NO27G01680.1, NO27G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01680.1
Unique NameNO27G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length525
Alignment locationchr27:557305..558584 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:557305..558584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO27G01680.1 vs.
Match: XP_009036340.1 (hypothetical protein AURANDRAFT_24962 [Aureococcus anophagefferens]; EGB09233.1 hypothetical protein AURANDRAFT_24962 [Aureococcus anophagefferens])

HSP 1 Score: 114.8 bits (286), Expect = 2.800e-22
Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 0 
Query:   38 PEGFWENAQAFAAAIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPLNTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAATMLVQVKRAELRSKHSKNLRVKKQQ 175
            PE F EN  AF AA+DW ERWIQG++A+H  LW + + FRK   VQ  +FF V   V  +E LN  L    W  F+TQNYFD+ G+FA  +   P++ L+   L  FLH AA MLV VKR E +   +   + K+++
Sbjct:   23 PETFLENVAAFRAAVDWSERWIQGVLAWHASLWVVFLAFRKVYEVQVGLFFGVTIAVGLAERLNA-LGAAHWEKFATQNYFDDHGIFAGALFCAPMLALSLCMLLNFLHLAAHMLVDVKRREFKDHLTAKEKEKEKE 158
The following BLAST results are available for this feature:
BLAST of NO27G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009036340.12.800e-2244.53hypothetical protein AURANDRAFT_24962 [Aureococcus... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01680NO27G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01680.1NO27G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01680.1.cds1NO27G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01680.1.cds2NO27G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01680.1.cds3NO27G01680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01680.1.cds4NO27G01680.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01680.1.cds5NO27G01680.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01680.1.cds6NO27G01680.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01680.1.cds7NO27G01680.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01680.1 ID=NO27G01680.1|Name=NO27G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=525bp
ATGGAGGAACTTGACGAAAGCCAAGCAGGGCCTGCCTCGGCAGTATCAGA
GGAAATGCAAAACTGGGCAGCGGAGCAGGTCTTTAAGCTTGCCAGGGAAC
AAGGCGCTCAACCTGAGGGTTTCTGGGAAAATGCACAGGCCTTTGCCGCG
GCGATTGATTGGGGCGAACGCTGGATCCAGGGTTTAGTGGCCTTTCACGT
CCTCTTGTGGTTTCTCGTCATCGGCTTCCGCAAGAACATGAACGTCCAGG
CCTCCATTTTCTTCTTTGTTTGTGGCCTGGTCGCTGCGTCAGAACCCCTC
AATACTCGGCTAAGAGAGAAGTGGTGGACACACTTCTCCACACAAAATTA
CTTCGACGAGCGAGGCGTTTTCGCCGTCTGTATGCTCACTGGGCCTCTCA
TTGTCCTCACGTGTCTCCAACTGTGCATCTTTCTCCACGCCGCGGCCACC
ATGTTGGTTCAAGTGAAACGTGCAGAGCTCCGCAGCAAGCACAGCAAAAA
CCTCCGGGTGAAAAAGCAGCAATAA
back to top

protein sequence of NO27G01680.1

>NO27G01680.1-protein ID=NO27G01680.1-protein|Name=NO27G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MEELDESQAGPASAVSEEMQNWAAEQVFKLAREQGAQPEGFWENAQAFAA
AIDWGERWIQGLVAFHVLLWFLVIGFRKNMNVQASIFFFVCGLVAASEPL
NTRLREKWWTHFSTQNYFDERGVFAVCMLTGPLIVLTCLQLCIFLHAAAT
MLVQVKRAELRSKHSKNLRVKKQQ*
back to top

