NO27G01740, NO27G01740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G01740 vs. NCBI_GenBank
Match: CBJ33954.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 149.1 bits (375), Expect = 2.300e-32 Identity = 96/247 (38.87%), Postives = 134/247 (54.25%), Query Frame = 0 Query: 91 VGATRGGA-----STAVPAPAAG------GKKQG--SLLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIVRK--AGLPFT-------LDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWP----PILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTITA--KIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLSAASN 310 V RGG AVPAP G G K G LL YL LDT+P++TK ++G+IC GD+++Q + K A FT L+ KRLAI+ V+GAL++ P VHYWF ++ +K + P + L ++LDQT+GA +N+GF+ A AL +G+ GG S A ++ W ++ +KLWP+AN+INF+ VP K RVLF N V + WN+YLSAA N Sbjct: 55 VRRARGGVLLRRRGVAVPAPDNGGLVVESGNKNGGDGLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYGVLGALWIAPVVHYWFDALEAATKDKKAVAGAPAPSFAMRMFKALKMVTLDQTIGAPLINAGFMFLFTFATALTSGA-------GGIESGKKAGTMVKNGIWSTMLVCWKLWPIANMINFAFVPAKLRVLFLNFVGLGWNIYLSAAVN 294
BLAST of NO27G01740 vs. NCBI_GenBank
Match: CBJ49283.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 125.9 bits (315), Expect = 2.100e-25 Identity = 70/214 (32.71%), Postives = 115/214 (53.74%), Query Frame = 0 Query: 92 GATRGGASTAVPAPAAGGKKQGSLLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIVRKAGLPFTLDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTITAKIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLS 306 GA+ GG A G + YL L+ RPLLTKS S+G+I +++ Q + P + + F++VGA+++G +H+W+GF++ + + R+ + KW ++LQ+ LDQT+GAS +NSG+ A + G FP G S+I K+ + M+M N++LWP + +NF+ +P RVL +N V+V W +S Sbjct: 84 GASGGGVEDAGKIKGRGVSRMWGR---YLHALENRPLLTKSLSSGVISGTANLIEQTL-----SPAAFSLVDWSAFTLVGAVFIGTVLHHWYGFLERMGNSEVITSRI-KSKWGRVVLQVVLDQTIGASLVNSGYFACHTVCLAGLTGRAFPLPELG---SSIVEKVTSRYVVMMMNNFRLWPWVSFVNFAFIPADLRVLVSNFVAVLWGYLMS 285
BLAST of NO27G01740 vs. NCBI_GenBank
Match: ADG35815.1 (PXMP2/4 family protein 2, partial [Fucus ceranoides]) HSP 1 Score: 123.2 bits (308), Expect = 1.400e-24 Identity = 78/218 (35.78%), Postives = 117/218 (53.67%), Query Frame = 0 Query: 97 GASTAVPAPAAGGKKQGSLLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYI--VRKAGLP-------FTLDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTITAKIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLS 306 G S + ++ +K G L K YL +LD RPL TK ++G+ICA GDV++Q + A P L+ KRLAI+ +GA++V P HYWF +DD K +GK L +++DQ +GA +N+GF+ A A+V+G+ ++ ++ ++LWP+ANLINF+ VP K RVLF N V + WN++LS Sbjct: 1 GDSMSSSVGSSDVEKPGVLNK-YLRVLDRRPLETKMITSGVICAIGDVVAQALSFSNSAVTPNNLRTFANALEFKRLAIYGALGAVWVAPLCHYWFDALDDFFKGDNNPLDTFKGKMIKALKMVTVDQGIGAPVVNAGFMFLFTLATAMVSGT-----SPTSAFKKAGRFVRDNIKGTMLVCWRLWPVANLINFAYVPPKLRVLFLNFVGLGWNIFLS 212
BLAST of NO27G01740 vs. NCBI_GenBank
Match: ADG35821.1 (PXMP2/4 family protein 2, partial [Fucus spiralis]) HSP 1 Score: 123.2 bits (308), Expect = 1.400e-24 Identity = 71/212 (33.49%), Postives = 112/212 (52.83%), Query Frame = 0 Query: 103 PAPAAGGKKQGSLLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIV---------RKAGLPFTLDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTITAKIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLS 306 P+ + ++ +L YL +LD RPL TK ++G+ICA GDV++Q + L+ KRLAI+ +GA++V P HYWF ++D K +GK L +++DQ +GA +N+GF+ A A+V+G+ ++ ++ ++LWP+ANLINF+ VP K RVLF N V + WN++LS Sbjct: 6 PSVGSSDVEKPGVLNKYLRVLDRRPLETKMITSGVICAIGDVVAQALSFSNSAVTPNNLRSFANALEFKRLAIYGALGAVWVAPLCHYWFDALEDFFKGDNNPLDTFKGKMIKALKMVTVDQGIGAPVVNAGFMFLFTLATAMVSGT-----SPTSAFKKAGRFVRDNIKGTMLVCWRLWPVANLINFAYVPPKLRVLFLNFVGLGWNIFLS 212
