NO27G01840, NO27G01840 (gene) Nannochloropsis oceanica

Overview
NameNO27G01840
Unique NameNO27G01840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3904
Alignment locationchr27:618932..622835 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:618932..622835 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006357regulation of transcription by RNA polymerase II
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO27G01840 vs. NCBI_GenBank
Match: XP_005854767.1 (hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526] >XP_005855415.1 hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >EKU20946.1 hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >EKU21594.1 hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 74.7 bits (182), Expect = 1.500e-9
Identity = 64/233 (27.47%), Postives = 109/233 (46.78%), Query Frame = 0 
Query:   84 ETPFADLVFSRNDPLSQVPYALTAFHRLHAEGRISRERVVTRLRMWQAWSLAVGRDVTYSLSSAIAKALSITPIELESPSTLLTSPPCSALRAETIGKFHRIAVA---SQALRGTPFFISANDESRACIFSISDPESDYIVQTANDICQKW---LIDPQSDLEAQILGRHAIQLLVHPALVCREDRVTYAESM--LILGMTEMTPSKQSFLLKGCPRDGEAKLFLITNHQVLL 309
            E P  + V + + P       L AF RL   G+I R+  +  L+MW+  S   G DVT  ++S + K  +++ IELE P  +L  PP S +R + + ++   A +   +Q L+ T  F   N+ +RA   S+    ++     A   C ++    +   ++L  + L R  I   +   L   EDR TY +++  +I G  ++T   ++   K   +DG  KL L T   + L
Sbjct:   88 EEPILEYVLTTHSPKPFAEMYLQAFERLFIAGKIRRDSALRTLKMWEFLSSLAGADVTLGVASHVQKRFNVSAIELEEPMRMLQDPP-SHVRYQRLQQYQSSAASQARTQQLKETEIFKRENEGTRASRASLLMFVTNRSTMWA--ACNEFHAARLKEATELWDKALQRKLIWSYLMAPLYAPEDRRTYIDNIVEMIFGHEKLT---KTMFFKMYDKDGSVKLCLHTARTIRL 314
The following BLAST results are available for this feature:
BLAST of NO27G01840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854767.11.500e-927.47hypothetical protein NGA_0115602 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01840.1NO27G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01840.2NO27G01840.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01840.3NO27G01840.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01840.4NO27G01840.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01840.1NO27G01840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01840.2NO27G01840.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01840.3NO27G01840.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01840.4NO27G01840.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01840 ID=NO27G01840|Name=NO27G01840|organism=Nannochloropsis oceanica|type=gene|length=3904bp