mRNA from alignment at chr27:557305..558584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01680.1 ID=NO27G01680.1|Name=NO27G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1280bp|location=Sequence derived from alignment at chr27:557305..558584+ (Nannochloropsis oceanica)
ATGGAGGAACTTGACGAAAGCCAAGCAGGGCCTGCCTCGGCAGTATCAGA
GGAAATGCAAAACTGGGCAGCGGAGCAGGTAGGAGGGAGGAAGGGGGAGT
GCGAGGGTGGTAAAAGGGCACGTATCCTCACTCACACTTGACTCTGTCCC
TCCTGCCTTGCACGAGCAGGTCTTTAAGCTTGCCAGGGAACAAGGCGCTC
AACCTGAGGGTTTCTGGGAAAATGCACAGGGTAGGGAAGCACGGAGGGAG
GGGAGGAGGGGAGGGAGCGGGGACGACAAGGGAAGAGTAAAAGAATGAAC
AATTAACGGATATACATACATACACATACACCTTTTCCGCACACAGCCTT
TGCCGCGGCGATTGATTGGGGCGAACGCTGGATCCAGGTACAAATGAGAC
GACAGAGATGGTCACACTTCCTCCCTCCTTTCCCAGCACTAAATTCTTCC
CTGCTCTTGTTCCAAATTTGCCGGTCGAGGAGCTTAGCATAACCACCCGA
CCCTCTCCCCCTCGATACTTCCCCTAATTTAATCATTCAGGGTTTAGTGG
CCTTTCACGTCCTCTTGTGGTTTCTCGTCATCGGCTTCCGCAAGAACATG
AACGTCCAGGTATGAAGGCCCTCCCTCCCTTCTTCCCTCCCTTCCTCCCT
CCCGTTCGCACCTTTACCAAGAAAGGACATCAGCTCTCCCACCTCTTTTC
CGCCCTGCCTTCTCTCTCCTTTCCTTATTAATTGCTTCGTGTCTCCCCCT
TCCTCCCCTCCCTCCCCCAGGCCTCCATTTTCTTCTTTGTTTGTGGCCTG
GTCGCTGCGTCAGAACCCCTCAATACTCGGCTAAGAGAGAAGTGGTGGAC
GTAAGGAGGGAGGCAGGCATGGGGGGGAGGCAGGGAGGGAGGAAGGGAGG
GACTGACGGCGTCTAGGATGACCCTGTCCATCTCATCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCCCTCTCTTTGACAGACA
CTTCTCCACACAAAATTACTTCGACGAGCGAGGCGTTTTCGCCGTCTGTA
TGCTCACTGGGCCTCTCATTGTCCTCACGTGTCTCCAACTGGTAAGGCCT
CCGTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCTTCCTGATCCCCTCC
GTCCCTCCTTCCCTCCCGCCCTTCCCAGTGCATCTTTCTCCACGCCGCGG
CCACCATGTTGGTTCAAGTGAAACGTGCAGAGCTCCGCAGCAAGCACAGC
AAAAACCTCCGGGTGAAAAAGCAGCAATAA
back to top

Coding sequence (CDS) from alignment at chr27:557305..558584+

>NO27G01680.1 ID=NO27G01680.1|Name=NO27G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at chr27:557305..558584+ (Nannochloropsis oceanica)
ATGGAGGAACTTGACGAAAGCCAAGCAGGGCCTGCCTCGGCAGTATCAGA
GGAAATGCAAAACTGGGCAGCGGAGCAGGTCTTTAAGCTTGCCAGGGAAC
AAGGCGCTCAACCTGAGGGTTTCTGGGAAAATGCACAGGCCTTTGCCGCG
GCGATTGATTGGGGCGAACGCTGGATCCAGGGTTTAGTGGCCTTTCACGT
CCTCTTGTGGTTTCTCGTCATCGGCTTCCGCAAGAACATGAACGTCCAGG
CCTCCATTTTCTTCTTTGTTTGTGGCCTGGTCGCTGCGTCAGAACCCCTC
AATACTCGGCTAAGAGAGAAGTGGTGGACACACTTCTCCACACAAAATTA
CTTCGACGAGCGAGGCGTTTTCGCCGTCTGTATGCTCACTGGGCCTCTCA
TTGTCCTCACGTGTCTCCAACTGTGCATCTTTCTCCACGCCGCGGCCACC
ATGTTGGTTCAAGTGAAACGTGCAGAGCTCCGCAGCAAGCACAGCAAAAA
CCTCCGGGTGAAAAAGCAGCAATAA
back to top
Synonyms
Publications