NO27G01730.1, NO27G01730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01730.1
Unique NameNO27G01730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length987
Alignment locationchr27:583310..584808 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:583310..584808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01730.1 vs.
Match: XP_005853972.1 (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526]; EKU22388.1 hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.7 bits (234), Expect = 3.300e-16
Identity = 63/171 (36.84%), Postives = 89/171 (52.05%), Query Frame = 0 
Query:    6 SSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTIP 177
            SS+L+A   L S  +A    G      K L VK GR   +T SF+I          P     V  G++ +P  S           S+ NHT KNKT K   +A D  VT+R  +I PNTW+PK+ AN T T     +   +P +GL L+++Y++T K+R+G+GIPSG  +P
Sbjct:    5 SSLLVAVATLLSNAAAQEYTG--SVCVKSLSVKAGRQATITTSFLISEV-------PNNVTEVLYGITVEPLVSPL---------SSKNHTAKNKTSK---FAGDVDVTLRKTRISPNTWRPKIFANGTGT---GTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGTYVP 151
The following BLAST results are available for this feature:
BLAST of NO27G01730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853972.13.300e-1636.84hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01730NO27G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01730.1NO27G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01730.1.cds1NO27G01730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01730.1.cds2NO27G01730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01730.1.cds3NO27G01730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01730.1.cds4NO27G01730.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01730.1 ID=NO27G01730.1|Name=NO27G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
ACAGCACCCACCCTCTCTTTCAAGAAACATGAAGTTGACTGCCTCCTCCG
TCCTCCTGGCCGGCGTCGCCCTCTTTTCCGCCATGTCCGCTGTCAGCGCC
GACGGCATTTTCCAAACCTATGCCAAGCCCCTGGTGGTGAAGAAGGGCAG
AACCTTGAAAGTTACCCAGAGCTTCGTGATCCAGAACTATGACGACCTCC
GCCGTCTAAGTCCTGTTGCTACGGACCCTGTTCAGGCTGGGCTTTCGACC
GACCCGAATTTTTCTGATTGGAACTTCGATAGCGTCTTCGGATTCCAGTC
CAATAGTAACCATACGAAGAAAAACAAGACAGACAAGGCGGACAAGTGGG
CAGATGATACCGGGGTCACCATCAGATCGGCCAAGATCTTCCCCAATACG
TGGAAGCCTAAGCTGTCTGCGAACATTACCTCGACCGACGATGGTGACGT
CGCCATTTTCGAGCTCCCGCAGGACGGCCTGACACTGAACAGGGAGTACA
GGATCACCTACAAGGTGCGCGTCGGGAGGGGCATTCCCTCTGGTGACACC
ATTCCACTTCCTTTTGCCTTCAACGGCCCCAACGTTGATGGAGACGCGGA
TCTCGAGGTGCTTGTCAGGTAAACAAACGCCTTGGCCTGGCCCCGCTCTC
TAGTGGGAAGTACAGGGTTGAGATGCATCATGTCGCAGCCGTGTCGAGTT
TTCGAAGTGGTGGGCTGTCTGGCGTATGCATGTATGGGCGTTTGTGTTTG
TTTGTTTGTTTGTATTCATCCATGATGTGCACGGCCTAGTCCCTGATCCC
CTTCAGATGATCTGCCTTTTCTGTGTTGTGTCAATGTCTGCATATGTGTC
ATTGTGTGTGTCTTATTGTGTGTGTAGGTGTAGTGGCCTCCTCTTTCAAA
GAGACGAGACGATAAAAAAAAGAAAGAAAACCTGAGTGTCATCTCTTAAC
AAACCATCGTTCCGTTAAACGGAGTTATAATCTCTTT
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protein sequence of NO27G01730.1

>NO27G01730.1-protein ID=NO27G01730.1-protein|Name=NO27G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MKLTASSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFV
IQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNK
TDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDG
LTLNREYRITYKVRVGRGIPSGDTIPLPFAFNGPNVDGDADLEVLVR*
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mRNA from alignment at chr27:583310..584808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01730.1 ID=NO27G01730.1|Name=NO27G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp|location=Sequence derived from alignment at chr27:583310..584808- (Nannochloropsis oceanica)
ACAGCACCCACCCTCTCTTTCAAGAAACATGAAGTTGACTGCCTCCTCCG
TCCTCCTGGCCGGCGTCGCCCTCTTTTCCGCCATGGTAAGTTCCGACTCG
ACCATGTATACATGCGCGAATACGAGCGATATCCCAAAAATCGATACCGT
GCTCACGTTCTCTAATGCCATCGTCCTCCTCCATTTCATGCTCAATCCTT
CCTCCCTTGTCTTACAGTCCGCTGTCAGCGCCGACGGCATTTTCCAAACC
TATGCCAAGCCCCTGGTGGTGAAGAAGGGCAGAACCTTGAAAGTTACCCA
GAGCTTCGTGATCCAGAACTATGACGACCTCCGCCGTCTAAGTCCTGTTG
CTACGGACCCTGTTCAGGCTGGGGTACGTTGAAAGAAGAGGGCAGCGGAG
GAGGAGAGACGGAGGGAGGAGAGAACTTGTCCTAGCAGAGTCGCTACCTG
CCTGTTGACATGCTTGCTAATGTATGACCCGACACAAGTCTCTTTCTCGT
CGCCTGAGCTAGTATTTACATTTCTCATACCTTCCTTCGTTTCCTTCCTT
TCCCTCCCACTTTCTGTTTCCATCCACCTACCACACTTACAGCTTTCGAC
CGACCCGAATTTTTCTGATTGGAACTTCGATAGCGTCTTCGGATTCCAGT
CCAATAGTAACCATACGAAGAAAAACAAGACAGACAAGGCGGACAAGTGG
GCAGATGATACCGGGGTCACCATCAGATCGGCCAAGATCTTCCCCAATAC
GTGGAAGCCTAAGTGAGTAAGACAGGAGGGAAGGGAGGGAGAGGGGGGGA
AGGGAGAAGGAGAGAGGGTGTGGGAGTACGTGTAAATTGAAATCTTTTCT
CGTTTAGCCCTACTTCGAATCTTTATGCCTCCTCCCCTCTCTTTCTCTCC
TCTATTCGACTCGTCCCCAACAGGCTGTCTGCGAACATTACCTCGACCGA
CGATGGTGACGTCGCCATTTTCGAGCTCCCGCAGGACGGCCTGACACTGA
ACAGGGAGTACAGGATCACCTACAAGGTGCGCGTCGGGAGGGGCATTCCC
TCTGGTGACACCATTCCACTTCCTTTTGCCTTCAACGGCCCCAACGTTGA
TGGAGACGCGGATCTCGAGGTGCTTGTCAGGTAAACAAACGCCTTGGCCT
GGCCCCGCTCTCTAGTGGGAAGTACAGGGTTGAGATGCATCATGTCGCAG
CCGTGTCGAGTTTTCGAAGTGGTGGGCTGTCTGGCGTATGCATGTATGGG
CGTTTGTGTTTGTTTGTTTGTTTGTATTCATCCATGATGTGCACGGCCTA
GTCCCTGATCCCCTTCAGATGATCTGCCTTTTCTGTGTTGTGTCAATGTC
TGCATATGTGTCATTGTGTGTGTCTTATTGTGTGTGTAGGTGTAGTGGCC
TCCTCTTTCAAAGAGACGAGACGATAAAAAAAAGAAAGAAAACCTGAGTG
TCATCTCTTAACAAACCATCGTTCCGTTAAACGGAGTTATAATCTCTTT
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Coding sequence (CDS) from alignment at chr27:583310..584808-

>NO27G01730.1 ID=NO27G01730.1|Name=NO27G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr27:583310..584808- (Nannochloropsis oceanica)
ATGAAGTTGACTGCCTCCTCCGTCCTCCTGGCCGGCGTCGCCCTCTTTTC
CGCCATGTCCGCTGTCAGCGCCGACGGCATTTTCCAAACCTATGCCAAGC
CCCTGGTGGTGAAGAAGGGCAGAACCTTGAAAGTTACCCAGAGCTTCGTG
ATCCAGAACTATGACGACCTCCGCCGTCTAAGTCCTGTTGCTACGGACCC
TGTTCAGGCTGGGCTTTCGACCGACCCGAATTTTTCTGATTGGAACTTCG
ATAGCGTCTTCGGATTCCAGTCCAATAGTAACCATACGAAGAAAAACAAG
ACAGACAAGGCGGACAAGTGGGCAGATGATACCGGGGTCACCATCAGATC
GGCCAAGATCTTCCCCAATACGTGGAAGCCTAAGCTGTCTGCGAACATTA
CCTCGACCGACGATGGTGACGTCGCCATTTTCGAGCTCCCGCAGGACGGC
CTGACACTGAACAGGGAGTACAGGATCACCTACAAGGTGCGCGTCGGGAG
GGGCATTCCCTCTGGTGACACCATTCCACTTCCTTTTGCCTTCAACGGCC
CCAACGTTGATGGAGACGCGGATCTCGAGGTGCTTGTCAGGTAA
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Synonyms
Publications