TTTCCTTTACTTCCTCCACCTCAGgttggtagttggccaggtggccggcc
ctctatcggccacgggcagtcttgctgttgcctttctcagtcgaaaaagg
caacattcgtgccttgcatacccttacttgactttattaattgacccttc
cttcccgcatctcgtacacaaatcgttgcactgccagTGGATTATGAATC
AAGAGACGGGCAAACGGAATCAAAAGCCCTGCCTCCACTGCAGGTAAGCA
CAATGTGGTGTTCCTCGTCCGTAAGCCCCTGTCCTTTTTCTGATCTGTTG
GAAGGCCCCGGGTGACGTGGGTGCGCTGATGGTGACTTGGTGATTTTGCT
TGACCAAGTCAAGGGATGCGGATGGAGGGCTTCTTGTATAGTACTCACTT
TACAACTTTTACCGCATTTACACTCGCACATGCACTCGACAGCCGAGACA
AGGTGAAATGTGACGGTAATTTCCCCTGGTAAGTGTGTGCCGTTTGTCTG
GTGAATGAGCTTCCTCCCATCAATGTCAGCCAGAACAATGGGCGGGGCTA
TCCGGTCGAAGTACGGTTATCCTTTCTTCCATGTAATCGCAAGAAGCCAT
TTCTCGTACTTGCTTGAGGCTGTCGCTGTTTGAGTAATAAGCAAGTCCTC
TCGGTCCAGGCATGGGTGGTATTCGATATGGGATGTGTCGTTGATGGGGA
GGAGTGAATGAGGAAGACGGAGGGAGGGAGAGAGGGAGTGGGAAAAGGGA
GGGGATACGAACAAGGAAGGGAAGGACGGCTGCACGACTGGTTGATGAGT
GCCAGAAAGCTAGAAAAAGGAAGAGTAAGTTGATTGAGTGCTGAAGGTGA
TGGTACATTGTGAAAATAATCGTCAAATCCACACCCACCCACACAGCGAC
CGCTGCTTTGAACGCTCTTACCGCTGCAGCAAAAATACTTCTCTTCCTCT
TCCTCGTTCTCATCTTCCTGATTATCCTCTGGCAAGCACTCGTTCTCGTT
ACCGTCGCCGCAGCCTCGCCAGTGGCGAAAGTGAAAGTCAAGCTGTCGCA
CCGGAGGAAGGGGAGAAAGGGAGGGAGGAGGGGGAAGCCAACGAGGTCGA
GACTCCCTTTGCGGATCTAGTATTTTCGCGGAATGACCCCTTGAGTCAAG
TCCCATACGCTCTGACGGCCTTTCATCGTCTCCATGCCGAAGGACGTATA
AGTCGAGAGCGCGTTGTGACTCGCCTACGCATGTGGCAGGCCTGgtacgt
ctgtttatgtttggtttcttctctccctgtctttcctccatgcacagcca
ttaaataatcgttacttacactatgtgatgaatcgctgcttgacacctta
tttgggttcatgccagGTCCCTCGCTGTCGGGCGCGACGTCACCTACTCA
CTTTCTTCCGCCATAGCCAAAGCTCTCTCCATCACCCCTATCGAGCTCGA
AAGCCCGTCCACCCTCCTCACCTCCCCCCCGTGCTCTGCCCTCCGAGCCG
AGACCATCGGCAAGTTCCACCGGATCGCCGTAGCCAGCCAGgtccgtcga
cgtgatgtcatgttggtgatgatgatcgtcctgcatcgttcccctcctcc
ctttcttgcgatctatgtttcatcgcttctctcccggctccaagaatcat
caagtccacgctaatttaaatttctcatttcccccctccctcctcccatc
cccctcccccctctctatccatcctccagGCTCTCCGGGGCACGCCGTTC
TTCATTTCAGCCAACGACGAGAGCCGGGCATGTATATTTTCAATAAGCGA
CCCGGAGAGCGACTATATCGTCCAGACGGCCAACGATATCTGCCAAAAAT
