NO27G01740.1, NO27G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01740.1
Unique NameNO27G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr27:586753..588570 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:586753..588570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01740.1 vs.
Match: CBJ33954.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 148.7 bits (374), Expect = 3.100e-32
Identity = 95/247 (38.46%), Postives = 133/247 (53.85%), Query Frame = 0 
Query:   91 VGATRGGA-----STAVPAPAAGG------KKQGS--LLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIVRKAGLP--FTL-------DVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLPEGKWP----PILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGTLSTITA--KIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFWNMYLSAASN 310
            V   RGG        AVPAP  GG       K G   LL  YL  LDT+P++TK  ++G+IC  GD+++Q +  K      FTL       + KRLAI+ V+GAL++ P VHYWF  ++  +K  +     P   +       L  ++LDQT+GA  +N+GF+     A AL +G+       GG  S   A   ++   W  ++  +KLWP+AN+INF+ VP K RVLF N V + WN+YLSAA N
Sbjct:   55 VRRARGGVLLRRRGVAVPAPDNGGLVVESGNKNGGDGLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYGVLGALWIAPVVHYWFDALEAATKDKKAVAGAPAPSFAMRMFKALKMVTLDQTIGAPLINAGFMFLFTFATALTSGA-------GGIESGKKAGTMVKNGIWSTMLVCWKLWPIANMINFAFVPAKLRVLFLNFVGLGWNIYLSAAVN 294
The following BLAST results are available for this feature:
BLAST of NO27G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ33954.13.100e-3238.46conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01740NO27G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01740.1NO27G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01740.1.cds1NO27G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01740.1.cds2NO27G01740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01740.1.cds3NO27G01740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01740.1.cds4NO27G01740.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01740.1.cds5NO27G01740.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01740.1.cds6NO27G01740.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01740.1.cds7NO27G01740.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01740.1 ID=NO27G01740.1|Name=NO27G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGCTTTCGATTCACCGCCTTCTCATCACCCTGGCCCTAGCCCCGGCACT
GGCTTCGTCCTTTGCGGCCTCTTCACTGGCCGTCATCCCGGGGCAACACC
AGCAGCAGCAGCTGGGGCAGCAGCAGCAGCATCAGGACCAGCACCGACAA
