NO27G01770.1, NO27G01770.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G01770.1
Unique Name	NO27G01770.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1850
Alignment location	chr27:596320..598169 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:596320..598169 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO27G01770.1 vs.

BLAST of NO27G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G01770	NO27G01770	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01770.1	NO27G01770.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01770.1.cds1	NO27G01770.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:596320..598169-
coding sequence from alignment at chr27:596320..598169-

mRNA sequence

>NO27G01770.1 ID=NO27G01770.1|Name=NO27G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp
ATGGCTTTAGAGGGCATCATTTGCCTGGCTGCGTTTGGAATCGCCGCCGG
GGGCGTGGCTGCCCTCCTCGGCTCACAAGACATGGACGACCAACAACGTC
GAGGGCTTCATCCGCATTACCAAGCTTACACGGAAGCCTCCCTATTCTTG
GATAATGGCCCACAGCGGCAACCCCGTCGATATCATCACTATCGCACCGG
AAACATGCTGGACGAGGACGACAACCTTTTCCCCCTCCCTCTCGACGATC
GTCAGCAGCGGCTCTGGCGATCTCGACGATTCATCCTCGCACATGAGCCC
TCGAGGCAGCCTCCGCCGGCCCCTATTCGTCGATACCATAGGGCCCGCTA
TGCACGCTCTCTACATGTTAGCCCTCATCGGCGAGACAGAGGAGAAGTTG
TAGATGTAGTAGCTATGCGGCCTATTTCTATCCCTCATGTACATCTTTCT
GGGGAAGAAGAGGAGAAGCAGCAAGAGCAGCAGCAAAGTTCACGAGAGCA
GCAGTTGCAGCAACAGCAGCAACAGCAGCCGCACTCCCAAGGAGGAGGAG
GGGGAGGCACTTCAGCAGTCATAACGTCTCTCCCACCTCTCCCTACTCTC
CCCCTGTGGCGCCAGGAACAAACCGCATCCACAGTAGCCCCACCGGCCGC
TGGCGATGCTATGGTACGCATGCTACGGCGGGCACAGGAGCAAAGCTATG
AGCCACCACTCCGAGTGAAAATGTATCATAAGGGAGTCAGTCAGGGATCT
TTGCCGTTGTCCTCATCCTCGAAAAAGCAAAAGCCCTACCATCCTCACTC
CCCGTACTCTGGTCCGCGTTTAAGCCGGTTGATGCTAGCCGTGTTTGCCA
GTCAACGGGCCTCGGTACACCGCCTACTACGATTAGGTACAGAGGATATT
GAGGCCCACGATGCTCGGGGACGAACAGCCTTGTGGTGGGCTTGTCGATG
GGGGGAGACAGCAATGGTACGCTTGTTGTTGAGGGCAGGTGCGTGTGAGC
GATCGAGGGATTACGAAGGGAGCACTCCACGGGATGCGGCCAAGATGGGA
CCGGTAGCTCGTGTATGTTTGGAGCTGTTGAAGGAGGCAGAGCGGGCGAA
CTTGCTCTGGAAGGTGCGGATGTTAAAAGAGAAGGAAAATGAGGCAGGGG
ATGCAGCAAAGGAGAGAGAGTGGGTTTCAAGGAGAAAAGAGGGGTATCCG
GAGATAGTGAATAAAGATGGCTATGACTATGACGAGTTTATGTTTGAAGA
GAGTCTCTCGTGCGGCTTGTCGTGGCCCGTGGTGATACTGCGGACGGTGC
CCTCTCCCCGCGGCTGCTGGTGGATTCCCGGAGGGCCAGGGAGCAGCAGA
AGCAGCAGTGAGTTTGGCAGGATTAAGAGGATAAAGATGAAAAAAGTGCC
ACGAGACGTGCGGGCGGCAGTCATGGAGCACGTGGTGGGATGCGGGAGTG
GTAGTAGCGGAGGAGCGAAGGGCTTGGCTGATGATATTTTTATCGAGCTA
CGACAGATGCTTTTGTAGGGCCACGACACGGAAGTAAGTGAGAGAATGAG
GGGTTTAGAACCCTAACGACGAGGGCAAGACATGGTTCAATGGTCGCACA
CACGCTCAAAGAGAGGGATAGGTGCATGTGTTTGAAGTGGAGGGAAGAAA
GTCGCGAGGCTGCTGGCCCAAAAAAATCTACCTTATATCACATTTTCCTT
GACAGCCTCCCTCATTAAAAGTCTGTGCATCTGGCAACGAAATCATGAAT
CGTTGTCTTGGTGAATTTGGGAAGTGTTTGAGAGCCGATGCCAACCAGCA
AGATCGACTCAGATCGAACACGGGGCATGATGACCCCACTATCGCGAAAT