GGCTCATCGACCCTCAGTCCGACTTGGAGGCCCAGATCCTTGGAAGGCAC
GCCATTCAGCTGCTCGTTCACCCTGCTTTGGTGTGCCGGGAGGACCGTGT
GACATACGCCGAATCGATGTTAATCCTCGGCATGACAGAAATGACCCCCT
CGAAGCAGTCCTTTCTCTTGAAGGGTTGTCCGAGGGATGGAGAGGCGAAG
CTCTTCCTCATCACCAACCATCAGGTGCTCTTGCCGGTGCCTGTACCTTC
ATCGGCGGGGAAGGGGGGAGGTCTGTCTGAAGAGGGCAAAGCGAGAGGGG
CGATGGGGGGGGCACGGTATGTATATGCGGCCCTCCAATACATCGATATT
TGTCCTCCCTCTCGCCATATTACCGACCAGCCGGGAAAAAGATACATGAA
ATGCGCCCGCAATTTCCGGAGGGACAATAATCTGTCACGATGGCCGCTGC
CCTCCCCCTCCTCCCTCCCGCCCTCTTCCCCTTTCTCTCTCTCCACCTCC
CTTCCACCCCCTTTGCCGTTTCCCGCGCACTTGTCCTCGTTATCGCCCAC
CATCTCATCTATTTCTTCGTCCTCCGCCACGACCGACTGTTGTTACAGTG
GACCATGCTCTCTCTTCGTGCCACCAGCGCGAGAAAAGCGAGCGAAGATG
ACCCGAAGCGAAGGAGAAGGAGGAGATGGAGAAGGAAGAGGAGAAGGAGG
AAAAAGAGGAAACGATACAGCAGCAGCAGCAGCAGCAGCAGCAGCACAAG
GAGTACGAGAAACAACAAAAACAGCAGGAGGAGCAGCAGCAGCATGTTTG
GAAGTGGATATGCAGGTCTCTACCGGTATTGGGGCCATACTTGACTTCGT
CGATAATAACGGTAGTGCAGCCGTTGTCCAAGCAGCAGCAGCAGTAGCAG
CATCGACAACGACAGCCTCAGTTGGTGGAGGGATAACAGCACCCCGAGGG
CATACAGACACCGACTCGTGTTTGCACAACCCGAGACAGAATAGCGGTGA
GAATGTGCTCAAAGAGGACTGCAAAGACGATAACCATCAACACCACCACC
ACCAGCAGCGGCAGCAGCAGCAGCAGCAGCGGTGGGTGCCGGCAGAAGGC
ACAGTCGTGCCAGGGTTTGCTACCCTTCCCTTGCCTCTCTCGCTCTCGCG
GCCACCTACCAGCCGCAGCAGCAGCAAGAACGAAGTAGATAGCAAGGGAG
ACAGAACGGGCATGGAGGAGGAAAAAGTTGCATGCACACACGAGGATTTG
CATAACAAGAGAAAGGGAAGGAACAGGGGAAAGCAAGAAGGGAGGGAGGG
AGTAGGGATTAAGATGAAGGCGGAGGGAGAAGACGGGAAGGATGAAGACC
ACGAGGATGAGGAGGAAGGGGCCCAAAATCTTCTCTTAAGCATCTTCCCG
CGTGCCTCGCTGCCCTCTTCCCGACGTGACTTATCTCATAAGTCTGGCTC
GTCCTCGTCGTCGTCATCCTCCTTCTCTTCCAGCTTCTCCTCCAGTGGTG
CGCATGCCCAATCTGGCCGCCTCTCGTCTCCGTTGACTCTGCAAGGGCTG
CAGCCAGAAGGAGGCGAAAGACAAGGGAAAGAAAGAGGCTACGAACGAGA
AAAGAGAAGGGAAAGAGGAAGGGGAAGAGGTGGGCGAAGAGGAGCAAGAA
GGACCGGAGACCAAAAAGGAAGAGGAAAAGGTCGGGGAGGTGGTGATGAT
GCCAGAATGGATGGAGAGGGAGAAAGTACAGAGCGTGTTGCCTCAAATTC
TGCGATTTGGCACTGGGAAGACGAAAGAGTGGGAGAGAAAGCGGATGAAA
ATACGAGGGCTAGTGCGGTCCCTGTATTGGACGATGAGGTTTTGAAGATG
CTTTTTGATGAAGGCAGCGGCTGAGTCCTTCTAACTGTTTCATACTTAAA
CAACATGTTGTAAATTTACTAATTCAAAGAATGAAGTCGTGTACATTCTT
CCCGAGGCCCCACCTCTGGGTCTCGCACCTCCATTCCTCAATGTTTGTAT
GAATTGTTTCAACTCTACCTGGCAGACATGTCTTCGAAAGGAATTAGAAT
TTTG
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protein sequence of NO27G01840.1

