NO27G01680, NO27G01680 (gene) Nannochloropsis oceanica

Overview
NameNO27G01680
Unique NameNO27G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1280
Alignment locationchr27:557305..558584 +

Link to JBrowse

Properties
Property NameValue
DescriptionTransmembrane protein 18
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:557305..558584 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026721TMEM18
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO27G01680 vs. NCBI_GenBank
Match: XP_009036340.1 (hypothetical protein AURANDRAFT_24962 [Aureococcus anophagefferens] >EGB09233.1 hypothetical protein AURANDRAFT_24962 [Aureococcus anophagefferens])

HSP 1 Score: 114.8 bits (286), Expect = 2.800e-22
Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 0
Query:   38 PEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSKHSKNLRVKKQQ 175
            PE F EN  AF AA+DW ERWIQG++A+H  LW + + FRK   VQ  +FF V   V  +E LN  L    W  F+TQNYFD+ G+FA  +   P++ L+   L  FLH AA MLV VKR E +   +   + K+++
Sbjct:   23 PETFLENVAAFRAAVDWSERWIQGVLAWHASLWVVFLAFRKVYEVQVGLFFGVTIAVGLAERLNA-LGAAHWEKFATQNYFDDHGIFAGALFCAPMLALSLCMLLNFLHLAAHMLVDVKRREFKDHLTAKEKEKEKE 158          
BLAST of NO27G01680 vs. NCBI_GenBank
Match: CBN75919.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.5 bits (267), Expect = 4.400e-20
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 0
Query:   38 PEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELR 162
            PEGF EN QAF +A+DW E WIQG++ FH+LLW   I  R++   Q  +F  V      SE +NT LR++ W +FS QNYFDE G+F   M  GPL++L    L   L   A++LV VK  + +
Sbjct:   54 PEGFVENFQAFRSAVDWSEPWIQGILVFHLLLWVFFIVTRRSFGAQVGLFAVVLTGTRLSEFINTCLRDR-WQNFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 176          
BLAST of NO27G01680 vs. NCBI_GenBank
Match: PSC68436.1 (Transmembrane 18 isoform B [Micractinium conductrix])

HSP 1 Score: 101.3 bits (251), Expect = 3.100e-18
Identity = 62/162 (38.27%), Postives = 90/162 (55.56%), Query Frame = 0
Query:    3 ELDESQAGPASAVSEEM-QNWAAEQVFKLAREQGAQPEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSK 164
            E+ E  AG    V +++ Q W         RE    P    E  + F AA+DW ERWIQGL+AFH LL   V+ FR+   V A++FF +  +V  +E +N  L    W  FS+QNYFD +G+F   +L+ PL+ +  L L  +L A + +L+++KR EL  K
Sbjct:   10 EVREQLAGAMDVVLDDLRQKW---------RELSGGP-SVTEGLKRFVAAVDWSERWIQGLLAFHCLLLIFVVAFRRLPGVHAAVFFGIMPVVYFAERINA-LAATHWRSFSSQNYFDSQGIFTSALLSAPLLFIMLLILFHYLFATSALLIRMKRKELEYK 160          
BLAST of NO27G01680 vs. NCBI_GenBank
Match: PSC68460.1 (Transmembrane 18 isoform A [Micractinium conductrix])

HSP 1 Score: 101.3 bits (251), Expect = 3.100e-18
Identity = 62/162 (38.27%), Postives = 90/162 (55.56%), Query Frame = 0
Query:    3 ELDESQAGPASAVSEEM-QNWAAEQVFKLAREQGAQPEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSK 164
            E+ E  AG    V +++ Q W         RE    P    E  + F AA+DW ERWIQGL+AFH LL   V+ FR+   V A++FF +  +V  +E +N  L    W  FS+QNYFD +G+F   +L+ PL+ +  L L  +L A + +L+++KR EL  K
Sbjct:   10 EVREQLAGAMDVVLDDLRQKW---------RELSGGP-SVTEGLKRFVAAVDWSERWIQGLLAFHCLLLIFVVAFRRLPGVHAAVFFGIMPVVYFAERINA-LAATHWRSFSSQNYFDSQGIFTSALLSAPLLFIMLLILFHYLFATSALLIRMKRKELEYK 160          
BLAST of NO27G01680 vs. NCBI_GenBank
Match: PSC68459.1 (Transmembrane 18 isoform B [Micractinium conductrix])

