NO27G01610, NO27G01610 (gene) Nannochloropsis oceanica

Overview
NameNO27G01610
Unique NameNO27G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1632
Alignment locationchr27:536029..537660 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:536029..537660 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO27G01610 vs. NCBI_GenBank
Match: EWM20106.1 (hypothetical protein Naga_101772g1 [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 2.400e-28
Identity = 75/99 (75.76%), Postives = 76/99 (76.77%), Query Frame = 0 
Query:  123 GSTAVAVHHLDQTEIKRIHDK-----------AATDVAQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 211
            GSTAVAVHHLDQTEIKRI DK                   KADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAI EN+ KRGG GGPQD
Sbjct:   59 GSTAVAVHHLDQTEIKRIQDKXXXXXXXXXXXXXXXXXXXKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAIRENQTKRGGGGGPQD 157
[Close]
BLAST of NO27G01610 vs. NCBI_GenBank
Match: EWM23030.1 (hypothetical protein Naga_100740g1 [Nannochloropsis gaditana])

HSP 1 Score: 112.8 bits (281), Expect = 1.300e-21
Identity = 75/144 (52.08%), Postives = 77/144 (53.47%), Query Frame = 0 
Query:  107 MVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVARVEGE----------------------------------------RRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 211
            MV V+VAVLGLVAAVAGSTAVAVHHLDQTEIKRI DKA                                                                LRAEVERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:    1 MVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKAXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAEVERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 144
[Close]
BLAST of NO27G01610 vs. NCBI_GenBank
Match: EWM20226.1 (hypothetical protein Naga_100681g5 [Nannochloropsis gaditana])

HSP 1 Score: 103.6 bits (257), Expect = 7.600e-19
Identity = 108/198 (54.55%), Postives = 111/198 (56.06%), Query Frame = 0 
Query:   53 SMLCNLATKAGAVAWTRGAQSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDV----------------------------------------AQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 211
            SMLC+LATKAGA+AW RGAQSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 GSTAVAVHHLDQTEIKRI DKA  DV                                                                 ERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:   23 SMLCSLATKAGAMAWRRGAQSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTAVAVHHLDQTEIKRIQDKATADVXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 220
[Close]
BLAST of NO27G01610 vs. NCBI_GenBank
Match: EWM23033.1 (hypothetical protein Naga_100849g2 [Nannochloropsis gaditana])