>NO27G01840.1-protein ID=NO27G01840.1-protein|Name=NO27G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=855bp
MVHCENNRQIHTHPHSDRCFERSYRCSKNTSLPLPRSHLPDYPLASTRSR
YRRRSLASGESESQAVAPEEGEKGREEGEANEVETPFADLVFSRNDPLSQ
VPYALTAFHRLHAEGRISRERVVTRLRMWQAWSLAVGRDVTYSLSSAIAK
ALSITPIELESPSTLLTSPPCSALRAETIGKFHRIAVASQALRGTPFFIS
ANDESRACIFSISDPESDYIVQTANDICQKWLIDPQSDLEAQILGRHAIQ
LLVHPALVCREDRVTYAESMLILGMTEMTPSKQSFLLKGCPRDGEAKLFL
ITNHQVLLPVPVPSSAGKGGGLSEEGKARGAMGGARYVYAALQYIDICPP
SRHITDQPGKRYMKCARNFRRDNNLSRWPLPSPSSLPPSSPFSLSTSLPP
PLPFPAHLSSLSPTISSISSSSATTDCCYSGPCSLFVPPAREKRAKMTRS
EGEGGDGEGRGEGGKRGNDTAAAAAAAAAQGVRETTKTAGGAAAACLEVD
MQVSTGIGAILDFVDNNGSAAVVQAAAAVAASTTTASVGGGITAPRGHTD
TDSCLHNPRQNSGENVLKEDCKDDNHQHHHHQQRQQQQQQRWVPAEGTVV
PGFATLPLPLSLSRPPTSRSSSKNEVDSKGDRTGMEEEKVACTHEDLHNK
RKGRNRGKQEGREGVGIKMKAEGEDGKDEDHEDEEEGAQNLLLSIFPRAS
LPSSRRDLSHKSGSSSSSSSSFSSSFSSSGAHAQSGRLSSPLTLQGLQPE
GGERQGKERGYEREKRRERGRGRGGRRGARRTGDQKGRGKGRGGGDDARM
DGEGESTERVASNSAIWHWEDERVGEKADENTRASAVPVLDDEVLKMLFD
EGSG*
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protein sequence of NO27G01840.2

>NO27G01840.2-protein ID=NO27G01840.2-protein|Name=NO27G01840.2|organism=Nannochloropsis oceanica|type=polypeptide|length=868bp
MNQETGKRNQKPCLHCSRDKVKCDGNFPCDRCFERSYRCSKNTSLPLPRS
HLPDYPLASTRSRYRRRSLASGESESQAVAPEEGEKGREEGEANEVETPF
ADLVFSRNDPLSQVPYALTAFHRLHAEGRISRERVVTRLRMWQAWSLAVG
RDVTYSLSSAIAKALSITPIELESPSTLLTSPPCSALRAETIGKFHRIAV
ASQALRGTPFFISANDESRACIFSISDPESDYIVQTANDICQKWLIDPQS
DLEAQILGRHAIQLLVHPALVCREDRVTYAESMLILGMTEMTPSKQSFLL
KGCPRDGEAKLFLITNHQVLLPVPVPSSAGKGGGLSEEGKARGAMGGARY
VYAALQYIDICPPSRHITDQPGKRYMKCARNFRRDNNLSRWPLPSPSSLP
PSSPFSLSTSLPPPLPFPAHLSSLSPTISSISSSSATTDCCYSGPCSLFV
PPAREKRAKMTRSEGEGGDGEGRGEGGKRGNDTAAAAAAAAAQGVRETTK
TAGGAAAACLEVDMQVSTGIGAILDFVDNNGSAAVVQAAAAVAASTTTAS
VGGGITAPRGHTDTDSCLHNPRQNSGENVLKEDCKDDNHQHHHHQQRQQQ
QQQRWVPAEGTVVPGFATLPLPLSLSRPPTSRSSSKNEVDSKGDRTGMEE
EKVACTHEDLHNKRKGRNRGKQEGREGVGIKMKAEGEDGKDEDHEDEEEG
AQNLLLSIFPRASLPSSRRDLSHKSGSSSSSSSSFSSSFSSSGAHAQSGR
LSSPLTLQGLQPEGGERQGKERGYEREKRRERGRGRGGRRGARRTGDQKG
RGKGRGGGDDARMDGEGESTERVASNSAIWHWEDERVGEKADENTRASAV
PVLDDEVLKMLFDEGSG*
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protein sequence of NO27G01840.3