protein sequence of NO27G01770.1

>NO27G01770.1-protein ID=NO27G01770.1-protein|Name=NO27G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp
MALEGIICLAAFGIAAGGVAALLGSQDMDDQQRRGLHPHYQAYTEASLFL
DNGPQRQPRRYHHYRTGNMLDEDDNLFPLPLDDRQQRLWRSRRFILAHEP
SRQPPPAPIRRYHRARYARSLHVSPHRRDRGEVVDVVAMRPISIPHVHLS
GEEEEKQQEQQQSSREQQLQQQQQQQPHSQGGGGGGTSAVITSLPPLPTL
PLWRQEQTASTVAPPAAGDAMVRMLRRAQEQSYEPPLRVKMYHKGVSQGS
LPLSSSSKKQKPYHPHSPYSGPRLSRLMLAVFASQRASVHRLLRLGTEDI
EAHDARGRTALWWACRWGETAMVRLLLRAGACERSRDYEGSTPRDAAKMG
PVARVCLELLKEAERANLLWKVRMLKEKENEAGDAAKEREWVSRRKEGYP
EIVNKDGYDYDEFMFEESLSCGLSWPVVILRTVPSPRGCWWIPGGPGSSR
SSSEFGRIKRIKMKKVPRDVRAAVMEHVVGCGSGSSGGAKGLADDIFIEL
RQMLL*

mRNA from alignment at chr27:596320..598169-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G01770.1 ID=NO27G01770.1|Name=NO27G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp|location=Sequence derived from alignment at chr27:596320..598169- (Nannochloropsis oceanica)
ATGGCTTTAGAGGGCATCATTTGCCTGGCTGCGTTTGGAATCGCCGCCGG
GGGCGTGGCTGCCCTCCTCGGCTCACAAGACATGGACGACCAACAACGTC
GAGGGCTTCATCCGCATTACCAAGCTTACACGGAAGCCTCCCTATTCTTG
GATAATGGCCCACAGCGGCAACCCCGTCGATATCATCACTATCGCACCGG
AAACATGCTGGACGAGGACGACAACCTTTTCCCCCTCCCTCTCGACGATC
GTCAGCAGCGGCTCTGGCGATCTCGACGATTCATCCTCGCACATGAGCCC
TCGAGGCAGCCTCCGCCGGCCCCTATTCGTCGATACCATAGGGCCCGCTA
TGCACGCTCTCTACATGTTAGCCCTCATCGGCGAGACAGAGGAGAAGTTG
TAGATGTAGTAGCTATGCGGCCTATTTCTATCCCTCATGTACATCTTTCT
GGGGAAGAAGAGGAGAAGCAGCAAGAGCAGCAGCAAAGTTCACGAGAGCA
GCAGTTGCAGCAACAGCAGCAACAGCAGCCGCACTCCCAAGGAGGAGGAG
GGGGAGGCACTTCAGCAGTCATAACGTCTCTCCCACCTCTCCCTACTCTC
CCCCTGTGGCGCCAGGAACAAACCGCATCCACAGTAGCCCCACCGGCCGC
TGGCGATGCTATGGTACGCATGCTACGGCGGGCACAGGAGCAAAGCTATG
AGCCACCACTCCGAGTGAAAATGTATCATAAGGGAGTCAGTCAGGGATCT
TTGCCGTTGTCCTCATCCTCGAAAAAGCAAAAGCCCTACCATCCTCACTC
CCCGTACTCTGGTCCGCGTTTAAGCCGGTTGATGCTAGCCGTGTTTGCCA
GTCAACGGGCCTCGGTACACCGCCTACTACGATTAGGTACAGAGGATATT
GAGGCCCACGATGCTCGGGGACGAACAGCCTTGTGGTGGGCTTGTCGATG
GGGGGAGACAGCAATGGTACGCTTGTTGTTGAGGGCAGGTGCGTGTGAGC
GATCGAGGGATTACGAAGGGAGCACTCCACGGGATGCGGCCAAGATGGGA
CCGGTAGCTCGTGTATGTTTGGAGCTGTTGAAGGAGGCAGAGCGGGCGAA
CTTGCTCTGGAAGGTGCGGATGTTAAAAGAGAAGGAAAATGAGGCAGGGG
ATGCAGCAAAGGAGAGAGAGTGGGTTTCAAGGAGAAAAGAGGGGTATCCG
GAGATAGTGAATAAAGATGGCTATGACTATGACGAGTTTATGTTTGAAGA
GAGTCTCTCGTGCGGCTTGTCGTGGCCCGTGGTGATACTGCGGACGGTGC
CCTCTCCCCGCGGCTGCTGGTGGATTCCCGGAGGGCCAGGGAGCAGCAGA
AGCAGCAGTGAGTTTGGCAGGATTAAGAGGATAAAGATGAAAAAAGTGCC
ACGAGACGTGCGGGCGGCAGTCATGGAGCACGTGGTGGGATGCGGGAGTG
GTAGTAGCGGAGGAGCGAAGGGCTTGGCTGATGATATTTTTATCGAGCTA
CGACAGATGCTTTTGTAGGGCCACGACACGGAAGTAAGTGAGAGAATGAG
GGGTTTAGAACCCTAACGACGAGGGCAAGACATGGTTCAATGGTCGCACA
CACGCTCAAAGAGAGGGATAGGTGCATGTGTTTGAAGTGGAGGGAAGAAA
GTCGCGAGGCTGCTGGCCCAAAAAAATCTACCTTATATCACATTTTCCTT
GACAGCCTCCCTCATTAAAAGTCTGTGCATCTGGCAACGAAATCATGAAT
CGTTGTCTTGGTGAATTTGGGAAGTGTTTGAGAGCCGATGCCAACCAGCA
AGATCGACTCAGATCGAACACGGGGCATGATGACCCCACTATCGCGAAAT