BLAST of NO27G01740 vs. NCBI_GenBank
Match: ADG35816.1 (PXMP2/4 family protein 2, partial [Fucus spiralis var. platycarpus] >ADG35817.1 PXMP2/4 family protein 2, partial [Fucus spiralis var. platycarpus] >ADG35818.1 PXMP2/4 family protein 2, partial [Fucus spiralis var. platycarpus] >ADG35819.1 PXMP2/4 family protein 2, partial [Fucus spiralis var. platycarpus] >ADG35820.1 PXMP2/4 family protein 2, partial [Fucus spiralis] >ADG35822.1 PXMP2/4 family protein 2, partial [Fucus spiralis] >ADG35823.1 PXMP2/4 family protein 2, partial [Fucus spiralis] >ADG35824.1 PXMP2/4 family protein 2, partial [Fucus spiralis] >ADG35825.1 PXMP2/4 family protein 2, partial [Fucus spiralis var. platycarpus] >ADG35826.1 PXMP2/4 family protein 2, partial [Fucus spiralis var. platycarpus] >ADG35827.1 PXMP2/4 family protein 2, partial [Fucus spiralis var. platycarpus] >ADG35828.1 PXMP2/4 family protein 2, partial [Fucus spiralis var. platycarpus] >ADG35829.1 PXMP2/4 family protein 2, partial [Fucus spiralis var. platycarpus] >ADG35830.1 PXMP2/4 family protein 2, partial [Fucus vesiculosus] >ADG35831.1 PXMP2/4 family protein 2, partial [Fucus vesiculosus] >ADG35832.1 PXMP2/4 family protein 2, partial [Fucus vesiculosus] >ADG35833.1 PXMP2/4 family protein 2, partial [Fucus vesiculosus]) HSP 1 Score: 121.7 bits (304), Expect = 4.000e-24 Identity = 75/218 (34.40%), Postives = 115/218 (52.75%), Query Frame = 0 Query: 97 GASTAVPAPAAGGKKQGSLLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIV---------RKAGLPFTLDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTITAKIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLS 306 G S + ++ +K G L K YL +LD RPL TK ++G+ICA GDV++Q + L+ KRLAI+ +GA++V P HYWF ++D K +GK L +++DQ +GA +N+GF+ A A+V+G+ ++ ++ ++LWP+ANLINF+ VP K RVLF N V + WN++LS Sbjct: 1 GDSMSSSVGSSDVEKPGVLNK-YLRVLDRRPLETKMITSGVICAIGDVVAQALSFSNSAVTPNNLRSFANALEFKRLAIYGALGAVWVAPLCHYWFDALEDFFKGDNNPLDTFKGKMIKALKMVTVDQGIGAPVVNAGFMFLFTLATAMVSGT-----SPTSAFKKAGRFVRDNIKGTMLVCWRLWPVANLINFAYVPPKLRVLFLNFVGLGWNIFLS 212
BLAST of NO27G01740 vs. NCBI_GenBank
Match: XP_005710823.1 (unnamed protein product [Chondrus crispus] >CDF40529.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 118.6 bits (296), Expect = 3.400e-23 Identity = 65/191 (34.03%), Postives = 107/191 (56.02%), Query Frame = 0 Query: 115 LLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIVRKAGLPFTLDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTITAKIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLS 306 LL Y+ + T P+ TK+ S G+I GD+L+Q I ++ F LD++R A + G L +GP++HYW+G +D RL G++ ++ +L DQ L A N+ F+L + GSL G S ++ ++ +FWP AN+ LWP A L+NFS+VP F++++ N V++ W++ L+ Sbjct: 141 LLAAYVRAIKTNPVRTKALSTGLIAILGDLLAQKISQRGDGQFVLDMRRSASVGIWGLLALGPALHYWYGILD----------RLFLGRY-AVISKLLSDQLLFAPVCNTAFMLGV--------GSL-----EGNPFSEVSKTVREKFWPSTKANWTLWPAAQLLNFSLVPKTFQIVYVNCVALVWSVILA 307
BLAST of NO27G01740 vs. NCBI_GenBank
Match: EWM19974.1 (hypothetical protein Naga_102529g1 [Nannochloropsis gaditana]) HSP 1 Score: 117.9 bits (294), Expect = 5.800e-23 Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0 Query: 161 VKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFL 246 +KRL +FS +GALYVGP++HYWF +D L K P VAKRLP K PIL QL++DQ+LGAS +NSGFL++LW AQA VA FPFL Sbjct: 1 MKRLGVFSAMGALYVGPAIHYWFALLDSLVKSPAVAKRLPNHKTAPILFQLAIDQSLGASLVNSGFLITLWCAQAFVAHRFFPFL 85