GGGGTGCTTTTTGGTGCTCACCGCCGTGCCCTCCTCCTTTCTTCCTCCTC
TTATCCCTCCTCCACCTCCTTCCCCTCCTCGTCTTCCTCCCGACTCATCC
ACGATGCCCCTGCTGCATGGGTGGGGGCCACCCGCGGCGGAGCCTCAACA
GCAGTACCAGCACCAGCAGCAGGAGGAAAGAAACAGGGCAGCCTGTTGAA
GATCTATCTCGACCTGCTCGATACCCGACCACTTCTAACCAAGTCTTGGT
CTGCTGGCATCATTTGTGCCTTTGGGGATGTCCTCTCCCAATACATCGTT
CGCAAGGCTGGCCTTCCTTTCACCCTCGACGTGAAGCGACTCGCCATCTT
CTCCGTCGTGGGGGCTCTCTACGTCGGTCCATCCGTGCACTATTGGTTCG
GTTTTATCGACGACCTGTCCAAGAAACCGCAAGTTGCCAAACGCCTCCCC
GAGGGCAAGTGGCCCCCGATCCTCTTGCAGCTCTCGCTCGATCAGACGCT
GGGTGCCTCTTGCCTCAACAGCGGATTTCTCCTCTCTTTGTGGACCGCCC
AGGCCCTCGTGGCAGGTTCCCTCTTCCCCTTCCTGGGCCACGGTGGCACC
CTCTCAACCATCACGGCCAAAATCCAACGGGAATTCTGGCCCATGCTAAT
GGCGAACTACAAGCTATGGCCACTTGCCAACCTCATCAACTTCTCCGTCG
TGCCTCTCAAGTTTCGGGTATTGTTCGCGAACGTCGTGTCGGTGTTTTGG
AACATGTACCTGTCAGCAGCCAGCAACCGATAG
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protein sequence of NO27G01740.1

>NO27G01740.1-protein ID=NO27G01740.1-protein|Name=NO27G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MLSIHRLLITLALAPALASSFAASSLAVIPGQHQQQQLGQQQQHQDQHRQ
GVLFGAHRRALLLSSSSYPSSTSFPSSSSSRLIHDAPAAWVGATRGGAST
AVPAPAAGGKKQGSLLKIYLDLLDTRPLLTKSWSAGIICAFGDVLSQYIV
RKAGLPFTLDVKRLAIFSVVGALYVGPSVHYWFGFIDDLSKKPQVAKRLP
EGKWPPILLQLSLDQTLGASCLNSGFLLSLWTAQALVAGSLFPFLGHGGT
LSTITAKIQREFWPMLMANYKLWPLANLINFSVVPLKFRVLFANVVSVFW
NMYLSAASNR*
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mRNA from alignment at chr27:586753..588570-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01740.1 ID=NO27G01740.1|Name=NO27G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp|location=Sequence derived from alignment at chr27:586753..588570- (Nannochloropsis oceanica)
ATGCTTTCGATTCACCGCCTTCTCATCACCCTGGCCCTAGCCCCGGCACT
GGCTTCGTCCTTTGCGGCCTCTTCACTGGCCGTCATCCCGGGGCAACACC
AGCAGCAGCAGCTGGGGCAGCAGCAGCAGCATCAGGACCAGCACCGACAA
GGGGTGCTTTTTGGTGGTACGTAGAAAAAGGAGCAGGAGGAAAGGAGGAT
GGGATGGTACGAAAAGCTAGCATTGCTCTTACTAGCGATTTATTGACTTA
TGTCGGCATCGACCCATTCGATGCTGCAGTAGAATAGTCGTCATCATTGT
TTCTGCCGCTACTTCTGCTGCCGCTCCTGCTGCTGCTGTTGCTTCTACTG
ATATTTCTCCGCCCCCCCCCCCCCCACCAACCTTCTCGCAACAGCTCACC
GCCGTGCCCTCCTCCTTTCTTCCTCCTCTTATCCCTCCTCCACCTCCTTC
CCCTCCTCGTCTTCCTCCCGACTCATCCACGATGCCCCTGCTGCATGGGT
GGGGGCCACCCGCGGCGGAGCCTCAACAGCAGTACCAGCACCAGCAGCAG
GAGGAAAGAAACAGGGCAGCCTGTTGAAGATCTATCTCGACCTGCTCGAT
GTAGGTCAAGGAAGGGCAGGGGTGGGGACAAGAGGGGAGGGAGGGATGGA
AAGAGGATATGCACATTTGCTGGTATCGACCGCCCCCTTTCCCCCGTCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCGATTCCCCCCAGACCC
GACCACTTCTAACCAAGTCTTGGTCTGCTGGCATCATTTGTGCCTTTGGG
GATGTCCTCTCCCAATACATCGGTACGTTTTTCTCTCCATCCCTCCCTCC
ATCCCTCCATCACTCCCTCCTATATAATACCGCCTCCACAACCCTCCTTC
CCTCCCTCCCCCCCTCTTCTCCTCCTTCCTCCAGTTCGCAAGGCTGGCCT
TCCTTTCACCCTCGACGTGAAGCGACTCGCCATCTTCTCCGTCGTGGGGG
CTCTCTACGTCGGTCCATCCGTGCACTATTGGTTCGGTTTTATCGACGAC
CTGTCCAAGAAACCGCAAGTTGCCAAACGGTGCGTCCCCTCCCTCTCTCC
CTCCCTCCCTCCCTCCCTCCCACCCAAACAAGAACAAAGATCATCTCTTC
ATCCATCTCGCCCCCTCCCTCCCTCCCTTCCCCCCCTTCCTCCTCCCCCG
CAGCCTCCCCGAGGGCAAGTGGCCCCCGATCCTCTTGCAGCTCTCGCTCG
ATCAGACGCTGGGTGCCTCTTGCCTCAACAGCGGATTTCTCCTCTCTTTG
TGGACCGCCCAGGCCCTCGTGGCAGGTTCCCTCTTCCCCTTCCTGTACGA
TCCCTTGTCCCTTCCTCCCTCCCTCCCTCCCCCCCTCCTTTCCTCCCAAC
CAGAGATAAGATTGATCTATCTCACACACTCAACCCCCCTCCCCTCCCTC
CCTCCCTCCCTCCCTCCCAGGGGCCACGGTGGCACCCTCTCAACCATCAC
GGCCAAAATCCAACGGGAATTCTGGCCCATGCTAATGGTGAGGAGGAGGG
AAGGAGGGAGGGAAGGAGAAAGTGGAGGATCTAATATTGACTCAAGCTTA
ATATAATATTCTTTTTGCCATCGTACCCCCCCCCCCCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGGCGAACTACAAGCT
ATGGCCACTTGCCAACCTCATCAACTTCTCCGTCGTGCCTCTCAAGTTTC
GGGTATTGTTCGCGAACGTCGTGTCGGTGTTTTGGAACATGTACCTGTCA
GCAGCCAGCAACCGATAG
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Coding sequence (CDS) from alignment at chr27:586753..588570-

>NO27G01740.1 ID=NO27G01740.1|Name=NO27G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr27:586753..588570- (Nannochloropsis oceanica)
ATGCTTTCGATTCACCGCCTTCTCATCACCCTGGCCCTAGCCCCGGCACT
GGCTTCGTCCTTTGCGGCCTCTTCACTGGCCGTCATCCCGGGGCAACACC
AGCAGCAGCAGCTGGGGCAGCAGCAGCAGCATCAGGACCAGCACCGACAA
GGGGTGCTTTTTGGTGCTCACCGCCGTGCCCTCCTCCTTTCTTCCTCCTC
TTATCCCTCCTCCACCTCCTTCCCCTCCTCGTCTTCCTCCCGACTCATCC
ACGATGCCCCTGCTGCATGGGTGGGGGCCACCCGCGGCGGAGCCTCAACA
GCAGTACCAGCACCAGCAGCAGGAGGAAAGAAACAGGGCAGCCTGTTGAA
GATCTATCTCGACCTGCTCGATACCCGACCACTTCTAACCAAGTCTTGGT
CTGCTGGCATCATTTGTGCCTTTGGGGATGTCCTCTCCCAATACATCGTT
CGCAAGGCTGGCCTTCCTTTCACCCTCGACGTGAAGCGACTCGCCATCTT
CTCCGTCGTGGGGGCTCTCTACGTCGGTCCATCCGTGCACTATTGGTTCG
GTTTTATCGACGACCTGTCCAAGAAACCGCAAGTTGCCAAACGCCTCCCC
GAGGGCAAGTGGCCCCCGATCCTCTTGCAGCTCTCGCTCGATCAGACGCT
GGGTGCCTCTTGCCTCAACAGCGGATTTCTCCTCTCTTTGTGGACCGCCC
AGGCCCTCGTGGCAGGTTCCCTCTTCCCCTTCCTGGGCCACGGTGGCACC
CTCTCAACCATCACGGCCAAAATCCAACGGGAATTCTGGCCCATGCTAAT
GGCGAACTACAAGCTATGGCCACTTGCCAACCTCATCAACTTCTCCGTCG
TGCCTCTCAAGTTTCGGGTATTGTTCGCGAACGTCGTGTCGGTGTTTTGG
AACATGTACCTGTCAGCAGCCAGCAACCGATAG
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Synonyms
Publications