NO27G01610.1, NO27G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01610.1
Unique NameNO27G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length633
Alignment locationchr27:536029..537660 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:536029..537660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01610.1 vs.
Match: EWM20226.1 (hypothetical protein Naga_100681g5 [Nannochloropsis gaditana])

HSP 1 Score: 249.2 bits (635), Expect = 1.100e-62
Identity = 146/208 (70.19%), Postives = 155/208 (74.52%), Query Frame = 0 
Query:   43 AATILRSSHESMLCNLATKAGAVAWTRGAQSGRGKGRGLRGASLSTTHTGTGTGSEGGSDKTFEMVKVSVAVLGLVAAVAGSTAVAVHHLDQ-----------------------------TEIKRIHDKAATDVAQAKAD-----------VARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 211
            + T     HESMLC+LATKAGA+AW RGAQSGRGKGR LRGASLSTTHTGTGTGSEGGS  T ++V V+VAVLGLVAAVAGSTAVAVHHLDQ                             TEIKRIHDKAAT++AQAKAD           VARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:   13 STTTTTRKHESMLCSLATKAGAMAWRRGAQSGRGKGRRLRGASLSTTHTGTGTGSEGGSVTTIKIVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKATADVARDQTEIKRIQDKAATEIKRIHDKAATEIAQAKADVARVEGERKSEVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 220
The following BLAST results are available for this feature:
BLAST of NO27G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20226.11.100e-6270.19hypothetical protein Naga_100681g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01610NO27G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01610.1NO27G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01610.1.cds1NO27G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01610.1.cds2NO27G01610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01610.1.cds3NO27G01610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01610.1.cds4NO27G01610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01610.1.cds5NO27G01610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01610.1 ID=NO27G01610.1|Name=NO27G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
ATGTACAGTAGCCGGGGTTATGAAGAAGAGATTTGTCACGTCGCCCTCTT
GCAATTGTGCCGGCTTCTTTGGCTGGTTTCGTGGTGGTGGGTGCCTCCGC
TTCGCTCTGGGGCAATGGGCACCCGCGCAGCCACCATTCTGAGGTCTAGC
CACGAGAGCATGTTGTGCAACTTGGCCACGAAAGCGGGAGCCGTGGCGTG
GACACGGGGCGCGCAATCCGGTCGAGGGAAGGGACGCGGGCTGCGGGGGG
CGTCTCTCTCGACAACCCACACGGGTACAGGCACGGGCAGTGAAGGGGGC
TCCGATAAGACATTTGAAATGGTGAAAGTGTCGGTAGCTGTCTTGGGCTT
GGTGGCGGCGGTTGCTGGCTCTACAGCTGTGGCGGTCCATCATCTCGACC
AGACGGAGATCAAGCGCATTCACGACAAGGCGGCGACGGACGTCGCTCAG
GCCAAAGCAGACGTCGCGCGCGTCGAGGGCGAGCGAAGGTTGTCGGAGGA
GCGTTTGAGGGCGGAGGTGGAGCGGTACAAGTATGACCTGCGACTGACGC
AAACGCAGGACTTCAAACCGTACCAGGCCGCCATTTTGGAGAACAAAATA
AAGAGGGGAGGAGCCGGCGGACCGCAGGACTAG
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protein sequence of NO27G01610.1

