
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Coding sequence (CDS) from alignment at chr28:42231..45046-

>NO28G00090.1 ID=NO28G00090.1|Name=NO28G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at chr28:42231..45046- (Nannochloropsis oceanica)
ATGCACCGTCTCTCGACGGGTGCCTGTGCGACAGCCAACAGCACCACCAG
TACCAACTGTATTGCAGCCCAGCATTTTTTGTCGTCTCTGCGTCTTCTCT
GTCTGTCTAGATCCCGAAGGTGGTCCCTTTCACTCTTTCCTTCACCCTCG
CACGGGTGTGCTCTTACTACTTCAGCCTCTGCCTCCTCCTCGTTCTCCTC
TTCCTCCTCGCCAAGATCACCACGCTTTGAAAAAAAAAAGACAGCCACAG
CGACATCGGACAAGCCCTCTCCAAGCAAACACCAGCAATATCATGATGCC
AAGCGAGCAGAACGCCTGCGATTACGGAGGGAAAAGGAGAAGCTTTTGGG
GACGAAAGGGGAGGGGGAGGAGGGCAAGAAATGGAACCGGATTGTCGGGA
ATAGAGGGGGAGGGACGATGGAGAGTAATAATCGGAGGCCAATGACGCCT
TATAGAGGAAAGGATGGAGTGTTGGGAAGAAGTAGAGGAGGAGGAGGAGG
AGGAGGAGGAAAAGGAGGAGGGGGGTGGGAGGGGGAAGGGCGAGTTGATA
GGGCAACGCGACCTTCCATACCCTCAGGTACACGCACGATTCGCAGTGGC
GACAGGCGCATGCTCTTGCCTCAACAAGAGGTAACCTACACGAAGGAAGG
CACCAAAGTGCGATGGGTAATCGACATTAAGGACCTCAAACGCCAAAGCA
AGCAATCCACCTCCACCCTCCTCCGCAACCAAAAACGTGCCTTGGAAAAC
ACGGCCCTCCTCTCCCTACCCGCCACTAGCATCGCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCACCTACCGCCCCCTCCTCCCACGGGGCC
TCACCGAAGCCGGCCTTCTCCCCAGCAAGTACCGTGGCGCAGACCTCGCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGTTCCCTCCTTCGGTCCCG
CCCTGGCAAAGTGACCGAACTTCTTTCGCTCTTGCGCTCCAGCAAGCTTG
GGAAGAAGGGAGGGGGGGAGGGAAGGAAGGAGGCAGGATGGCGGGCAGTA
GAGCAATTGAGGTGGATTCGGACTCCGTTGTCGGAGAAGGAAGTGGGGAT
GGTGCTAGAAGGGTGTTTGTCGTCCTACGGGTGGAAGGCGGGATTGAAGT
ACTGTTTGAGGAAGGGGGAGGAGCAGCAGGGGGCGAAGGGAGGGGGTGAG
AGTGTGAAGAGGAAACATTTTCATCGCGTCATCGAGACGGCCTGCCGGTG
GAGGGAAGAGGGGGAAGGGGAGGGGGAGGGAGGAAAGGCGAGGAGGGCGT
GGAAGGTCCTCCACGAAATGGAAGGTCTAGGCATCCAGCCCACGCTTCGT
ACCCTCGCCCTCTTCCTGGCCCAGGCGGCCATTGAAGGCGACGTCGGCGT
CACTGATAAGGTCCTCCTTCTGGCCCGGGCTCGAGGCCTGGAGCTCGACA
AACGGTGCCTGCGCCTAGTCGCCACCGCATACCTGAAGGGCGGACGGCAA
GACAAGGCAGCGTTCGTGCTGAGGGAGCTCGGTGAGGAGGAAGAGGGAGG
GAGGGAGGGAGAGAAAGCAGAGGAGGAGGAGGAAGACGACGACGACGACG
ACGACGAAGAAGAAGAAGAGGAGCCGGACGGGAGACGTAGAGAAGAGGTG
AAGGGGAAGTGGAAGGGAGGAGGAGGGGGAGGAGGAGGAGGAGGGGGGGG
GGGAGGAGGAGGAGGAGGGAGAGGAGGGAGAGGAGGAGGGGGAGGAGATA
GAGGAGGAAATGGAGGGAGAGGCGATAGATGA
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Synonyms
Publications