Coding sequence (CDS) from alignment at chr27:596320..598169-

>NO27G01770.1 ID=NO27G01770.1|Name=NO27G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at chr27:596320..598169- (Nannochloropsis oceanica)
ATGGCTTTAGAGGGCATCATTTGCCTGGCTGCGTTTGGAATCGCCGCCGG
GGGCGTGGCTGCCCTCCTCGGCTCACAAGACATGGACGACCAACAACGTC
GAGGGCTTCATCCGCATTACCAAGCTTACACGGAAGCCTCCCTATTCTTG
GATAATGGCCCACAGCGGCAACCCCGTCGATATCATCACTATCGCACCGG
AAACATGCTGGACGAGGACGACAACCTTTTCCCCCTCCCTCTCGACGATC
GTCAGCAGCGGCTCTGGCGATCTCGACGATTCATCCTCGCACATGAGCCC
TCGAGGCAGCCTCCGCCGGCCCCTATTCGTCGATACCATAGGGCCCGCTA
TGCACGCTCTCTACATGTTAGCCCTCATCGGCGAGACAGAGGAGAAGTTG
TAGATGTAGTAGCTATGCGGCCTATTTCTATCCCTCATGTACATCTTTCT
GGGGAAGAAGAGGAGAAGCAGCAAGAGCAGCAGCAAAGTTCACGAGAGCA
GCAGTTGCAGCAACAGCAGCAACAGCAGCCGCACTCCCAAGGAGGAGGAG
GGGGAGGCACTTCAGCAGTCATAACGTCTCTCCCACCTCTCCCTACTCTC
CCCCTGTGGCGCCAGGAACAAACCGCATCCACAGTAGCCCCACCGGCCGC
TGGCGATGCTATGGTACGCATGCTACGGCGGGCACAGGAGCAAAGCTATG
AGCCACCACTCCGAGTGAAAATGTATCATAAGGGAGTCAGTCAGGGATCT
TTGCCGTTGTCCTCATCCTCGAAAAAGCAAAAGCCCTACCATCCTCACTC
CCCGTACTCTGGTCCGCGTTTAAGCCGGTTGATGCTAGCCGTGTTTGCCA
GTCAACGGGCCTCGGTACACCGCCTACTACGATTAGGTACAGAGGATATT
GAGGCCCACGATGCTCGGGGACGAACAGCCTTGTGGTGGGCTTGTCGATG
GGGGGAGACAGCAATGGTACGCTTGTTGTTGAGGGCAGGTGCGTGTGAGC
GATCGAGGGATTACGAAGGGAGCACTCCACGGGATGCGGCCAAGATGGGA
CCGGTAGCTCGTGTATGTTTGGAGCTGTTGAAGGAGGCAGAGCGGGCGAA
CTTGCTCTGGAAGGTGCGGATGTTAAAAGAGAAGGAAAATGAGGCAGGGG
ATGCAGCAAAGGAGAGAGAGTGGGTTTCAAGGAGAAAAGAGGGGTATCCG
GAGATAGTGAATAAAGATGGCTATGACTATGACGAGTTTATGTTTGAAGA
GAGTCTCTCGTGCGGCTTGTCGTGGCCCGTGGTGATACTGCGGACGGTGC
CCTCTCCCCGCGGCTGCTGGTGGATTCCCGGAGGGCCAGGGAGCAGCAGA
AGCAGCAGTGAGTTTGGCAGGATTAAGAGGATAAAGATGAAAAAAGTGCC
ACGAGACGTGCGGGCGGCAGTCATGGAGCACGTGGTGGGATGCGGGAGTG
GTAGTAGCGGAGGAGCGAAGGGCTTGGCTGATGATATTTTTATCGAGCTA
CGACAGATGCTTTTGTAG

Synonyms

Publications