HSP 1 Score: 94.0 bits (232), Expect = 6.100e-16
Identity = 68/160 (42.50%), Postives = 72/160 (45.00%), Query Frame = 0 
Query:  106 EMVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVARVEGE-------------------------------------------------------RRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 211
            ++V V+VAVLGLVAAVAGSTAVAVHHLDQTEIKRI DK                                                                                     ERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:   18 QVVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKXXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 177
[Close]
BLAST of NO27G01610 vs. NCBI_GenBank
Match: EWM23032.1 (hypothetical protein Naga_100849g4 [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 1.000e-15
Identity = 69/166 (41.57%), Postives = 72/166 (43.37%), Query Frame = 0 
Query:  107 MVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVARVEGERRL--------------------------------------------------------------SEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 211
            MV V+VAVLGLVAAVAGSTAVAVHHLDQTEIKRI DKA  DV               +                                                                         YKYDLRLTQTQDFKPYQAAI EN+ KRGGAGGPQD
Sbjct:    1 MVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKATADVXXXXXXXXXXXXXXAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKYDLRLTQTQDFKPYQAAIRENQTKRGGAGGPQD 166
[Close]
BLAST of NO27G01610 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 4.500e-11
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 0 
Query:  115 LGLVAAVAGSTAVAVHHLDQ----TEIKRIHDKAATDVAQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 211
            +G V  VAG+TAV V   DQ    TEIK +  KAA       A++ARVE +R +SE   +AEVER+K +++L  TQD++PYQAA+++ + KRGG  G ++
Sbjct:   77 IGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAA-------AEIARVEDKRAMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEE 169
[Close]
BLAST of NO27G01610 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-9
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:  115 LGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQ-----------AKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 211
            +G V  VAG+TAV V   DQTEIK I  KAA ++AQ                        +SE   +AEVER+K +++L  TQD++PYQAA+++ + KRGG GG ++
Sbjct:   95 IGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEE 201
[Close]
BLAST of NO27G01610 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-9
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:  115 LGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQ-----------AKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 211
            +G V  VAG+TAV V   DQTEIK I  KAA ++AQ                        +SE   +AEVER+K +++L  TQD++PYQAA+++ + KRGG GG ++
Sbjct:   43 IGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEE 149
The following BLAST results are available for this feature:
BLAST of NO27G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM20106.12.400e-2875.76hypothetical protein Naga_101772g1 [Nannochloropsi... [more]
EWM23030.11.300e-2152.08hypothetical protein Naga_100740g1 [Nannochloropsi... [more]
EWM20226.17.600e-1954.55hypothetical protein Naga_100681g5 [Nannochloropsi... [more]
EWM23033.16.100e-1642.50hypothetical protein Naga_100849g2 [Nannochloropsi... [more]
EWM23032.11.000e-1541.57hypothetical protein Naga_100849g4 [Nannochloropsi... [more]
EWM20057.14.500e-1146.00hypothetical protein Naga_102002g2 [Nannochloropsi... [more]
EWM20145.11.400e-941.12hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20146.11.400e-941.12hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01610.1NO27G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01610.1NO27G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01610 ID=NO27G01610|Name=NO27G01610|organism=Nannochloropsis oceanica|type=gene|length=1632bp
ATGTACAGTAGCCGGGGTTATGAAGAAGAGgtgggcatgagggggtagta
ggactcatacacgactaacgagggctccacaaacattttaaccagcgaat
tcttcctttctctactttattttgatgtgatgcacttgctcgttttatct
cttccgcactcactccgccaaccccgcttccaacttgtccaaccaagccc
ccgccgcttgtcgaaggagggggcttgggggggacagacggtgcggtggg
gaggagggaggaggttatcatatgaaagcagggagtcaaggacctttagc
aaaggctttgggcctcggaagaaagccaccagaggcgcgtgccagagacg
acattgtgttgtcaataatgccagccggttgttgtgtatatgtacattgg
ggcaagatggcacgtgaggtcaacaagcgccatcatctggccgcggccgc
agtcttgtacacgggacctctccacgagttttttgcttgtgtctcccttg
tccgtagtcttgtgtgcggcagaacactcaatttccaaacccaataccca
cccacccgtacagATTTGTCACGTCGCCCTCTTGCAATTGTGCCGGCTTC
TTTGGCTGGTTTCGTGGTGGTGGGTGCCTCCGCTTCGCTCTGGGgttcgt
tgctccatgcatcaccatcaagcacggcctgcctcctccctcttttggtc
ttgccctttggcacactagGCAATGGGCACCCGCGCAGCCACCATTCTGA
GGTCTAGCgtgcgtacagtgaggaggctttcactcttatggcgtagcggc
tgtggttctgaatagcttgttgtaggcttggaaaccgacctcaaacactc
actcgccccttcctccctccctcccgtaacatgcactgctgcttgccttg
ctgcttgctgccgccatcaaccacgaccaccacaaggaagCACGAGAGCA
TGTTGTGCAACTTGGCCACGAAAGCGGGAGCCGTGGCGTGGACACGGGGC
GCGCAATCCGGTCGAGgtaaggtggcttgagctcatgcatattggggagg
gctttagggtggtggggtggggagggacgtgcggtgcacgcggccgcaaa
ctgccggcggcatgttgatttattcccgtctgtctgtctgtcatgtttga
atctcaatccttattgtgcggacaaggaaccacaccaaggtgttcacgca
caagcacatccatacgcgccaacagGGAAGGGACGCGGGCTGCGGGGGGC
GTCTCTCTCGACAACCCACACGGGTACAGGCACGGGCAGTGAAGGGGGCT
CCGATAAGACATTTGAAATGGTGAAAGTGTCGGTAGCTGTCTTGGGCTTG
GTGGCGGCGGTTGCTGGCTCTACAGCTGTGGCGGTCCATCATCTCGACCA
GACGGAGATCAAGCGCATTCACGACAAGGCGGCGACGGACGTCGCTCAGG
CCAAAGCAGACGTCGCGCGCGTCGAGGGCGAGCGAAGGTTGTCGGAGGAG
CGTTTGAGGGCGGAGGTGGAGCGGTACAAGTATGACCTGCGACTGACGCA
AACGCAGGACTTCAAACCGTACCAGGCCGCCATTTTGGAGAACAAAATAA
AGAGGGGAGGAGCCGGCGGACCGCAGGACTAG
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protein sequence of NO27G01610.1

>NO27G01610.1-protein ID=NO27G01610.1-protein|Name=NO27G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MYSSRGYEEEICHVALLQLCRLLWLVSWWWVPPLRSGAMGTRAATILRSS
HESMLCNLATKAGAVAWTRGAQSGRGKGRGLRGASLSTTHTGTGTGSEGG
SDKTFEMVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQ
AKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKI
KRGGAGGPQD*
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Synonyms
Publications