>NO27G01610.1-protein ID=NO27G01610.1-protein|Name=NO27G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MYSSRGYEEEICHVALLQLCRLLWLVSWWWVPPLRSGAMGTRAATILRSS
HESMLCNLATKAGAVAWTRGAQSGRGKGRGLRGASLSTTHTGTGTGSEGG
SDKTFEMVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQ
AKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKI
KRGGAGGPQD*
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mRNA from alignment at chr27:536029..537660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01610.1 ID=NO27G01610.1|Name=NO27G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp|location=Sequence derived from alignment at chr27:536029..537660- (Nannochloropsis oceanica)
ATGTACAGTAGCCGGGGTTATGAAGAAGAGGTGGGCATGAGGGGGTAGTA
GGACTCATACACGACTAACGAGGGCTCCACAAACATTTTAACCAGCGAAT
TCTTCCTTTCTCTACTTTATTTTGATGTGATGCACTTGCTCGTTTTATCT
CTTCCGCACTCACTCCGCCAACCCCGCTTCCAACTTGTCCAACCAAGCCC
CCGCCGCTTGTCGAAGGAGGGGGCTTGGGGGGGACAGACGGTGCGGTGGG
GAGGAGGGAGGAGGTTATCATATGAAAGCAGGGAGTCAAGGACCTTTAGC
AAAGGCTTTGGGCCTCGGAAGAAAGCCACCAGAGGCGCGTGCCAGAGACG
ACATTGTGTTGTCAATAATGCCAGCCGGTTGTTGTGTATATGTACATTGG
GGCAAGATGGCACGTGAGGTCAACAAGCGCCATCATCTGGCCGCGGCCGC
AGTCTTGTACACGGGACCTCTCCACGAGTTTTTTGCTTGTGTCTCCCTTG
TCCGTAGTCTTGTGTGCGGCAGAACACTCAATTTCCAAACCCAATACCCA
CCCACCCGTACAGATTTGTCACGTCGCCCTCTTGCAATTGTGCCGGCTTC
TTTGGCTGGTTTCGTGGTGGTGGGTGCCTCCGCTTCGCTCTGGGGTTCGT
TGCTCCATGCATCACCATCAAGCACGGCCTGCCTCCTCCCTCTTTTGGTC
TTGCCCTTTGGCACACTAGGCAATGGGCACCCGCGCAGCCACCATTCTGA
GGTCTAGCGTGCGTACAGTGAGGAGGCTTTCACTCTTATGGCGTAGCGGC
TGTGGTTCTGAATAGCTTGTTGTAGGCTTGGAAACCGACCTCAAACACTC
ACTCGCCCCTTCCTCCCTCCCTCCCGTAACATGCACTGCTGCTTGCCTTG
CTGCTTGCTGCCGCCATCAACCACGACCACCACAAGGAAGCACGAGAGCA
TGTTGTGCAACTTGGCCACGAAAGCGGGAGCCGTGGCGTGGACACGGGGC
GCGCAATCCGGTCGAGGTAAGGTGGCTTGAGCTCATGCATATTGGGGAGG
GCTTTAGGGTGGTGGGGTGGGGAGGGACGTGCGGTGCACGCGGCCGCAAA
CTGCCGGCGGCATGTTGATTTATTCCCGTCTGTCTGTCTGTCATGTTTGA
ATCTCAATCCTTATTGTGCGGACAAGGAACCACACCAAGGTGTTCACGCA
CAAGCACATCCATACGCGCCAACAGGGAAGGGACGCGGGCTGCGGGGGGC
GTCTCTCTCGACAACCCACACGGGTACAGGCACGGGCAGTGAAGGGGGCT
CCGATAAGACATTTGAAATGGTGAAAGTGTCGGTAGCTGTCTTGGGCTTG
GTGGCGGCGGTTGCTGGCTCTACAGCTGTGGCGGTCCATCATCTCGACCA
GACGGAGATCAAGCGCATTCACGACAAGGCGGCGACGGACGTCGCTCAGG
CCAAAGCAGACGTCGCGCGCGTCGAGGGCGAGCGAAGGTTGTCGGAGGAG
CGTTTGAGGGCGGAGGTGGAGCGGTACAAGTATGACCTGCGACTGACGCA
AACGCAGGACTTCAAACCGTACCAGGCCGCCATTTTGGAGAACAAAATAA
AGAGGGGAGGAGCCGGCGGACCGCAGGACTAG
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Coding sequence (CDS) from alignment at chr27:536029..537660-

>NO27G01610.1 ID=NO27G01610.1|Name=NO27G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr27:536029..537660- (Nannochloropsis oceanica)
ATGTACAGTAGCCGGGGTTATGAAGAAGAGATTTGTCACGTCGCCCTCTT
GCAATTGTGCCGGCTTCTTTGGCTGGTTTCGTGGTGGTGGGTGCCTCCGC
TTCGCTCTGGGGCAATGGGCACCCGCGCAGCCACCATTCTGAGGTCTAGC
CACGAGAGCATGTTGTGCAACTTGGCCACGAAAGCGGGAGCCGTGGCGTG
GACACGGGGCGCGCAATCCGGTCGAGGGAAGGGACGCGGGCTGCGGGGGG
CGTCTCTCTCGACAACCCACACGGGTACAGGCACGGGCAGTGAAGGGGGC
TCCGATAAGACATTTGAAATGGTGAAAGTGTCGGTAGCTGTCTTGGGCTT
GGTGGCGGCGGTTGCTGGCTCTACAGCTGTGGCGGTCCATCATCTCGACC
AGACGGAGATCAAGCGCATTCACGACAAGGCGGCGACGGACGTCGCTCAG
GCCAAAGCAGACGTCGCGCGCGTCGAGGGCGAGCGAAGGTTGTCGGAGGA
GCGTTTGAGGGCGGAGGTGGAGCGGTACAAGTATGACCTGCGACTGACGC
AAACGCAGGACTTCAAACCGTACCAGGCCGCCATTTTGGAGAACAAAATA
AAGAGGGGAGGAGCCGGCGGACCGCAGGACTAG
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Synonyms
Publications