NO27G01770, NO27G01770 (gene) Nannochloropsis oceanica

Overview
NameNO27G01770
Unique NameNO27G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1850
Alignment locationchr27:596320..598169 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:596320..598169 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01770.1NO27G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533584gene_9904Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01770.1NO27G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01770 ID=NO27G01770|Name=NO27G01770|organism=Nannochloropsis oceanica|type=gene|length=1850bp
ATGGCTTTAGAGGGCATCATTTGCCTGGCTGCGTTTGGAATCGCCGCCGG
GGGCGTGGCTGCCCTCCTCGGCTCACAAGACATGGACGACCAACAACGTC
GAGGGCTTCATCCGCATTACCAAGCTTACACGGAAGCCTCCCTATTCTTG
GATAATGGCCCACAGCGGCAACCCCGTCGATATCATCACTATCGCACCGG
AAACATGCTGGACGAGGACGACAACCTTTTCCCCCTCCCTCTCGACGATC
GTCAGCAGCGGCTCTGGCGATCTCGACGATTCATCCTCGCACATGAGCCC
TCGAGGCAGCCTCCGCCGGCCCCTATTCGTCGATACCATAGGGCCCGCTA
TGCACGCTCTCTACATGTTAGCCCTCATCGGCGAGACAGAGGAGAAGTTG
TAGATGTAGTAGCTATGCGGCCTATTTCTATCCCTCATGTACATCTTTCT
GGGGAAGAAGAGGAGAAGCAGCAAGAGCAGCAGCAAAGTTCACGAGAGCA
GCAGTTGCAGCAACAGCAGCAACAGCAGCCGCACTCCCAAGGAGGAGGAG
GGGGAGGCACTTCAGCAGTCATAACGTCTCTCCCACCTCTCCCTACTCTC
CCCCTGTGGCGCCAGGAACAAACCGCATCCACAGTAGCCCCACCGGCCGC
TGGCGATGCTATGGTACGCATGCTACGGCGGGCACAGGAGCAAAGCTATG
AGCCACCACTCCGAGTGAAAATGTATCATAAGGGAGTCAGTCAGGGATCT
TTGCCGTTGTCCTCATCCTCGAAAAAGCAAAAGCCCTACCATCCTCACTC
CCCGTACTCTGGTCCGCGTTTAAGCCGGTTGATGCTAGCCGTGTTTGCCA
GTCAACGGGCCTCGGTACACCGCCTACTACGATTAGGTACAGAGGATATT
GAGGCCCACGATGCTCGGGGACGAACAGCCTTGTGGTGGGCTTGTCGATG
GGGGGAGACAGCAATGGTACGCTTGTTGTTGAGGGCAGGTGCGTGTGAGC
GATCGAGGGATTACGAAGGGAGCACTCCACGGGATGCGGCCAAGATGGGA
CCGGTAGCTCGTGTATGTTTGGAGCTGTTGAAGGAGGCAGAGCGGGCGAA
CTTGCTCTGGAAGGTGCGGATGTTAAAAGAGAAGGAAAATGAGGCAGGGG
ATGCAGCAAAGGAGAGAGAGTGGGTTTCAAGGAGAAAAGAGGGGTATCCG
GAGATAGTGAATAAAGATGGCTATGACTATGACGAGTTTATGTTTGAAGA
GAGTCTCTCGTGCGGCTTGTCGTGGCCCGTGGTGATACTGCGGACGGTGC
CCTCTCCCCGCGGCTGCTGGTGGATTCCCGGAGGGCCAGGGAGCAGCAGA
AGCAGCAGTGAGTTTGGCAGGATTAAGAGGATAAAGATGAAAAAAGTGCC
ACGAGACGTGCGGGCGGCAGTCATGGAGCACGTGGTGGGATGCGGGAGTG
GTAGTAGCGGAGGAGCGAAGGGCTTGGCTGATGATATTTTTATCGAGCTA
CGACAGATGCTTTTGTAGGGCCACGACACGGAAGTAAGTGAGAGAATGAG
GGGTTTAGAACCCTAACGACGAGGGCAAGACATGGTTCAATGGTCGCACA
CACGCTCAAAGAGAGGGATAGGTGCATGTGTTTGAAGTGGAGGGAAGAAA
GTCGCGAGGCTGCTGGCCCAAAAAAATCTACCTTATATCACATTTTCCTT
GACAGCCTCCCTCATTAAAAGTCTGTGCATCTGGCAACGAAATCATGAAT
CGTTGTCTTGGTGAATTTGGGAAGTGTTTGAGAGCCGATGCCAACCAGCA
AGATCGACTCAGATCGAACACGGGGCATGATGACCCCACTATCGCGAAAT
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protein sequence of NO27G01770.1

>NO27G01770.1-protein ID=NO27G01770.1-protein|Name=NO27G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp
MALEGIICLAAFGIAAGGVAALLGSQDMDDQQRRGLHPHYQAYTEASLFL
DNGPQRQPRRYHHYRTGNMLDEDDNLFPLPLDDRQQRLWRSRRFILAHEP
SRQPPPAPIRRYHRARYARSLHVSPHRRDRGEVVDVVAMRPISIPHVHLS
GEEEEKQQEQQQSSREQQLQQQQQQQPHSQGGGGGGTSAVITSLPPLPTL
PLWRQEQTASTVAPPAAGDAMVRMLRRAQEQSYEPPLRVKMYHKGVSQGS
LPLSSSSKKQKPYHPHSPYSGPRLSRLMLAVFASQRASVHRLLRLGTEDI
EAHDARGRTALWWACRWGETAMVRLLLRAGACERSRDYEGSTPRDAAKMG
PVARVCLELLKEAERANLLWKVRMLKEKENEAGDAAKEREWVSRRKEGYP
EIVNKDGYDYDEFMFEESLSCGLSWPVVILRTVPSPRGCWWIPGGPGSSR
SSSEFGRIKRIKMKKVPRDVRAAVMEHVVGCGSGSSGGAKGLADDIFIEL
RQMLL*
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Synonyms
Publications