BLAST of NO27G01740 vs. NCBI_GenBank
Match: XP_005706778.1 (peroxisomal membrane protein-related protein [Galdieria sulphuraria] >EME30258.1 peroxisomal membrane protein-related protein [Galdieria sulphuraria]) HSP 1 Score: 115.9 bits (289), Expect = 2.200e-22 Identity = 65/205 (31.71%), Postives = 107/205 (52.20%), Query Frame = 0 Query: 105 PAAGGKKQGSLLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIVRKAGLPFTLDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTITAKIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLSAASN 310 P G SL Y+ L+ RP+LTK+ + +I AF D+++Q++ ++ F +++R G +++GP H W+ ++ L P G+W L ++ LDQT A+ N F L + GH L I K++ +FWP + AN+++WPL I F+V+PL FRVL+ NVV+V W +Y S+ ++ Sbjct: 105 PEGGNNPFVSLYLSYISALEERPILTKAITTSLINAFSDLVAQWLEQRGQSLFHWNIRRTFALGFWGFIFMGPFFHNWYLILERL---------FPSGRW-AFLKKIILDQTFAAAFFNITFFLGTGFLE-----------GHNWHL--IVDKLRHKFWPTMYANWRVWPLVQCITFTVIPLTFRVLWVNVVTVMWVIYFSSLAH 286
BLAST of NO27G01740 vs. NCBI_GenBank
Match: CEM22792.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 115.2 bits (287), Expect = 3.700e-22 Identity = 73/234 (31.20%), Postives = 117/234 (50.00%), Query Frame = 0 Query: 98 ASTAVPAPAAGGKKQGSLLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIVRKAG-----LPFTLDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTI----------------TAKIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLSAASNR 311 A+TA +P+ + Y L+ RPL+TK WS ++ G+ + Q I R+ P LD++RL ++S++G LYVGP +H+WF + L ++P V K LP K + + +DQT+ A +N + VAG+ G + + T ++ E+ PM+ Y +WPLA +IN+S VP+ RVLF + +SV W+ YLS + N+ Sbjct: 49 AATAELSPSESSSPLSKIWGAYCRELELRPLVTKVWSTALVSGLGNAICQNIERRQAESEGREPKPLDLERLLVYSLMGGLYVGPVLHFWFFIPEWLIRQPGV-KGLP--KVGKTIASVGIDQTVLAPIMNGVAYYAYKLIGVGVAGARGVLRGDSDAKTALSLRSVSQGVTDAVNETTELLKTEYVPMMKMQYTIWPLAAVINYSFVPVDLRVLFVSAMSVIWSAYLSGSVNK 279
BLAST of NO27G01740 vs. NCBI_GenBank
Match: XP_642423.1 (pmp22 family protein [Dictyostelium discoideum AX4] >Q54XX9.1 RecName: Full=PXMP2/4 family protein 2 >EAL68437.1 pmp22 family protein [Dictyostelium discoideum AX4]) HSP 1 Score: 112.5 bits (280), Expect = 2.400e-21 Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 0 Query: 118 IYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIVRK---AGLPFTLDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTITAKIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLSAAS 309 +YL LLD PL+TKS S G + GD+L+Q + K F LD KR+A S VG Y GP +HYW+ +D + K EG+ I+ ++ +DQ L A GF+ ++ F+ + G L + +E + + N+ +WP A +INFS+VP RVL+++++S+FW M+LS S Sbjct: 7 LYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYSGPMLHYWYRSLDIMVK--------GEGR-SVIIKKMLIDQLLFAPVAIGGFM------------TVTNFINNKGELKNL-ENFTKELFYAVKINWLIWPAAQIINFSLVPPNLRVLYSSIISIFWGMFLSHIS 178 The following BLAST results are available for this feature:
BLAST of NO27G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G01740 ID=NO27G01740|Name=NO27G01740|organism=Nannochloropsis oceanica|type=gene|length=1818bpback to top protein sequence of NO27G01740.1 >NO27G01740.1-protein ID=NO27G01740.1-protein|Name=NO27G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bpback to top Synonyms
Publications
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