>NO27G01840.3-protein ID=NO27G01840.3-protein|Name=NO27G01840.3|organism=Nannochloropsis oceanica|type=polypeptide|length=855bp
MVHCENNRQIHTHPHSDRCFERSYRCSKNTSLPLPRSHLPDYPLASTRSR
YRRRSLASGESESQAVAPEEGEKGREEGEANEVETPFADLVFSRNDPLSQ
VPYALTAFHRLHAEGRISRERVVTRLRMWQAWSLAVGRDVTYSLSSAIAK
ALSITPIELESPSTLLTSPPCSALRAETIGKFHRIAVASQALRGTPFFIS
ANDESRACIFSISDPESDYIVQTANDICQKWLIDPQSDLEAQILGRHAIQ
LLVHPALVCREDRVTYAESMLILGMTEMTPSKQSFLLKGCPRDGEAKLFL
ITNHQVLLPVPVPSSAGKGGGLSEEGKARGAMGGARYVYAALQYIDICPP
SRHITDQPGKRYMKCARNFRRDNNLSRWPLPSPSSLPPSSPFSLSTSLPP
PLPFPAHLSSLSPTISSISSSSATTDCCYSGPCSLFVPPAREKRAKMTRS
EGEGGDGEGRGEGGKRGNDTAAAAAAAAAQGVRETTKTAGGAAAACLEVD
MQVSTGIGAILDFVDNNGSAAVVQAAAAVAASTTTASVGGGITAPRGHTD
TDSCLHNPRQNSGENVLKEDCKDDNHQHHHHQQRQQQQQQRWVPAEGTVV
PGFATLPLPLSLSRPPTSRSSSKNEVDSKGDRTGMEEEKVACTHEDLHNK
RKGRNRGKQEGREGVGIKMKAEGEDGKDEDHEDEEEGAQNLLLSIFPRAS
LPSSRRDLSHKSGSSSSSSSSFSSSFSSSGAHAQSGRLSSPLTLQGLQPE
GGERQGKERGYEREKRRERGRGRGGRRGARRTGDQKGRGKGRGGGDDARM
DGEGESTERVASNSAIWHWEDERVGEKADENTRASAVPVLDDEVLKMLFD
EGSG*
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protein sequence of NO27G01840.4

>NO27G01840.4-protein ID=NO27G01840.4-protein|Name=NO27G01840.4|organism=Nannochloropsis oceanica|type=polypeptide|length=855bp
MVHCENNRQIHTHPHSDRCFERSYRCSKNTSLPLPRSHLPDYPLASTRSR
YRRRSLASGESESQAVAPEEGEKGREEGEANEVETPFADLVFSRNDPLSQ
VPYALTAFHRLHAEGRISRERVVTRLRMWQAWSLAVGRDVTYSLSSAIAK
ALSITPIELESPSTLLTSPPCSALRAETIGKFHRIAVASQALRGTPFFIS
ANDESRACIFSISDPESDYIVQTANDICQKWLIDPQSDLEAQILGRHAIQ
LLVHPALVCREDRVTYAESMLILGMTEMTPSKQSFLLKGCPRDGEAKLFL
ITNHQVLLPVPVPSSAGKGGGLSEEGKARGAMGGARYVYAALQYIDICPP
SRHITDQPGKRYMKCARNFRRDNNLSRWPLPSPSSLPPSSPFSLSTSLPP
PLPFPAHLSSLSPTISSISSSSATTDCCYSGPCSLFVPPAREKRAKMTRS
EGEGGDGEGRGEGGKRGNDTAAAAAAAAAQGVRETTKTAGGAAAACLEVD
MQVSTGIGAILDFVDNNGSAAVVQAAAAVAASTTTASVGGGITAPRGHTD
TDSCLHNPRQNSGENVLKEDCKDDNHQHHHHQQRQQQQQQRWVPAEGTVV
PGFATLPLPLSLSRPPTSRSSSKNEVDSKGDRTGMEEEKVACTHEDLHNK
RKGRNRGKQEGREGVGIKMKAEGEDGKDEDHEDEEEGAQNLLLSIFPRAS
LPSSRRDLSHKSGSSSSSSSSFSSSFSSSGAHAQSGRLSSPLTLQGLQPE
GGERQGKERGYEREKRRERGRGRGGRRGARRTGDQKGRGKGRGGGDDARM
DGEGESTERVASNSAIWHWEDERVGEKADENTRASAVPVLDDEVLKMLFD
EGSG*
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Synonyms
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