NO27G01730, NO27G01730 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM22885.1 (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana]) HSP 1 Score: 94.7 bits (234), Expect = 3.300e-16 Identity = 65/173 (37.57%), Postives = 86/173 (49.71%), Query Frame = 0 Query: 6 SSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDP--NFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTIP 177 SS+L+A L S +A G K L VK GR +T SF+I D G++ +P N W NHT KNKT K+A D VT+R +I PNTW+PK AN T T + LP DGL L+++Y+IT K+R+G+GIPSG +P Sbjct: 25 SSLLVAVATLLSNAAAQEYTG--SVCVKSLSVKAGRQATITTSFLISELPD-------TVTEAFYGITVEPLVNSLSW-----------KNHTAKNKT---SKFAGDVDVTLRKTRISPNTWRPKTFANGTGT---GTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVP 171
BLAST of NO27G01730 vs. NCBI_GenBank
Match: XP_005853972.1 (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >EKU22388.1 hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 94.4 bits (233), Expect = 4.400e-16 Identity = 63/171 (36.84%), Postives = 89/171 (52.05%), Query Frame = 0 Query: 6 SSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTIP 177 SS+L+A L S +A G K L VK GR +T SF+I P V G++ +P S S+ NHT KNKT K+A D VT+R +I PNTW+PK+ AN T T + +P +GL L+++Y++T K+R+G+GIPSG +P Sbjct: 5 SSLLVAVATLLSNAAAQEYTG--SVCVKSLSVKAGRQATITTSFLISEV-------PNNVTEVLYGITVEPLVSP---------LSSKNHTAKNKT---SKFAGDVDVTLRKTRISPNTWRPKIFANGTGT---GTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGTYVP 151
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana]) HSP 1 Score: 94.0 bits (232), Expect = 5.700e-16 Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 0 Query: 27 IFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTIPL 178 I Q A L + G+T++VT V+ DD P+ L TD + D F FQS T NKT K K D G++ +KI PNTW+PK++ I D+GD ++ LP DG L ++Y+IT +R+G+ +PSG IPL Sbjct: 187 IIQARAHHLFARAGKTVRVTADLVV--LDD----QPIGRKRAVRALETDDIVFACSLDPFFNFQS---LTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPL 326
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana]) HSP 1 Score: 92.8 bits (229), Expect = 1.300e-15 Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 0 Query: 27 IFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTIPL 178 I Q A PL + G+T++VT V+ DD P V+A + D F+ + D F FQS T NKT K K D G++ +KI PNTW+PK++ I D+GD ++ LP DG L ++Y+IT +R+G+ +PSG IPL Sbjct: 188 IIQARAHPLFARAGKTVRVTADLVV--LDD----QPGRERAVRALPTADIVFA-CSLDPFFNFQS---LTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPL 326
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM30157.1 (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana]) HSP 1 Score: 75.5 bits (184), Expect = 2.100e-10 Identity = 54/172 (31.40%), Postives = 85/172 (49.42%), Query Frame = 0 Query: 1 MKLTASSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDP-VQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTG--VTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGI 170 MK S+ LAG+ALFS+ + V A I Q KPL V+ G + T +FV+ ++ + ATDP + G +T G Q + KN+T K D + IR ++I PN W+PKL T+ + + +P++G L + Y++ K+RVG+G+ Sbjct: 4 MKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSF------ASNATDPAIAVGFAT------------LGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLR---TNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGV 154
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM29458.1 (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana]) HSP 1 Score: 73.6 bits (179), Expect = 8.000e-10 Identity = 59/181 (32.60%), Postives = 86/181 (47.51%), Query Frame = 0 Query: 1 MKLTASSVLLAGVALFSAMSAVSA------DGIFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTI 176 MK SS++LA + SA+ +A D I + KP+ VK G + +T SF+ R+L +A +T PN +D SN N TK + K+ K + T V + ++I PNTW+PKL +NIT G +P GL +Y+I K R+G+ PSG I Sbjct: 1 MKFAISSLILASAVIISAIGRATAQLFPDFDAIGHSTVKPISVKAGGRVTLTTSFLFLE-TRRRQLRELAFADEILYWAT-PNEADIPAYGDLEELSNKNKTKTSH-PKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNIT----GSTNFMSIPTTGLVALEDYKIINKFRIGKRYPSGSVI 174 The following BLAST results are available for this feature:
BLAST of NO27G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G01730 ID=NO27G01730|Name=NO27G01730|organism=Nannochloropsis oceanica|type=gene|length=1499bpback to top protein sequence of NO27G01730.1 >NO27G01730.1-protein ID=NO27G01730.1-protein|Name=NO27G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bpback to top Synonyms
Publications
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