HSP 1 Score: 101.3 bits (251), Expect = 3.100e-18
Identity = 62/162 (38.27%), Postives = 90/162 (55.56%), Query Frame = 0
Query:    3 ELDESQAGPASAVSEEM-QNWAAEQVFKLAREQGAQPEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSK 164
            E+ E  AG    V +++ Q W         RE    P    E  + F AA+DW ERWIQGL+AFH LL   V+ FR+   V A++FF +  +V  +E +N  L    W  FS+QNYFD +G+F   +L+ PL+ +  L L  +L A + +L+++KR EL  K
Sbjct:   10 EVREQLAGAMDVVLDDLRQKW---------RELSGGP-SVTEGLKRFVAAVDWSERWIQGLLAFHCLLLIFVVAFRRLPGVHAAVFFGIMPVVYFAERINA-LAATHWRSFSSQNYFDSQGIFTSALLSAPLLFIMLLILFHYLFATSALLIRMKRKELEYK 160          
BLAST of NO27G01680 vs. NCBI_GenBank
Match: PSC68437.1 (Transmembrane 18 isoform A [Micractinium conductrix])

HSP 1 Score: 101.3 bits (251), Expect = 3.100e-18
Identity = 62/162 (38.27%), Postives = 90/162 (55.56%), Query Frame = 0
Query:    3 ELDESQAGPASAVSEEM-QNWAAEQVFKLAREQGAQPEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSK 164
            E+ E  AG    V +++ Q W         RE    P    E  + F AA+DW ERWIQGL+AFH LL   V+ FR+   V A++FF +  +V  +E +N  L    W  FS+QNYFD +G+F   +L+ PL+ +  L L  +L A + +L+++KR EL  K
Sbjct:   10 EVREQLAGAMDVVLDDLRQKW---------RELSGGP-SVTEGLKRFVAAVDWSERWIQGLLAFHCLLLIFVVAFRRLPGVHAAVFFGIMPVVYFAERINA-LAATHWRSFSSQNYFDSQGIFTSALLSAPLLFIMLLILFHYLFATSALLIRMKRKELEYK 160          
BLAST of NO27G01680 vs. NCBI_GenBank
Match: KOO34144.1 (transmembrane protein 18-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 99.4 bits (246), Expect = 1.200e-17
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 0
Query:   39 EGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSKHSKNLRVKKQQ 175
            + F  +   F  A+DW E W++GL  FH+L+W + I FR+  NVQ  +   + G+V ++E LN RL  + W  F+ QNYFD++GVF   + + PL+  T   L   L +A+++L++VKR ELR+        KKQ+
Sbjct:   28 QSFMTDMLGFYHAVDWSEPWLRGLAVFHILVWTIAIAFRRWDNVQMLLLVSILGVVYSAETLN-RLGGEHWQQFAGQNYFDKQGVFISVLFSAPLLACTLFMLLNALRSASSLLIKVKRKELRAVARTRREEKKQE 162          
BLAST of NO27G01680 vs. NCBI_GenBank
Match: PNH06883.1 (Transmembrane protein 18 [Tetrabaena socialis])

HSP 1 Score: 97.4 bits (241), Expect = 4.500e-17
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 0
Query:   25 EQVFKLAREQG---AQPEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSKHSKNLRVKKQQ 175
            + VFK  R Q     + E F    Q F  AIDW E WI G++AFHV ++   +  RK   +Q  +F    G+V  SE LN RL    W  FSTQNYFD  GVF   +++ PLI++  + L  +L + A+MLV+ K+ EL+ +  +  +  K Q
Sbjct:    9 QDVFKDLRRQWQSFQEAEPFLHVVQGFIHAIDWREPWIIGILAFHVAMFLAAVATRKRTAIQTVVFMLAAGIVFMSERLN-RLAGLQWERFSTQNYFDATGVFMSAVVSAPLIIVMFIVLINYLLSCASMLVEAKKRELKHRARQRAKDAKAQ 160          
BLAST of NO27G01680 vs. NCBI_GenBank
Match: XP_010461263.1 (PREDICTED: transmembrane protein 18 [Camelina sativa])

HSP 1 Score: 95.5 bits (236), Expect = 1.700e-16
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = 0
Query:   17 EEMQNWAAEQVFKLAREQGAQPEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSK 164
            E+  +  A+ V KL+ E     +  ++N   F  AIDW E WI GL+AFH LL  + +  R+++N    +F    G V  +E LN  LR K W  FSTQNYFD+ GVF   + +GPL+V+  + L   L +   ++V+ KRAELR +
Sbjct:    9 EQQMDLMADLVQKLSGELRTGLQPAYDNFLGFFHAIDWKEPWIMGLMAFHALLLLVTLLSRRHLNFHMFLFLLALGGVYFAENLNRELR-KNWKSFSTQNYFDQHGVFVSVLWSGPLLVIAMIILINTLFSLCYLIVKWKRAELRHR 154          
BLAST of NO27G01680 vs. NCBI_GenBank
Match: XP_010478866.1 (PREDICTED: transmembrane protein 18-like [Camelina sativa] >XP_010478867.1 PREDICTED: transmembrane protein 18-like [Camelina sativa])

HSP 1 Score: 95.1 bits (235), Expect = 2.300e-16
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = 0
Query:   17 EEMQNWAAEQVFKLAREQGAQPEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSK 164
            E+  +  A+ V KL+ E     +  ++N   F  AIDW E WI GL+AFH LL  + +  R+++N    +F    G V  +E LN  LR K W  FSTQNYFD+ GVF   + +GPL+V+  + L   L +   ++V+ KRAELR +
Sbjct:    9 EQQMDLMADLVQKLSGELRTGIQPAYDNFLGFFHAIDWKEPWIMGLMAFHALLLLVTLLSRRHLNFHMFLFLLAWGGVYFAENLNRELR-KNWKSFSTQNYFDQHGVFVSVLWSGPLLVIAMIILINTLFSLCYLIVKWKRAELRHR 154          
The following BLAST results are available for this feature:
BLAST of NO27G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009036340.12.800e-2244.53hypothetical protein AURANDRAFT_24962 [Aureococcus... [more]
CBN75919.14.400e-2045.16conserved unknown protein [Ectocarpus siliculosus][more]
PSC68436.13.100e-1838.27Transmembrane 18 isoform B [Micractinium conductri... [more]
PSC68460.13.100e-1838.27Transmembrane 18 isoform A [Micractinium conductri... [more]
PSC68459.13.100e-1838.27Transmembrane 18 isoform B [Micractinium conductri... [more]
PSC68437.13.100e-1838.27Transmembrane 18 isoform A [Micractinium conductri... [more]
KOO34144.11.200e-1738.24transmembrane protein 18-like protein [Chrysochrom... [more]
PNH06883.14.500e-1738.56Transmembrane protein 18 [Tetrabaena socialis][more]
XP_010461263.11.700e-1639.46PREDICTED: transmembrane protein 18 [Camelina sati... [more]
XP_010478866.12.300e-1639.46PREDICTED: transmembrane protein 18-like [Camelina... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01680.1NO27G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608301gene_9914Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01680.1NO27G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01680 ID=NO27G01680|Name=NO27G01680|organism=Nannochloropsis oceanica|type=gene|length=1280bp
ATGGAGGAACTTGACGAAAGCCAAGCAGGGCCTGCCTCGGCAGTATCAGA
GGAAATGCAAAACTGGGCAGCGGAGCAGgtaggagggaggaagggggagt
gcgagggtggtaaaagggcacgtatcctcactcacacttgactctgtccc
tcctgccttgcacgagcagGTCTTTAAGCTTGCCAGGGAACAAGGCGCTC
AACCTGAGGGTTTCTGGGAAAATGCACAGGgtagggaagcacggagggag
gggaggaggggagggagcggggacgacaagggaagagtaaaagaatgaac
aattaacggatatacatacatacacatacaccttttccgcacacagCCTT
TGCCGCGGCGATTGATTGGGGCGAACGCTGGATCCAGgtacaaatgagac
gacagagatggtcacacttcctccctcctttcccagcactaaattcttcc
ctgctcttgttccaaatttgccggtcgaggagcttagcataaccacccga
ccctctccccctcgatacttcccctaatttaatcattcagGGTTTAGTGG
CCTTTCACGTCCTCTTGTGGTTTCTCGTCATCGGCTTCCGCAAGAACATG
AACGTCCAGgtatgaaggccctccctcccttcttccctcccttcctccct
cccgttcgcacctttaccaagaaaggacatcagctctcccacctcttttc
cgccctgccttctctctcctttccttattaattgcttcgtgtctccccct
tcctcccctccctcccccagGCCTCCATTTTCTTCTTTGTTTGTGGCCTG
GTCGCTGCGTCAGAACCCCTCAATACTCGGCTAAGAGAGAAGTGGTGGAC
gtaaggagggaggcaggcatgggggggaggcagggagggaggaagggagg
gactgacggcgtctaggatgaccctgtccatctcatctccctccctccct
ccctccctccctccctccctccctttctccctccctctctttgacagACA
CTTCTCCACACAAAATTACTTCGACGAGCGAGGCGTTTTCGCCGTCTGTA
TGCTCACTGGGCCTCTCATTGTCCTCACGTGTCTCCAACTGgtaaggcct
ccgtccctccgtccctccctccgtccctccctcccttcctgatcccctcc
gtccctccttccctcccgcccttcccagTGCATCTTTCTCCACGCCGCGG
CCACCATGTTGGTTCAAGTGAAACGTGCAGAGCTCCGCAGCAAGCACAGC
AAAAACCTCCGGGTGAAAAAGCAGCAATAA
back to top

protein sequence of NO27G01680.1

>NO27G01680.1-protein ID=NO27G01680.1-protein|Name=NO27G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MEELDESQAGPASAVSEEMQNWAAEQVFKLAREQGAQPEGFWENAQAFAA
AIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPL
NTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAAT
MLVQVKRAELRSKHSKNLRVKKQQ*
back to top
Synonyms
Publications